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Lesion Nematode LSU(26-28S) rDNA Maximum Likelihood Phylogeny
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Lesion Nematode LSU(26-28S) rDNA Maximum Likelihood Phylogeny

With links to female descriptions and Genbank accession.

 


outgroup hirschmanni bellli   Hirschmanniella belli U47556
suppoprt value of 69 for species group P. vulnus Pratylenchus teres 2 AF196353
Support value of 69 for species group P. vulnus and P. crenatus Pratylenchus vulnus U47547
Support value of 69 for species group P. vulnus and P. crenatus Pratylenchus crenatus U47549
Support value of 85 for species group P. neglectus and P. zeae. Support value of 30 for species group P. neglectus, P. zeae,P. thornei, P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae, P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeae Pratylenchus neglectus U47548
Pratylenchus zeae AF303950
Support value of 29 for species group P. thornei, P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae, P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeae Pratylenchus thornei U47550
Support value of 97 for species group P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae. Support value of 32 for species group P. hexincisus, P. penetrans, P. arlingtoni, P. fallax, P. convallariae, P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeae Pratylenchus hexincisus AF303949
Support value of 99 for species group P. penetrans, P. arlingtoni, P. fallax, P. convallariae Pratylenchus penetrans U47546
Support value of 100 for species group P. arlingtoni, P. fallax, P. convallariae Pratylenchus arlingtoni 1 AF307328
Support value of 100 for species group P. arlingtoni, P. fallax, P. convallariae Pratylenchus fallax, P convallariae 1 AF264181
Support value of 58 for species group  P. loosi, P. coffeae, P. gutierrezi, P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeae Pratylenchus loosi AF170439
Support value of 67 for species group  P. coffeae and P. gutierrezi Pratylenchus coffeae AF170428 (C4)
Support value of 67 for species group  P. coffeae and P. gutierrezi Pratylenchus gutierrezi AF170442
Support value of 67 for species group  P. scribneri, P. agilis, P. brachyurus and P. pseudocoffeae Pratylenchus scribneri U47551
Support value of 80 for species group P. agilis, P. brachyurus and P. pseudocoffeae Pratylenchus agilis AF196352
Support value of 76 for species group P. brachyurus and P. pseudocoffeae Pratylenchus brachyurus U47553
Support value of 76 for species group P. brachyurus and P. pseudocoffeae Pratylenchus pseuocoffeae AF170444

D3 Tree Manuscript      D2-D3 Tree MS     Thomas Lab D3 Database
    Pratylenchus project at Univ. NE     Literature
1. Nematology MS      2. African Plant Protection MS

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Quartet-Puzzling Maximum Likelihood Molecular Tree generated by PAUP* ver.4.08b (Sinauer Associates, Sunderland, MA) on a Clustal W (European Bioinformatics Institute) alignment using the Hasegawa-Kishino-Yano-1985 model on 308 nucleotides; support values for quartets from 1,000 puzzling steps. Mention of trade name or commercial products is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U. S. Department of Agriculture.

 

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Last Modified: 10/26/2005
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