Page Banner

United States Department of Agriculture

Agricultural Research Service

Related Topics

Missing Genes (Ensemble 10.2)
headline bar
Gene Genomic DNA Porcine Chromosome Evidence for RNA Presence in 9.2 Presence in 10.2 Status in 10.2
ABCA2 1 Ssc.22962 or Ssc.34815 or Ssc.51006, Dawson RNA seq Assembly (partial) N Y Not an identified gene in Ensembl build 10.2.
ABHD16B Ssc.88100, Dawson Assembly (partial) N N
ABHD8 FP578985.1 2 ESTs, Dawson Assembly
ABO GU256573.1 1 (PMID: 11493261) Ssc.178, Dawson Assembly N
ADAMTS17 CU633266.2 1 Ssc.76275 or Ssc.5424 or Ssc.26552, Dawson Assembly N N
ADH6 Dawson Assembly (partial) N
ADIPOQ FP236586.3 13; NC_010455.4: 134076753-134077342 13q41 (PMID: 19029685) Ssc.18549 N Y Not an identified gene in Ensembl build 10.2.
ADRM1 Ssc.2655, Dawson Aseembly Not an identified gene in Ensembl build 10.2, 515 out of 1,424 bp present.
AFMID Ssc.25226, Dawson Assembly N N
AKAP1 Ssc.25740, Dawson RNA Seq Assembly
AKT1 NC_010448.3: 44334367-44359805 ? 6 ? Ssc.19672 or Ssc.75056 N Y Not an identified gene in Ensembl build 10.2.
ALDH8A1 DQ322253 1 (DQ322253) Ssc.33224 N Y Not an identified gene in Ensembl build 10.2.
ALDOA AY359812 3 Dawson Assembly N N
ALPK3 NC_010449.2  7 Ssc.46824, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2, 164 out of  9489 bp present.
ALYREF Ssc.16580 Y Not an identified gene in Ensembl build 10.2.
AMPD2 GACC01000499.1 N N
ANO8 FP578985.1, AORO01078052.1, AORO01078053.1 2 Ssc.98479 Dawson Assembly (partial)
AP3S1  Ssc.97677, Dawson RNA Seq Assembly N N
AP4M1 FP565623.1 3 Ssc.54882, Dawson RNA Seq Assembly N N
APPL1 13 Ssc.11881, Dawson RNA Seq Assembly  ? N
ARC AORO01071966.1, AORO01071967.1 EW508108.2, EV916309.2, Dawson Assembly
ARFGAP1 Ssc.79199 or Ssc.85634 or Ssc.95989, Dawson Assembly N N
ARFRP1 Ssc.37844 ? Y Not an identified gene in Ensembl build 10.2.
ARHGDIA Ssc.55483, Dawson RNA Seq Assembly
ARHGEF4 15 Ssc.28624, Dawson Assembly Not an identified gene in Ensembl build 10.2.
ARTN FP700148.1 6 XM_003356489.2 N Y Not an identified gene in Ensembl build 10.2.
ASB14 13 Dawson RNA Seq Assembly N N
ASCL2 AC151880.1, AC151879.1 Ssc.19166, Dawson Assembly
ASPSCR1 Ssc.42546 or Ssc.79092 N
ATG4B FP690349.1 15 Ssc.6320, Dawson Assembly
ATP11A GACC01000489.1 N
ATP6AP1 FP326695.7 X GACC01000155.1 ? Y Not an identified gene in Ensembl build 10.2.
ATP6V0B 6 Ssc.1970
AURKC Ssc.70056, Dawson Assembly
B9D1 AORO01075708.1 Ssc.61619, Dawson Assembly
BAI1   Ssc.47498 or Ssc.44894, Dawson Assembly (partial). N Y Not an identified gene in Ensembl build 10.2.
BEAN1 6 Dawson Assembly
BEND7 GACC01000384.1 N N
BHLHE23 Dawson Assembly N N
BIK CU633237.2 5 Ssc.41828 N Y Not an identified gene in Ensembl build 10.2.
BIRC5 12p11-p13 (PMID: 11435714) Ssc.432 N N
BIRC7 Ssc.44993 N N
BLOC1S3 NM_001098586.1 ? N
BMF CU407289.3 1 GACC01000386.1 ? Y Not an identified gene in Ensembl build 10.2.
BOLA2 Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
BRD9 Ssc.9464, Dawson Assembly
BST2 FP236421 13 Ssc.3921 N Y Not an identified gene in Ensembl build 10.2, 115  bp out of 534 bp present.
C11orf31 CU914175.2 2 Ssc.2514 ? Y Not an identified gene in Ensembl build 10.2.
C14orf79 NW_003535310.2 7 Ssc.40854, Dawson Assembly Not an identified gene in Ensembl build 10.2, 963 out of 1899 bps present.
C17orf99 Ssc.28282, Dawson Assembly N N
C18orf42 BM190013.1, CO991798.1, EW618780.2, BQ597354.1, EW482219.2, GT640853.1, EW286189.2, EW176661.2 Not an identified gene in Ensembl build 10.2, 2,024 out of 2,325 bp present.
C19orf10 GACC01000389.1 N Y Not an identified gene in Ensembl build 10.2, 235 bp align.
C1orf109 GACC01000430.1 N N
C1orf122 Ssc.2480, Dawson RNA Seq Assembly  N N
C1orf122 Ssc.2480, Dawson Assembly
C1orf86 Ssc.19366
C1QBP Ssc.6730 N N
C1S NC_010447.2 5 Ssc.1177, Dawson Assembly
C20Horf195 Ssc.46961, Dawson Assembly N N
C20orf24 Ssc.81349, Dawson RNA Seq Assembly
C20orf24  CU607085.2 Ssc.81349
C3orf20 FP236228.3 13 Ssc.33894 or Ssc.81029, Dawson Assembly Not an identified gene in Ensembl build 10.2, 1294 out of 3225 bps present.
C3orf38 Ssc.26107, Dawson Assembly N N
C5orf20 2 Dawson Assembly  Y Y Not an identified gene in Ensembl build 10.2.
C6orf203 NC_010443.3 1 Ssc.55109, Dawson Asssembly
C7orf26 Ssc.55016, Dawson RNA Seq Assembly Y Y Not an identified gene in Ensembl build 10.2.
C9orf142 1 GACC01000388.1 N N
C9orf96 Ssc.80857, Dawson Assembly (partial)
CA5A Ssc.89960 or Ssc.44717, Dawson Assembly
CAPN10 Ssc.18267
CARD11 Ssc.45657 N N
CARD9 Ssc.18896, Dawson Assembly (partial) N N
CASKIN2 FP312732.2 12 Ssc.49424 or Ssc.84986 or Ssc.85011 or Ssc.54616, Dawson Assembly
CASP7 NC_010456.2  14 Ssc.12026, GACC01000153.1
CBFB GACC01000302.1, GACC01000397.1
CBLN1 Ssc.66949
CBS Ssc.12299 or Ssc.60501, Dawson Assembly N N
CCDC106 AORO01066738.1 Ssc.5313, Dawson Asssembly
CCDC174 CU928311.2 13 Ssc.11578
CCDC79 Ssc.10644 or Ssc.88280, Dawson Assembly
CCL26 NC_010445.1  3 Ssc.42665, Dawson Assembly
CD160 CU467072.4 4 Ssc.48848 N Y
CD163 Ssc.5053 N N
CD300A 1 Ssc.59812
CD320 FP090904.3 2 Ssc.2309, Dawson Assembly N N
CD52 FQ073835.3 6 Ssc.100101 N N
CD7 FP565492.1 12 Ssc.62495 Y N Gene was in build 10.1 (XM_003357917.1)
CD74 FP565603.1 2 Ssc.27786 N N
CD99 FQ976631.1 Y Ssc.3205 N Y Partial sequence  out of  bp represented), full ORF not represented
CDCA8 Ssc.34299
CDH5 FP245510.2 6 Ssc.75 N N
CDKN1C Ssc.15131 N Y Not an identified gene in Ensembl build 10.2.
CDR2 FP102610.2 3 Ssc.92049 or Ssc.65786, Dawson RNA Seq Assembly Y Not an identified gene in Ensembl build 10.2.
CDRT4 NC_010454.3 12 Ssc.88769, Dawson Assembly Y Not an identified gene in Ensembl build 10.2,  2,310 out of 2,310 ,bp present.
CEACAM1 6 Ssc.61724 N N
CEACAM21 6 GACC01000423.1 N Y 175 out of 1,468 bp align.
CER1 CU469333.2 1 Dawson Assembly Y N
CERK FP565670.1 5 GACC01000391.1 N Y Not an identified gene in Ensembl build 10.2, 269 out of 4201 bp align.
CES2 Ssc.59313, Dawson Assembly (partial) N N
CFHR2 FP340276.1 10 Dawson Assembly N N
CGGBP1 Ssc.55705, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2, 976 out of 4550 bp align.
CHAMP1 GACC01000494.1 N N
CHD9 Ssc.76709 or Ssc.76453, Dawson RNA Seq Assembly  N N
CHEK2 Ssc.4785 N N
CHMP7 GACC01000495.1 N
CHP2 Ssc.44563 N Y Not an identified gene in Ensembl build 10.2.
CHRM2 CU656005.2 18 Ssc.78438 or Ssc.16247, Dawson Assembly
CHRNA4 Dawson Assembly (partial) N N
CHTF8 GACC01000497.1, Ssc.56394 or Ssc.47880 N N
CKLF 6 EW032099,
EW634734,
EW632492,
EW634338
N N
CLDN2 NC_010461.2 X Ssc.19842, Dawson Assembly
CLDN9 FP312929.2 3 Ssc.50413 N Y Not an identified gene in Ensembl build 10.2.
CLEC2L Ssc.61242, Dawson Assembly N N
CLEC4A GACC01000148.1 N N
CLEC4D GACC01000147.1 N N
CLEC4E AB192511 7 GACC01000146.1 N N
CLIC1 AL773591.7 7 Ssc.11450 or Ssc.95018, Dawson Assembly
CLIC3 NW_003541079.1 Dawson Assembly
CLN3 Ssc.19602 Y Not an identified gene in Ensembl build 10.2, 227 out of 2087 bps present.
CMTM1 Ssc.33859, Dawson Assembly (partial) N N
CMTM2 Ssc.88125, Dawson Assembly (partial) N N
CMTM3 6 Ssc.5174, Dawson RNA Seq Assembly
CMTM4 6 Ssc.53746, Dawson Assemby
CNEP1R1 Ssc.27294
CNPY4 3 Ssc.77632, Dawson RNA Seq Assembly N N
CNTN2 FP326696.2 9 Dawson Assembly (partial) Y Y Not an identified gene in Ensembl build 10.2.
COL20A1 Dawson Assembly (partial) N N
COLEC12 GACC01000236.1 N N
COPS6 Ssc.8359, Dawson Assembly Y N
COX6B2 FP245423.2 6 Ssc.34656, Dawson Assembly Y N
CPA3 CU915416.3 13 Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
CREBL2 GACC01000327.1 N Y Not an identified gene in Ensembl build 10.2., 313 out of 3,814 bp present.
CRK CU986294.5 12 Ssc.17755 or Ssc.41450 N Y Not an identified gene in Ensembl build 10.2.
CRLF2 GACC01000187.1
CRYAA Ssc.28694
CSRNP2 Ssc.45602, Dawson Assembly
CTBP1 GACC01000326.1 N N
CTSE FP565475.1 9 Dawson Assembly (partial) ? Y Not an identified gene in Ensembl build 10.2.
CTU2 Ssc.21910
CYBA 6 Ssc.16296 N N
CYP11B2 Ssc.80848
CYP19A3 1q16-17 (PMID: 9212170) NM_214431.1
CYP2S1 CU915811.2 6 GACC01000325.1 N N Ensemble gene ENSSSCG00000003006 is erroneously annotated as CYP2G1P pseudogene.
CYP8B1 CU466505.2, AJ488932.2 13 Ssc.42789 ? Y 194 bp present
DAPK3 FP565601.1 or FP312782.2 2 GACC01000392.1 ? Y Not an identified gene in Ensembl build 10.2.
DCAF16 NC_010450.3 8 Ssc.93733, Dawson Assembly Y Y Not an identified gene in Ensembl build 10.2.
DCXR Ssc.57254, Dawson Assembly
DDA1 Ssc.5538, Dawson Assembly Ensembl gene ENSSSCG00000022518 is annotated as a processed pseudogene.
DDAH2 Ssc.1434 or Ssc.91200 , Dawson Assembly N N
DDIT4 NC_010456.4 14 Ssc.96319, Dawson Assembly Y Y Not an identified gene in Ensembl build 10.2.
DDX41 GACC01000072.1 ? N
DEFB113 NC_010449.4  7 Ssc.78548
DERL2 AY609666.1, Dawson Assembly
DHX33 Ssc.79925, Dawson RNS Seq Assembly N N
DIDO1 Ssc.74743 or Ssc.89174, Dawson RNA Seq Assembly (partial) N N
DISP1 Ssc.17915, GACC01000447.1 Y Y Not an identified gene in Ensembl build 10.2.
DNAJC5 Ssc.43328 N Y Not an identified gene in Ensembl build 10.2.
DOK3 Ssc.83910 or Ssc.97729 or Ssc.16494, Dawson RNA Seq Assembly N
DPH2 6 Ssc.5109
DRG2 AORO01075646.1, AOCR01117516.1 Ssc.6395, Dawson Assembly
DTYMK FP690349.1 15 Ssc.28026, Dawson Assembly
DUSP22 Ssc.11575, Dawson Assembly
E2F2 6 Ssc.87484 or Ssc.49033, Dawson Assembly
ECT2 Ssc.88693, Ssc.43216, Dawson RNA Seq Assembly  N N
EDA2R X Dawson Assembly N N Pseudogene?
EDN2 Ssc.9848 N N
EEF1A2 Ssc.17324 N N
EHMT1 Dawson RNA Seq Assembly (partial) N N
EIF3B GACC01000508.1
EIF3C Ssc.20120, Dawson Assembly
EIF5 GACC01000445.1
ELAVL4 GACC01000416.1 N N
EMD FO203374.4 X Ssc.4513, Dawson Assembly
EMP1 NC_010447.3 5 Ssc.8845 or Ssc.81536 or Ssc.81567, Dawson Assembly
EMR3 FP102312.2 2 GACC01000181.1 N Y Ensembl gene ENSSSCG00000027610, 587 out of 2186 bp present.
ENTPD2 1 Ssc.25350 N N
EPHA10 Ssc.33673 N N
EPN1 AORO01066742.1 Ssc.82851 or Ssc.51945, Dawson Assembly
EPN2 AORO01075704.1, AORO01075707.1 Ssc.95998, Dawson Assembly
EXOC3L2 AC139878.2 Ssc.38043, Dawson RNA Seq Assembly N Y 365 out of 1594 bp present.
FABP4 CU466978.3 4 (PMID: 9880671) Ssc.1089 N N
FAM168B GACC01000301.1
FAM195B Ssc.9326 N
FAM220A Ssc.15550, Dawson Assembly
FAM53A 8 Ssc.62459, Dawson RNA Seq Assembly ? Y 346 out of 2372 bp present, not an identified gene in Ensembl build 10.2.
FAM60A Ssc.44196 or Ssc.7420, Dawson RNA Seq Assembly  N N
FAM71E2 FP245423.2 6 Dawson Assembly Y N
FAM96A NC_010443.3 1 Ssc.19917, Dawson Assembly
FCGR3B Ssc.167 N N
FDX1 CU856101.3 9 Ssc.231 N Y Not an identified gene in Ensembl build 10.2.
FGFRL1 Dawson RNA Seq Assembly N N
FLII Ssc.17271, Dawson RNA Seq Assembly N N
FLNA FO203374.4 X Ssc.21758 or Ssc.74202 or Ssc.56336, Dawson RNA Seq Assembly
FMN1 Ssc.24631 or Ssc.36399, Dawson RNA Seq Assembly  N N Not an identified gene in Ensembl build 10.2.
FNIP2 FP017138.3 GACC01000486.1 ? Y 231 bp present.
FOSB AC142092.2, AF120155.1 6q21 (PMID: 99420217) Dawson Assembly
FOXB1 Dawson Assembly N
FOXD1 Dawson Assembly N
FOXD2 CU463219.3 6 Dawson Assembly (partial)
FOXF1 FP565332.1 6 Ssc.2585, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
FOXG1 BF078023.1, DY413085.1, DY417139.1, EW193910.2, Dawson Assembly
FOXJ2 FS704759.1 or CB483446.1 N N
FTO NC_010448.2 6 Ssc.61206 or Ssc.4542, Dawson Assembly
FTSJ2 Ssc.78556, Dawson Assembly
FUT7 1 Ssc.45573 N N
FZD1 AC104682.2 Ssc.44780, Dawson Assembly N N
FZD2 FP016115.2 12 Ssc.18994, Dawson Assembly N Y Ensembl gene ENSSSCG00000029838  erroneously annotated as a pseudogene.
G6PC Ssc.10452 ? N
GADD45A FP236156.2 6q32 (PMID: 16978188) Ssc.20913 N N
GBGT1 Ssc.53927, Dawson RNA Assembly
GCGR Ssc.22129 N
GDF15 Ssc.43123 N N
GDF6 AC134962.2 4 Ssc.27300, Dawson Assembly (partial) N N
GIMAP5 CU928555.2 18 Ssc.57663, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.  459 out of 1859 bp align.
GJC3 AORO01030011.1, AOCR01139587.1, AJKK01183488.1, NC_010445.3 3 Dawson Assembly Y Ensembl gene ENSSSCG00000007636 is annotated as a novel pseudogene.
GLOD5 Ssc.29913, Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
GLRX2 NC_010452.2 10 Ssc.2066, Dawson Asssembly
GMEB1 GACC01000379.1 N N
GMEB2 Ssc.16417, BX673292.2, Dawson Assembly (partial) N N
GML Ssc.34731, Dawson Assembly N N
GNB1 Ssc.8656, Dawson RNA Seq Assembly
GNE NC_010443.3 1 Ssc.32494 or Ssc.98429, Dawson Assembly
GP9 13 Ssc.25170 N N
GPIHBP1 NC_010451.3 9 Ssc.17890, Dawson Assembly Not an identified gene in Ensembl build 10.2,  827 out of  827 bp present.
GPNMB Ssc.18572 N N
GPR101 CU210850.7 X Dawson Assembly Y N
GPR148L CU607086.2 15 Ssc.28302 Dawson RNA Seq Assembly Y Not an identified gene in Ensembl build 10.2.
GPR157 Ssc.2179
GPR35 Dawson Assembly
GPS1 Ssc.5242, Dawson Assembly
GPX1 FP326740.2 13q21-q41 (PMID: 12139504) Ssc.6352 N Y Not an identified gene in Ensembl build 10.2.
GRAP NC_010454.3 12 Ssc.79623 or Ssc.19043, Dawson Assembly
GRID2IP Dawson Assembly (partial)
GSN CU467561.2 1 Ssc.33496, Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
GSTA2 NC_010449.4 7 Ssc.1205, Dawson Assembly
GTF3C2 GACC01000096.1 N N
GTPBP3 Ssc.49343, Dawson RNA Seq Assembly N N
GTPBP6 X GACC01000096.1 ? N
H6PD GACC01000212.1 N N
HAAO NC_010445.2 Ssc.24461, Dawson Assembly
HAPLN4 FP340360.2 2 Ssc.29226, Dawson RNA Seq Assembly N N
HAS3 FP102475.3 6 Ssc.27881
HBP1 NC_010451.2  9 Ssc.6645, Dawson RNA Seq Assembly
HDAC7 Ssc.2284 or Ssc.29765, Dawson RNA Seq Assembly  N Y Not an identified gene in Ensembl build 10.2.
HEATR3 GACC01000429.1 N N
HFE CT797471.4, CU466447.2 7p Ssc.30739, Dawson Assembly
HGS GACC01000514.1 N Y Not an identified gene in Ensembl build 10.2
HIGD1C EW562416.2, DY433707.1, EW225449.2, EW296928.2, BE031817.1, BE031818.1, Dawson Assembly
HIST1H4A Dawson Assembly
HIVEP3 Hs.403972, Dawson Assembly
HNF4G NC_010446.3 4 Ssc.90452, Dawson Assembly Y N
HPCAL1 CU633182.2 3 Ssc.6349, Dawson Assembly
HRH3 FP325255.2 17 Dawson Assembly N N
HSPA6 Ssc.114 ? Y Not an identified gene in Ensembl build 10.2.
ICT1 NC_010454.2 12 Ssc.11828, Dawson Assembly
IDUA GACC01000321.1 N N
IFI6 6q22-q23 (PMID: 12879363) GACC01000376.1 N N Error, sequences in Unigene Ssc.20101 do not align in Ensembl build 9 or 10.2f.
IFITM2 FP565362.1 17 NM_001246214.1
IFITM3 FP565362.1 2 Ssc.74210 N Y Not an identified gene in Ensembl build 10.2.
IFNAR1 AM229679.1 Ssc.11381 N Y Not an identified gene in Ensembl build 10.2.
IFNGR2  AM229679.1, AC138788.2 13 Ssc.6113 N N
IFNL1 Ssc.74551 N N
IL10RB AC136881.2 13 Ssc.15484 N N
IL11 FP245423.2 6 Dawson Assembly Y N
IL17C JN997405.1 (partial) N N
IL1F10 FP578986.1 1 Ssc.64363 N N
IL1RN FP578986.1 1 Ssc.16250 N N
IL22RA1 FP103067 6 Ssc.47991 or Ssc.51033 N N
IL23A NC_010447.3 5 Ssc.56047, Dawson Assumebly
IL32 Ssc.76833
IL36A Ssc.26901 N N
IL36B Dawson Assembly N N
IL36G Dawson Assembly N N
IL36RN Dawson Assembly N N
IL37  Dawson Assembly (partial) N Y Not an identified gene in Ensembl build 10.2.
IL3RA Ssc.28066, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
ING5 FP690349.1 15 HX217957.1, BP435366.1, Dawson Assembly.
INHBB AY116585.1 12 or 15 (PMID: 12755822) Ssc.16230 N Y Not an identified gene in Ensembl build 10.2.
INPP5E Ssc.2662, Dawson RNA Seq Assembly N N
INSIG2 NC_010449.4 7 Ssc.85396 or Ssc.30745, Dawson Assembly
IPP GACC01000374.1 N N
IRF2BP2 CU329680.2 14C14 (PMID: 17121613) Ssc.10096, Dawson RNA Seq Assembly Y N
IRF4 7p11–p12 (PMID: 17121613) Ssc.51692, Dawson RNA Seq Assembly N N
IRF8 FP565909.1 6p14-p15 PMID: (17121613) Ssc.5982 or Ssc.32725, Dawson RNA Seq Assembly N Y 298 out of 2336 bp present.
IRS2 CU986275.2 11 Ssc.83756 or Ssc.24696, Dawson RNA seq assembly N Y Ensembl gene ENSSSCG00000023184 severely truncated.
ISYNA1 Ssc.15723, Dawson Assembly Not an identified gene in Ensembl build 10.2.
ITGA7 NC_010447.2, CU855487.2 5 Ssc.2786, Dawson Assembly Y N
ITPRIPL1 GACC01000521.1 N N
IWS1 CU928879.3 15 GACC01000371.1 ? N
JRK Ssc.84913, CJ017733.1, CN156879.1, EW446566.2, DR081932.1, BX914771.2, CN154773.1, EW096531.2, EW105393.2, CA779970.1, EV976162.2, Dawson Assembly
JRKL NC_010451.3 9 Ssc.95727 or Ssc.2287, Dawson RNA Seq Assembly Not an identified gene in Ensembl build 10.2., 3944 out of 3945 bp present.
JUND GACC01000372.1 N N
KCNMB4 NC_010447.3 5 Ssc.99104 or Ssc.40063, Dawson Assembly 
KCNQ2 Dawson Assembly (partial) N N
KCTD21 GACC01000320.1 N Y Not an identified gene in Ensembl build 10.2.
KIAA0195 FP312732.2 12 Ssc.28883, Dawson Assembly
KIAA0319L GACC01000523.1 Y 539 out of 4440 bp present
KIAA1161 Ssc.84769, Dawson RNA Seq Assembly  Y Y Not an identified gene in Ensembl build 10.2.
KIAA1683 BF191977.1, CV876658.1,CX064798.1, Dawson Assembly Not an identified gene in Ensembl build 10.2, 637 out of 5,098 bp present.
KIN Ssc.14443, Dawson Assembly N
KLF14 18 Ssc.73594 ? Y Annotated as a pseudogene in Ensembl build 10.2.
KLF2 Ssc.9877, Dawson Assembly
KLHDC1 NC_010443.3 1 Ssc.44377 or Ssc.100226 or Ssc.96672, Dawson Assembly Y N
KLHL11 GACC01000319.1 N Y 217 bp out of 2578 bp present
KLK10 AC148863.3 6 Ssc.69757, Dawson Assembly N N
KLK11 AC148863.3 6 BI401603.1, Dawson Assembly N N
KLK12 AC148863.3 6 Dawson Assembly N N
KLK13 AC148863.3 6 Ssc.101625, Dawson Assembly N N
KLK5 AC148863.3 6 HX228705.1, EW441388.2, Dawson Assembly N N
KLK6 AC148863.3 6 Ssc.42419, Dawson Assembly N N
KLK7 AC148863.3 6 Ssc.51251, Dawson Assembly N N
KLK8 AC148863.3 6 Dawson RNA Seq Assembly  N N
KLK9 AC149292.15 Dawson Assembly N N
LASP1 GACC01000525.1 N
LBR GACC01000526.1 N Y Not an identified gene in Ensembl build 10.2. Loci highly fragmented.
LCNL1 NW_003541079.1 Ssc.22540, Dawson Assembly
LETMD1 Ssc.49093, Dawson Assembly
LGALS3BP FP016140.2 or FP565648.1 12 GACC01000527.1 N Y Not an identified gene in Ensembl build 10.2.
LLGL2 NC_010454.2 12 Ssc.22143, Dawson Assembly Y N
LMOD1 NC_010452.2 10 Ssc.67976, Dawson Assembly Y N
LOC474164 AY762599.1 N N
LPIN2 NC_010448.2 6 Ssc.19807 or Ssc.829 or Ssc.83916, Dawson RNA Se Assembly
LPL NW_003538043.2 14 Ssc.16335 or Ssc.95883, Dawson Assembly
LPP Ssc.4274, Dawson RNA Seq Assembly  ? Y
LRRC25 Dawson RNA Seq Assembly
LRRC48 Ssc.34311, Dawson Assembly
LSM4 Ssc.11985, Dawson Assembly
LSP1 Ssc.4801 N N
LTBP4 FP325213.2 6 Ssc.3233, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
LTK 1 Ssc.79611 N Y Not an identified gene in Ensembl build 10.2.
LY6D Ssc.9384 or Ssc.97277, Dawson Assembly Not an identified gene in Ensembl build 10.2, 652 out of 722 bps present.
LY6E Ssc.863 N N
LY6G6C AL773591.7 7 Ssc.2091, Dawson Assembly
LY6G6D AL773591.7 7 Ssc.63144
LY6K AORO01071953.1 Dawson Assembly
LY86 CT757494.5 7p11-p12 (PMID: 15025593) Ssc.23404 N N
LY9L2 CU633282.2 4 Ssc.17850, Dawson Assembly Y Y Not an identified gene in Ensembl build 10.2.
LY9L3 4 Ssc.70114, Dawson Assembly Y Y Not an identified gene in Ensembl build 10.2.
LYN CU467744.2 or CU407092.2 4 Ssc.24773 Y Y Partial sequence (3344 out of 3454 bp represented), full ORF not represented
LYNX1 Ssc.77346, Dawson Assembly
LYPD2 Ssc.92125, Dawson Assembly
MADCAM1 Ssc.18928 N N
MAF CU929930.2 6 Ssc.84917 N Y Not an identified gene in Ensembl build 10.2.
MAFG Ssc.27287, Dawson RNA Seq Assembly (partial) N N
MANEAL Ssc.48965, Dawson Assembly (partial)
MAP2K3 GACC01000368.1 N N
MAPK11 Dawson Assembly N N
MAPK7 GACC01000411.1 N Y Not an identified gene in Ensembl build 10.2.
MBD4 GACC01000366.1 N N
MBLAC1 FP565623.1 3 Ssc.11893, Dawson Assembly
MCM6 GACC01000458.1 N Y Not an identified gene in Ensembl build 10.2. Loci highly fragmented.
MCM7 FP565623.1 3 Dawson Assembly
MED22 Ssc.4234, Dawson RNA Seq Assembly ? N
METTL7B NC_010447.2, CU855487.2 5 Ssc.33491, Dawson Assembly
MFN1 GACC01000456.1 n Y Not an identified gene in Ensembl build 10.2.
MGST1 CU468095.2 5q25 (PMID: 12519967) Ssc.51886 N N
MICALCL GACC01000316.1 N N
MIEF2 Ssc.90917, Dawson RNA Seq Assembly 
MINA GACC01000457.1
MIS12 Ssc.4109, Dawson Assembly
MIS18A FP312846.2 13 Ssc.2953, Dawson Assembly
MLLT6 Ssc.78880 or Ssc.75790, Dawson RNA Seq Assembly N N
MLYCD FJ263687.1 Ssc.18522 N N
MMP26 CU582945.2 9 Dawson Assembly (partial) Y Not an identified gene in Ensembl build 10.2.  May be a transcribed pseudogene.
MMP28 Ssc.40202, Dawson RNA Seq Assembly Y N
MNT Dawson RNA Seq Assembly Y Not an identified gene in Ensembl build 10.2.
MOAP1 CT737384.6 7 Ssc.18240, Ssc.82936, Dawson RNA Seq Assembly  N Y Not an identified gene in Ensembl build 10.2.  May be a transcribed pseudogene.
MOGAT3 Dawson Assembly (partial)
MPRIP GACC01000317.1 N N
MPV17 CU914286.2 3 Ssc.19483, Dawson Assembly
MRAP FP312846.2 13 Ssc.12085, Dawson Assembly Y Y Not an identified gene in Ensembl build 10.2.
MRPL34 Ssc.17320
MS4A10 NC_010444.3 2 Ssc.70208, Dawson RNA Seq Assembly N Y Not an identified gene in Ensembl build 10.2.
MTG2 Ssc.1334, Dawson Assembly
MTNR1A NC_010459.4 17 Dawson Assembly Y Y Ensembl gene ENSSSCG00000007002 is annotated as a pseudogene.
MTPN GACC01000012.1
MUC12 Ssc.74506 or Ssc.41885 N N
MUC2 CU928976.18 2 Ssc.58185, Ssc.69830, Dawson Assembly (partial) N Y Ensembl gene ENSSSCG00000012834 is severely truncated.
MUC3A BP153612 N N Ensembl gene ENSSSCG00000020739 erroneously annotated as MUC3A.
MUC5AC 2p14-p17 (PMID: 12879363) Ssc.338,  Dawson Assembly (partial) N Y 423 out of 4050 bp align to non annotated region.
MUC7 CU928399.2 8 Ssc.68694, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
MVB12A Ssc.50137
MVD GACC01000431.1 N N
MYADML2 AORO01168737.1 Dawson Assembly N
MYH4 NC_010454.2 12 Ssc.15909
MYO15A AORO01075656.1 Ssc.93484, Dawson Assembly (partial)
MZF1 Ssc.12495 or Ssc.88663  Dawson Assembly (partial) N N
N4BP2L1 NC_010453.2 11 Ssc.34773 or Ssc.10710, Dawson Assembly Y N
NADK FP565897.1 GACC01000460.1 N N
NAIP NC_010458.3: 51642401-51677227 16 Ssc.99597,  Dawson Assembly N N
NAPRT1 GACC01000363.1 N Y Not an identified gene in Ensembl build 10.2.
NCAN AK392350.1, Ssc.96626, Dawson Assembly N N
NCR3LG1 FP089535.2, CU856109.2 2 Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
NDST1 FP565603.1 2 GACC01000362.1
NEU4 Dawson Assembly (partial)
NFAM1 CU639393.2 5 Ssc.32774, Dawson Assembly
NIPA1 Ests, Dawson RNA Seq Assembly
NIPA2 GACC01000462.1 N N
NKAIN4 EW103721.2 N N
NKD2 Ssc.71035, Dawson Assembly
NKPD1 EW138027.2, Dawson Assembly (partial) N N
NKX1-1 Dawson Assembly (partial)
NLRP1 Ssc.37530, GACC01000190.1 N N Not an identified gene in Ensembl build 10.2.
NLRP14 CU972397.2 9 Dawson Assembly (partial) N Y 4493 bp assembly, Not an identified gene in Ensembl build 10.2.
NLRP7 Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
NMS NC_010445.3 3 Dawson Assemby Not an identified gene in Ensembl build 10.2.
NOD2 AC146663 7 (CR974450) Ssc.61109 N N
NODAL Ssc.42666 ? Y Not an identified gene in Ensembl build 10.2.
NOG NC_010454.1 12 Ssc.42737, Dawson Assembly
NOL7 GACC01000360.1 N N
NOS1 Ssc.89270, Dawson Assembly Y N
NOTCH1 Ssc.51689 or Ssc.58523, Dawson RNA Seq Assembly  ? Y Not an identified gene in Ensembl build 10.2.
NOTUM AORO01090760.1 JZ563262.1, Dawson Assembly (partial) N
NPB Ssc.82498 N
NPBWR2 Dawson Assembly N
NPDC1 Ssc.52088, Dawson Assembly N N
NUP88 Ssc.3720, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2, 338 out of 2,474 bp present.
NUPL1 11 GACC01000358.1 N Y Not an identified gene in Ensembl build 10.2.
OBP2B Dawson RNA Assembly
OPA3 AC142092.2 6 HX234876.1, BX918365.2, dawson Assembly
OR10P1 AOCR01081530.1, NW_003536970.1 Dawson Assembly
OR2AP1 AOCR01081528.1 Dawson Assembly
OS9 Ssc.857, Dawson RNA Seq Assembly
OSBPL2 FP325255.2 17 GACC01000357.1 N N
OXLD1 AORO01090803.1 Ssc.26262, Dawson Assembly
P4HB Ssc.20598, Dawson Assembly N
PABPC4L 8 Dawson Assembly Y Ensembl gene ENSSSCG00000009067 is annotated as a processed pseudogene.
PACS2 Ssc.25846 or Ssc.75911, Dawson RNA Seq Assembly
PAPSS1 FP089689.2 8 GACC01000356.1, Ssc.38084 ? Y 726 bp out of 2845 bp present, not an identified gene in Ensembl build 10.2.
PCDH18 NC_010450.2 8 Ssc.94560 or Ssc.96948 or Ssc.99824, Dawson Assembly Y N
PCMTD2 GACC01000355.1 N N
PCYT2 Ssc.2678 Y Not an identified gene in Ensembl build 10.2.
PDCD1 FP690349.1 15 Ssc.44589 N N
PGPEP1 Ssc.29667, Dawson Assembly N
PHF3 GACC01000465.1 N N
PHF5A Ssc.4115
PIEZO1 Ssc.54426, Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
PIGK FP236496.3, FN673762.1 6 Ssc.42523, Dawson Assembly
PIGW 12 GACC01000315.1 N N
PKNOX1 GACC01000353.1 N N
PLCXD1 FO081902.4 Y Ssc.29001 N N
PLEC GACC01000049.1 N N
PLVAP FP578985.1 2 Ssc.3645, Dawson Assembly
PLXNB2 Ssc.29883 or Ssc.4084, Dawson RNA Seq Assembly N N
PMPCA Ssc.57966, Dawson RNA Seq Assembly Not an identified gene in Ensembl build 10.2, 1065 out of 3002 bp present.
POLRMT GACC01000352.1 ? N
POMK GACC01000341.1 N N
POU2F2 L03842 6q21 (PMID: 12519967) Ssc.145 N N
POU6F2 Ssc.31838, Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
PPDPF GACC01000351.1 N N
PPM1N AC142092.2 6 Ssc.100409 or Ssc.53159, Dawson Assembly
PPP1R27 Ssc.18429 N
PPP1R37 BX926540.1, Dawson Assembly N N
PPP2R3B X Dawson RNA Seq Assembly N N
PPP2R3C  Ssc.22172, Dawson RNA Seq Assembly
PPP4C 3 GACC01000350.1 N N
PR39 13q21 (PMID: 95350216) NM_214450.1 Not an identified gene in Ensembl build 10.2.
PRODH GACC01000467.1
PRSS38 FP102231.7 2 XM_003354166.2 N Y
PSCA Ssc.37873, Dawson Assembly
PSD4 GACC01000313.1 N N
PSMB10 6p14-p15 (PMID: 17541830) Ssc.11168 N N
PTCH2 6 Ssc.42865 or Ssc.79469 or Ssc.60581 N Y Not an identified gene in Ensembl build 10.2, 210 bp out of present.
PTGDS Ssc.16187 N N
PTK6 BI340732.1 N N
PURB Ssc.11789 or Ssc.86544, Dawson RNA Seq Assembly Y Not an identified gene in Ensembl build 10.2.
PXN GACC01000299.1 N N
PYCRL Ssc.21861 Not an identified gene in Ensembl build 10.2.
QARS GACC01000298.1 N N
RAB31 DQ020484.1, CU694765.2 6 Ssc.76784 or Ssc.2551 or Ssc.46395, Dawson RNA Seq Assembly Y Not an identified gene in Ensembl build 10.2.
RAC3 Ssc.18507, Dawson Assembly
RAI1 Ssc.51099 or Ssc.32398 N N
RARRES3 Ssc.65291 N N
RDH13 Ssc.19611 N N
REN Ssc.93645 or Ssc.102046, Dawson Assembly ? Y Not an identified gene in Ensembl build 10.2.
RFNG Ssc.27706, Dawson Assembly
RGS19 Ssc.42539, Dawson RNA Seq Assembly
RNASE2 Ssc.68889, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
RNF112 AORO01075715.1 HX217340.1, Dawson Assembly
RNF212 AORO01096119.1 Dawson Assembly (partial)
RNU11 HX245935.1, HX240660.1
RPAIN Ssc.20932, Dawson Assembly
RPL10 FO203374.4 X Ssc.2261, Dawson Assembly
RPL28 FP245423.2 6 Ssc.53823, Dawson Assembly Y N
RSBN1L GACC01000346.1 N N
RSPO1 Ssc.80763, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
RTEL1 BG834085.1, AJ648795.1 N N
RTN2 AC142092.2 6 Ssc.54903
RTN4RL2 NW_003539349.1 Dawson Assembly (partial)
RXRA CU633470.23 1 GACC01000108.1 N N
S100A13 GACC01000126.1 N Y Not an identified gene in Ensembl build 10.2.
SAMD10 HX212523.1 N N
SAPCD2 Dawson Assembly (partial) N
SEC16A GACC01000311.1 N Y Not an identified gene in Ensembl build 10.2. Loci highly fragmented.
SECTM1 FP565492.1 12 Ssc.43115 ? N
SEMA4B CU571213.1 7 Ssc.54152 or Ssc.79157, Dawson RNA Seq Assembly N N Not an identified gene in Ensembl build 10.2.
SEMA7A GACC01000269.1 N N
SERPINB11 Ssc.37102 N Y Not an identified gene in Ensembl build 10.2.
SERPINB12 NC_010443.1 1 AJ668250.1, Dawson Assembly N N
SERPINB13 NC_010443.1 1 Ssc.90633, Dawson Assembly N N
SFPQ Ssc.55638, Dawson RNA Seq Assembly ? N
SFRP4 CU928886.4 9 Ssc.19566, Dawson Assembly
SHC2 Ssc.79304, Dawson Assembly partial
SHISA7  FP245423.2 6 Dawson Assembly Y N
SHKBP1 NC_010448.3 6 Ssc.1484 or Ssc.38253, Dawson RNA Seq Assembly Not an identified gene in Ensembl build 10.2,  988 out of  2347 bp present.
SHMT1 Ssc.15795, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
SIGLEC8 Ssc.73748, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
SIVA1 Ssc.18635, GACC01000340.1 N N
SKI AJ888535.1 Ssc.27983 or Ssc.79174 or Ssc.85117 , Dawson RNA Seq Assembly N N
SLA2 Ssc.49967, Dawson RNA Seq Asssembly
SLC11A2 Ssc.15548, Dawson Assembly N Y 74 out of 1692 bp align in 10.2 to an unplanced genomic scafold GL893457.1|.
SLC12A3 Ssc.75436 or Ssc.79232, Dawson Assembly
SLC17A2 NC_010449.3 7 Ssc.32079, Dawson Assembly
SLC17A3 Ssc.68493, Dawson Assembly
SLC17A9 Ssc.37974 ,Dawson Assembly (partial) N N
SLC25A10 AJKK01249178.1, AOCR01127116.1, AOCR01127113.1 Ssc.24601 N
SLC25A42 Ssc.80985, Dawson Assembly
SLC26A10 Ssc.90856 or Ssc.92955, Dawson RNA Seq Assembly
SLC27A5 NW_003540488.1, NW_003539433.1, NW_003539899.1, NW_003539410.1 Ssc.33785, Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
SLC2A4RG Ssc.58715, Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
SLC2A9 Dawson Assembly
SLC38A7 NC_010448.2 6 Ssc.12425 or Ssc.83495, Dawson Assembly
SLC39A10 Ssc.42049 or Ssc.98354 N N
SLC43A1 Dawson Assembly
SLC43A3 GACC01000164.1 N N
SLC5A11 NC_010445.1 3 Ssc.48700, Dawson Assembly
SLC6A16 Ssc.61440, Dawson Assembly
SLC6A9 FP700148.1 6 Ssc.73719, Dawson Assembly Y Y Not an identified gene in Ensembl build 10.2.
SLC7A5 NW_003538545.1 GACC01000124.1 N Y Not an identified gene in Ensembl build 10.2.
SLC7A6 Ssc.102142 or Ssc.19011 or Ssc.76909, Dawson RNA Seq Assembly N N
SLC9A8 Dawson RNA Seq Assembly  N Y 488 out of 3407 bp present.
SLCO4A1 Ssc.42460, Dawson RNA Seg Assembly
SLURP1 Dawson Assembly (partial) N
SLX1A Ssc.18349 Y Not an identified gene in Ensembl build 10.2.
SMIM17 NC_010448.3 6 Ssc.26390: or Ssc.60839
SMIM3 GACC01000387.1 N N
SMIM6 FP312732.2 12 Ssc.97614, Dawson Assembly Y Not an identified gene in Ensembl build 10.2.
SNAI1 Ssc.19684, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
SNAI3 AORO01014960.1 Dawson Assemby
SNX4 GACC01000338.1 N N
SNX8 Ssc.24935, Dawson Assembly Not an identified gene in Ensembl build 10.2, 991 out of 1441 bp present.
SOX18 Ssc.15360 N Y Not an identified gene in Ensembl build 10.2.
SPACA7 Ssc.47212, NCBI assembly. Sequences in Unigene Ssc.47212 do not lign to an identified gene in Ensembl build 10.2, .758 out of 765 bp present.
SPAG9 CU929012.2 12 Ssc.22622, Dawson RNA Seq Assembly Y Y Partial alignment 672 out of 7647 bp align.
SPAI-2* Ssc.15989
SPATA16 FP102626.2 13 Ssc.34613, Dawson Assembly
SPATA2 Ssc.18268, Dawson RNA Seq Assembly
SPESP1 CU695157.2 1 Ssc.34771 Y Not an identified gene in Ensembl build 10.2., 209 out of 1385 bp present.
SPIB FP102476.3 6 Ssc.19453 Y Not an identified gene in Ensembl build 10.2.
SPON2 Ssc.47648 N N
SPSB1 CU694475.2 6 GACC01000335.1 ? Y 1490 out of 3084 bp present, 3' UTR, not an identified gene in Ensembl build 10.2.
SPTBN1 NC_010445.2 3 Ssc.442 or Ssc.96300 or Ssc.97331, GACC01000040.1
SPTBN2 NC_010444.1 2 Ssc.71138 or Ssc.78981 or Ssc.88795, Dawson Asssembly
SPTBN4 NC_010448.3 6 Dawson Assembly (partial) Not an identified gene in Ensembl build 10.2,  X out of  X bp present.
SRMS Dawson Assembly (partial) N N
SRR Ssc.83576, Dawson Assembly
SSFA2 GACC01000477.1 Y Not an identified gene in Ensembl build 10.2, 359 out of bp present.
ST3GAL6 13 Ssc.44702, Dawson RNA Seq Assembly Y Y Not an identified gene in Ensembl build 10.2.
STK11IP GACC01000336.1 N N
STMN3 Ssc.19606, Dawson Assembly N N
STRA13 Ssc.9383 N
SUGP1 FP340360.2 2 Ssc.8541, Dawson RNA Seq Assembly
SULT1E1 Ssc.82451 N N
SURF1 Ssc.21950, Dawson RNA Assembly
SURF2 Ssc.54218, Dawson RNA Seq Assembly 
SUV420H2 NC_010448.1 6 Ssc.90115, Dawson Assembly Y N
SYNGR2 GACC01000334.1 N N
TAF6 Dawson RNA Seq Assembly N N
TANGO6 Ssc.28206 or Ssc.75951, Dawson RNA Seq Assembly N N
TASP1 Ssc.50291 or Ssc.91402, Dawson RNA Seq Assembly Y Not an identified gene in Ensembl build 10.2.
TAZ X Ssc.49025, Dawson Assembly
TBX6 Ssc.101600, Dawson RNA Seq Assembly N N
TCEA2 Ssc.42001 N N
TCF20 GACC01000308.1 N N
TDRP1 NC_010458.3 16 Ssc.76780,  Dawson Assembly
TEF AJ942918.1,
BX666181.2,
EW137616.2,
EW306220.2,
EW221667.2,
BI338345.1,
EW667045.2,
EW248356.2,
EW343226.2,
BG895753.1,
AJ940763.1,
FS667728.1,
BF441266.1,
EW055081.2,
BQ601112.1,
BF441271.1,
BF712535.1,
BI339888.1,
EV948744.2,
BI340333.1,
CD571953.1,
BX664866.2
CO943941.1,
CO956665.1,
BF712765.1,
EW365637.2,
CO994959.1,
DR082491.1,
EW515941.2,
EV856892.2,
BI403105.1,
EW246045.2,
EV860062.2
TFCP2 GACC01000332.1 N N Ensembl gene ENSSSCG00000026068 for GRHL1 is erroneously annotated as TFCP2.
THEM6 Ssc.82874, BF079727.1, BI344687.1, BI344688.1, DY421877.1, Dawson Assembly
THOC5 GACC01000331.1 N N
TIFAB CU639478.2 2 Ssc.83159 N Y Not an identified gene in Ensembl build 10.2, 202 out of 1249 bp present.
TIGD2 GACC01000307.1
TIGD4 FP565428.1 8 Ssc.16022, Dawson Assemby
TK1 Ssc.24358, Dawson RNA Seq Assembly N N
TK2 6 Ssc.3382, Dawson RNA Seq Assembly  ? Y Not an identified gene in Ensembl build 10.2.
TM6SF2 FP340360.2 2 Ssc.29226, Dawson RNA Seq Assembly N N
TMC6 GACC01000330.1 N N
TMC8 Ssc.28047, Dawson RNA Seq Assembly N N
TMEM150B FP245423.2 6 Ssc.28746, Dawson Assembly Y N
TMEM190 FP245423.2 6 Ssc.81170, Dawson Assembly Y N
TMEM200C AORO01096706.1 Ssc.90924, Dawson Assembly
TMEM50B AC138784.2, AC138788.2, FP326748.2 13 AK235207.1, Dawson Assembly Y Not an identified gene in Ensembl build 10.2., 591 out of 2,037 bp present.
TMEM69 FP700142.1 6 Ssc.9306, Dawson RNA Seq Assembly Y Not an identified gene in Ensembl build 10.2.
TMPPE Dawson RNA Seq Assembly  N N
TNFRSF12A FP312929.2 12 Ssc.1864 N Y
TNFRSF13B Ssc.75870 N N Gene was in build 10.1 (XM_003360568.1)
TNFRSF13C Ssc.97304, Dawson Assembly  N N
TNFRSF18 FP102596.2 6 Ssc.26628 N Y 200 bp out of 840 bp present.
TNFRSF1B Ssc.42189 N N
TNFRSF6B Ssc.21656 N N
TNFSF12 AC130192.4 Ssc.30397 N Y Partial alignment 381 out of 1327 bp align.
TNFSF13 AC130192.4 Ssc.26879 N N
TNNI2 Ssc.54818 or Ssc.56285 or Ssc.56814 N N
TOB2 Ssc.30971, Dawson RNA Seq Assembly ? N
TOP3A  Ssc.26603 or Ssc.28104, Dawson RNA Seq Assembly
TPD52L2 Ssc.2916, Dawson Assembly N Y Not an identified gene in Ensembl build 10.2.
TRAPPC10 FP236619.2 13 GACC01000482.1 N N
TRAPPC6A Ssc.21185, Dawson Assembly N Y 83 out of 766  bp present.
TRIM16 Ssc.12303, Dawson Assembly N N
TRIM28 AK347368.1, Dawson RNA Seq Assembly N N
TRIM38 CT797471.4 7 GACC01000248.1 N N
TRIM54 CU914286.2 3 Ssc.34825, Dawson Assemby
TRIM56 BE236068.1 N N
TRIM71 Ssc.38438, Dawson Assembly (partial) Y Not an identified gene in Ensembl build 10.2.
TRIML1 NC_010459.3 17 Ssc.34270 or Ssc.99913, Dawson Assembly Y N
TRIP13 Ssc.848
TROVE2 NC_010452.2 10 Ssc.28175, Dawson Assembly
TRPM5 Ssc.96353, Dawson Assembly (partial)
TSEN54 NC_010454.2 12 Ssc.25223, Dawson Assembly Y N
TSNARE1 Ssc.96283, Dawson Assembly
TSPAN10 FP565486.1 12 Dawson Assembly
TSPAN32 Dawson Assembly (partial) N
TSR1 NC_010454.1 12 Ssc.22443, Dawson Assembly N N
UAP1L1 Ssc.42581, Dawson Assembly (partial)
UB2D1 NC_010456.2 14 Ssc.43569 or Ssc.14381, Dawson Assembly
UBE2M NW_003540333.1, NW_003538044.1, NW_003540288.1, NW_003537810.1 Ssc.54634
UBE2S FP245423.2 6 Ssc.24422, Dawson Assembly Y N
UCKL1 GACC01000329.1 N Y Not an identified gene in Ensembl build 10.2.
UCN1 HM544135.1 Dawson Assembly
UFSP1 3 Ssc.25767 N Y Not an identified gene in Ensembl build 10.2.
URB1 FP312846.2 13 Ssc.47992, Dawson RNA Seq Assembly N Y Not an identified gene in Ensembl build 10.2. 864 out of 7503 bp present.
USP29 Dawson Assemby
UTS2R FP565492.1 12 Dawson Assembly ? N Not an identified gene in Ensembl build 10.2.
UTY FO082440.1 Y Ssc.27236, Dawson RNA Seq Assembly N N
UVSSA AORO01096099.1, AORO01096098.1, AORO01096097.1, Dawson Assembly
VASP AC142092.2 6 Ssc.55551, Dawson Asssembly
WAP1 Porcine-specific gene. Gene family has undergone extensive duplication in the pig (PMID: 8636131).
WAS Xp13-p11 (PMID: 11435713) Ssc.18550, Dawson, RNA Seq Assembly N N
WDR1 GACC01000034.1 Y Not an identified gene in Ensembl build 10.2.
WDR44 CU406985.7 GACC01000328.1 N N
YPEL2 Ssc.83142 or Ssc.13429, Dawson RNA Seq Assembly  ? Y Not an identified gene in Ensembl build 10.2.
YRDC Ssc.18351, Dawson RNA Seq Assembly  N N
YTHDF1 GACC01000305.1 N N
YY1 GACC01000197.1 N Y Not an identified gene in Ensembl build 10.2.
ZBTB14 Ssc.36405 or Ssc.83659 N N
ZBTB42 AORO01095933.1 EW141031.2, EW502902.2, Dawson Assembly
ZBTB45 Ssc.75839 or Ssc.86336, Dawson Assembl (partial)
ZBTB46 CF180057.1, Dawson partial assembly N Y Not an identified gene in Ensembl build 10.2.
ZC3H12A Ests, Dawson RNA Seq Assembly
ZC3H18 GACC01000484.1 ? N
ZC3H7B Ssc.73759, Dawson RNA Seq Assembly
ZDHHC11 Dawson Assembly
ZFPM1 Dawson Assembly (partial)
ZIM2 AORO01077406.1, AOCR01016650.1 Dawson Assemby
ZMYM1 Ssc.5515, Dawson Assembly
ZMYM6 Ssc.14187 or Ssc.30629,  Dawson Assembly
ZMYM6NB Ssc.17765, Dawson Assembly
ZNF140 Ssc.29275, Dawson RNA Seq Assembly N N
ZNF264 Ssc.48888, Dawson Assembly
ZNF296 Dawson Assembly Y Y Not an identified gene in Ensembl build 10.2.
ZNF3 GACC01000304.1 N N
ZNF304 Ssc.76339, Dawson RNA Seq Assembly  N N
ZNF324 NW_003537004.1 Ssc.75038
ZNF347 Ssc.47415, Dawson RNA Seq Assembly (partial) N
ZNF347L Dawson RNA Seq Assembly  N N
ZNF446 Ssc.50142, Dawson Assembly (partial)
ZNF469 AORO01014977.1 BF080071.1, AW786269.1, DV900403.1, DV900402.1, Dawson Assembly
ZNF512B CX062343.1, BI339618.1, Dawson Assembly
ZNF548 AK392006.1, DN130994.1, BE031180.1, Dawson Assembly
ZNF551 Ssc.2314 Y Not an identified gene in Ensembl build 10.2.
ZNF564 Ssc.28899, Dawson RNA Seq Assembly  N N
ZNF574 FP102936.2 6 Dawson RNA Seq Assembly  ? Y Ensembl gene ENSSSCG00000003037 erroneously annotated as a pseudogene.
ZNF592 Ssc.80226 or Ssc.4173, Dawson Assembly
ZNF654 Ssc.64336, Dawson RNA Seq Assembly  N N
ZNF665L Ssc.49898, GACC01000398.1 N N Porcine-specific gene.
ZNF772 Ssc.87207, Dawson Assembly
ZNF853 ESTs, Dawson Assembly
ZNHIT1 Ssc.33310, Dawson RNA Seq Assembly N Y Not an identified gene in Ensembl build 10.2.
ZSWIM7 NC_010454.3 12 Ssc.85859 or Ssc.61213, Dawson Assembly Y Not an identified gene in Ensembl build 10.2, 364 out of 905 bp present.

Last Modified: 6/11/2014
Footer Content Back to Top of Page