Projects

Molecular Biology and Genomics of Foodborne Pathogens Appropriated (D)   Accession Number: 410725

Publications

The Complete Genome of the Human Clinical Isolate Campylobacter upsaliensis RM3195 - (Other) - (02-Sep-09)

First multilocus sequence typing scheme for Arcobacter spp. - (Peer Reviewed Journal)

Miller, W.G., Wesley, I.V., On, S., Houf, K., Megraud, F., Wang, G., Yee, E., Srijan, A., Mason, C. 2009. First multilocus sequence typing scheme for Arcobacter spp.. BMC Microbiology. doi:10.1186/1471-2180-9-196

DNA identification and characterization of Campylobacter jejuni and Campylobacter coli isolated from cecal samples of chickens in Grenada - (Peer Reviewed Journal) - (27-Jul-09)

Analysis of the Pan Genome of Campylobacter jejuni Isolates Recovered from Poultry by Pulse-Field Gel Electrophoreis, MLST and rep-PCR Reveals Different Discriminatory Capabilities - (Peer Reviewed Journal)

Wilson, M.K., Lane, A.B., Law, B.F., Miller, W.G., Joens, L.A., Konkel, M.E., White, B.A. 2009. Analysis of the Pan Genome of Campylobacter jejuni Isolates Recovered from Poultry by Pulse-Field Gel Electrophoreis, MLST and rep-PCR Reveals Different Discriminatory Capabilities. Microbial Ecology. DOI 10, 1007/s00248-009-9571-3

Induction of Purple Sulfur Bacterial Growth in Dairy Wastewater Lagoons by Circulation - (Peer Reviewed Journal)

Mcgarvey, J.A., Miller, W.G., Lathrop, J.R., Silva, C.J., Bullard, G. 2009. Induction of Purple Sulfur Bacterial Growth in Dairy Wastewater Lagoons by Circulation. Letters in Applied Microbiology.49:427-433.

Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry - (Proceedings/Symposium)

Fagerquist, C.K., Garbus, B.R., Williams, K.E., Bates, A.H., Boyle, S., Harden, L.A., Miller, W.G., Mandrell, R.E. 2009. Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry.IN: Proceedings of the 57th American Society of Mass Spectrometry Conference, May 31-June 4, 2009, Philadelphia, PA. DVD:A091307.8125ver.1.pdf

Correlation between genotypic diversity, lipooligosaccharide gene locus class variation and Caco-2 invasion potential of Campylobacter jejuni from human and chicken meat origin: a contribution to virulotyping - (Peer Reviewed Journal)

Habib, I., Louwen, R., Uytendaele, M., Houf, K., Vandenberg, O., Nieuwenhuis, E.E., Miller, W.G., Vanbelkum, A., Dezutter, L. 2009. Correlation between genotypic diversity, lipooligosaccharide gene locus class variation and Caco-2 invasion potential of Campylobacter jejuni from human and chicken meat origin: a contribution to virulotyping. Applied and Environmental Microbiology. 75(13):4277-4288.

Clonal population structure and antimicrobial resistance of Campylobacter jejuni from chicken meat in Belgium - (Peer Reviewed Journal)

Habib, I., Miller, W.G., Uyttendaele, M., Houf, K., Dezutter, L. 2009. Clonal population structure and antimicrobial resistance of Campylobacter jejuni from chicken meat in Belgium. Applied and Environmental Microbiology. 75(13):4264-4272.

Examination of Campylobacter jejuni putative adhesins leads to the identification of a new protein, designated FlpA, required for chicken colonization - (Peer Reviewed Journal)

Flanagan, R.M., Neal-Mckinney, J.M., Dhillon, A.S., Miller, W.G., Konkle, M.E. 2009. Examination of Campylobacter jejuni putative adhesins leads to the identification of a new protein, designated FlpA, required for chicken colonization. Infection and Immunity. 77:2399-2407

Rapid Identification of E. coli O157:H7 by "Top-Down" Proteomics Using MALDI-TOF/TOF Mass Spectrometry - (Abstract) - (10-Mar-09)

Autoinducer-2 production in Campylobacter jejuni contributes to chicken colonization - (Peer Reviewed Journal)

Quinones, B., Miller, W.G., Bates, A.H., Mandrell, R.E. 2009. Autoinducer-2 production in Campylobacter jejuni contributes to chicken colonization. Applied and Environmental Microbiology. 75/1:281-285

The complete genome sequence and analysis of the human pathogen Campylobacter lari. - (Peer Reviewed Journal)

Miller, W.G., Wang, G., Binnewies, T.T., Parker, C. 2008. The complete genome sequence and analysis of the human pathogen Campylobacter lari. Foodborne Pathogens and Disease. 5(4):371-386.

Comparative genomic analysis of clinical strains of Campylobacter jejuni from South Africa - (Peer Reviewed Journal)

Quinones, B., Guilhabert, M.R., Miller, W.G., Mandrell, R.E., Lastovica, A.J., Parker, C. 2008. Comparative genomic analysis of clinical strains of Campylobacter jejuni from South Africa. PLoS One. 3(4)e2015_1-e2015_10

High Resolution Genotyping of Campylobacter Using PCR and High-Throughput Mass Spectrometry - (Peer Reviewed Journal)

Hannis, J., Manalili, S., Hall, T., Ranken, R., White, N., Sampath, R., Blyn, L., Ecker, D., Mandrell, R.E., Fagerquist, C.K., Bates, A.H., Miller, W.G., Hofstadler, S. 2008. High Resolution Genotyping of Campylobacter Using PCR and High-Throughput Mass Spectrometry. Journal of Clinical Microbiology.46(4) 1220-1225.

The complete genome sequence and analysis of the Epsilonproteobacterium Arcobacter butzleri. - (Peer Reviewed Journal)

Miller, W.G., Parker, C., Rubenfield, M., Mendz, G.L., Wosten, M.M., Ussery, D.W., Stolz, J.F., Binnewies, T.T., Hallin, P.F., Wang, G., Malek, J.A., Rogosin, A., Stanker, L.H., Mandrell, R.E. 2007. The complete genome sequence and analysis of the Epsilonproteobacterium Arcobacter butzleri. PLoS One. 2(12):e1358.

Ai-2 Signaling in Campylobacter Jejuni and Its Contribution to Chicken Colonization - (Proceedings/Symposium) - (15-Aug-07)

Oxygen requirement and tolerance of Campylobacter jejuni. - (Peer Reviewed Journal)

Kaakoush, N.O., Miller, W.G., De Reuse, H., Mendz, G.L. 2007. Oxygen requirement and tolerance of Campylobacter jejuni. Research in Microbiology. 158(8-9):644-650.

Composite sequence proteomic analysis of protein biomarkers of Campylobacter coli, C. lari and C. concisus for bacterial identification - (Peer Reviewed Journal)

Fagerquist, C.K., Yee, E., Miller, W.G. 2007. Composite sequence proteomic analysis of protein biomarkers of Campylobacter coli, C. lari and C. consisus for bacterial identification. The Analyst. 132(10):1010-1023.

Bacterial population dynamics in diary waste during aerobic and anaerobic treatment and subsequent storage. - (Peer Reviewed Journal)

Mcgarvey, J.A., Miller, W.G., Zhang, R., Ma, Y., Mitloehner, F. Bacterial population dynamics in diary waste during aerobic and anaerobic treatment and subsequent storage. Applied and Environmental Microbiology. 73:193-202

Identification of Disulphide Reductases in Campylobacterales: a Bioinformatics Investigation - (Peer Reviewed Journal)

Kaakoush, N.O., Sterzenbach, T., Miller, W.G., Suerbaum, S., Mendz, G.L. 2007. Identification of disulphide reductases in campylobacterales. Antonie Van Leeuwenhoek. 92(4):429-441

Common Genomic Features of Campylobacter jejuni subsp. doylei Strains Distinguish Them from C. jejuni subsp. jejuni - (Peer Reviewed Journal)

Parker, C., Miller, W.G., Horn, S.T., Lastovica, A.J. 2007. Common Genomic Features of Campylobacter jejuni subsp. doylei Strains Distinguish Them from C. jejuni subsp. jejuni. BMC Microbiology. http://www.biomedcentral.com/1471-2180/7/50

Detection and Genotyping of Arcobacter and Campylobacter Isolates from Retail Chicken Samples by Use of DNA Oligonucleotide Arrays - (Peer Reviewed Journal)

Quinones, B., Parker, C., Janda Jr, J.M., Miller, W.G., Mandrell, R.E. 2007. Detection and Genotyping of Arcobacter and Campylobacter Isolates from Retail Chicken Samples by Use of DNA Oligonucleotide Arrays. Applied and Environmental Microbiology. 73(11)3645-3655

Identification of Genomic Differences Between Campylobacter Jejuni Subsp. Jejuni and Campylobacter Jejuni Subsp. Doylei at the Nap Locus Leads to the Development of a C. Jejuni Subspeciation Multiplex Pcr Method - (Peer Reviewed Journal)

Miller, W.G., Parker, C., Heath, S., Lastovica, A. 2007. Identification of genomic differences between campylobacter jejuni subsp. jejuni and C. jejuni subsp. doylei at the nap locus leads to the development of a C. jejuni subspeciation multiplex pcr method. BioMed Central Microbiology. 7:11.

Clonal Population Structure and Specific Genotypes of Multi-drug Resistant Campylobacter coli from Turkeys. - (Peer Reviewed Journal)

D'Lima, C., Miller, 2007 W.G., Mandrell, R.E., Wright, S.L., Siletsky, R., Carver, D.K., Kathariou, S. Clonal Population Structure and Specific Genotypes of Multi-drug Resistant Campylobacter coli from Turkeys.. Applied and Environmental Microbiology. 73(7) 2156-2164

Campylobacter Insulaenigrae Isolated from Northern Elephant Seals (Mirounga Angustirostris) in California - (Peer Reviewed Journal)

Stoddard, R.A., Miller, W.G., Foley, J.E., Lawrence, J., Gullard, F.M., Conrad, P.A., Byrne, B.A. 2007. Campylobacter insulaenigrae isolated from northern elephant seals (mirounga angustirostris) in california. Applied and Environmental Microbiology. 7(6)1729-1735

Association of Erythromycin Susceptibility and Absence of Intervening Sequences in 23s Ribosomal Rna Genes of Campylobacter Coli Isolated from Turkeys. - (Peer Reviewed Journal)

Chan, K., Miller, W.G., Mandrell, R.E., Kathariou, S. 2007. Association of erythromycin susceptibility and absence of intervening sequences in 23s ribosomal rna genes of campylobacter coli isolated from turkeys.. Applied and Environmental Microbiology. 73(4)1208-1214

Cryptic Plasmids Isolated from Campylobacter Strains Represent Multiple, Novel Incompatibility Groups - (Peer Reviewed Journal)

Miller, W.G., Heath, S., Mandrell, R.E. 2007. Cryptic plasmids isolated from Campylobacter strains represent multiple, novel incompatibility groups. Plasmid. 57(2):108-117.

Comparative Genomic Analysis of Campylobacter Jejuni Strains Reveals Diversity Due to Genomic Elements Similar to Those Present in C. Jejuni Strain Rm1221 - (Peer Reviewed Journal)

Parker, C., Quinones, B., Miller, W.G., Horn, S.T., Mandrell, R.E. 2006. Comparative genomic analysis of Campylobacter jejuni strains reveals diversity due to genomic elements similar to those present in C. jejuni strain RM1221. Journal of Clinical Microbiology.44:11:4125-4135

Sub-Speciating Campylobacter Jejuni by Proteomic Analysis of Its Protein Biomarkers and Their Post-Translational Modifications - (Peer Reviewed Journal)

Fagerquist, C.K., Bates, A.H., Heath, S., King, B.C., Garbus, B.R., Harden, L.A., Miller, W.G. Sub-speciating campylobacter jejuni by proteomic analysis of its protein biomarkers and their post-translational modifications. Journal of Proteome Research. 5:10:2527-2538

Bacterial population dynamics of aerobic and anaerobic dairy waste treatment - (Abstract) - (03-May-06)

Comparison of the Chemical Composition and Bacterial Population Structure of Dairy Waste Before and after Aerobic and Anaerobic Digestion - (Abstract)

Mcgarvey, J.A., Miller, W.G., Zhong, R., Mitloehner, F., Lathrop, J.R., Ma, Y. 2006. Comparison of the chemical composition and bacterial population structure of dairy waste before and after aerobic and anaerobic digestion. [Abstract]. American Society of Microbiology. Poster Q333.

Bacterial Population Dynamics During Waste Treatment and Subsequent Storage in Simulated Wastewater Holding Lagoons. - (Abstract)

Mcgarvey, J.A., Miller, W.G., Mitloehner, F., Ruihong, Z., Yangu, M. 2006. Bacterial population dynamics during waste treatment and subsequent storage in simulated wastewater holding lagoons [ Abstract]. Poster B1102.

Bacterial population dynamics during waste treatment and subsequent storage in simulated wastewater holding lagoons. - (Abstract) - (06-Mar-06)

Surface Sanitization of Cantaloupes Using Thymol/cinnamaldehyde - (Proceedings/Symposium)

Mcgarvey, J.A., Barak Cunningham, J.D., Miller, W.G. 2005. Surface sanitization of cantaloupes using thymol/cinnamaldehyde. California Melon Research Board Annual Meeting, November 20-23, 2005, Hermosilla, MX.

Bacterial Population Structure of Dairy Wastewaters - (Abstract)

Mcgarvey, J.A., Miller, W.G., Sanchez, S., Silva, C.J. 2005. Bacterial population structure of dairy wastewaters [abstract]. International Union of Microbiological Societies, July 23-28, 2005, San Francisco, CA. Poster No. B1102.

Emerging Campylobacter Species - (Book/Chapter)

Mandrell, R.E., Miller, W.G. 2006. Emerging campylobacter species. Book Chapter. Campylobacter, Motarjemi Y and Adams, M.D.(editors) Woodhead Publishing, Cambridge, UK 476-521.

Bacterial and Chemical Composition of Dairy Wastewater - (Abstract)

Mcgarvey, J.A., Miller, W.G., Sanchez, S., Silva, C.J. 2005. Bacterial and chemical composition of dairy wastewater [abstract]. American Society for Microbiology General Meeting, 6/5-6/9/05, Atlanta, GA. P. 008.

Genomic and Proteomic Identification of a Dna-Binding Protein Used in the "fingerprinting" of Campylobacter Species and Strains by Maldi-Tof-Ms Protein Biomarker Analysis - (Peer Reviewed Journal)

Fagerquist, C.K., Miller, W.G., Harden, L.A., Bates, A.H., Vensel, W.H., Wang, G., Mandrell, R.E. 2005. Genomic and proteomic identification of a dna-binding protein used in the "fingerprinting" of campylobacter species and strains by maldi-tof-ms protein biomarker analysis. Analytical Chemistry. web release 6/25/05, 77:4897-4907

Speciation of Campylobacter Coli, C. Jejuni, C. Helveticus, C. Lari, C. Sputorum, and C. Upsaliensis by Matrix-Assisted Laser Desorption Ionization-Time of Flight (Maldi-Tof) Mass Spectrometry - (Peer Reviewed Journal)

Mandrell, R.E., Harden, L.A., Bates, A.H., Miller, W.G., Haddon, W.F., Fagerquist, C.K. 2005. Speciation of campylobacter coli, c. jejuni, c. helveticus, c. lari, c. sputorum, and c. upsaliensis by matrix-assisted laser desorption ionization-time of flight (maldi-tof) mass spectrometry. Applied and Environmental Microbiology. 71:10 p. 6292-6307

Comparison of Bacterial Populations and Chemical Composition of Dairy Wastewater Held in Circulated and Stagnant Lagoons - (Peer Reviewed Journal)

Mcgarvey, J.A., Miller, W.G., Sanchez, S., Silva, C.J., Whitehand, L.C. 2005 Comparison of bacterial populations and chemical composition of dairy wastewater held in circulated and stagnant lagoons [abstract]. Journal of Applied Microbiology. 99(10):867-877.

Comparison of Circulated and Stagnant Dairy Wastewaters - (Abstract)

McGarvey, J.A., Miller, W.G., Sanchez, S. 2005. Comparison of circulated and stagnant dairy wastewaters [abstract]. International Conference on Environmental, Industrial and Applied Microbiology, March 15-18, 2005, Badajoz, Spain. P. 71

Comparison of Campylobacter Jejuni Los Biosynthesis Loci from a Variety of Sources - (Peer Reviewed Journal)

Parker, C., Horn, S.T., Gilbert, M., Miller, W.G., Woodward, D., Mandrell, R.E. Comparison of campylobacter jejuni los biosynthesis loci from a variety of sources. Journal of Clinical Microbiology. 43:2771-2781.

Extended Multilocus Sequence Typing System for Campylobacter Coli, C. Lari, C. Upsaliensis, and C. Helveticus. - (Peer Reviewed Journal)

Miller, W.G., On, S., Wang, G., Fontanoz, S., Lastovica, A., Mandrell, R.E. 2005. Extended multilocus sequence typing system for campylobacter coli, c. lari, c. upsaliensis, and c. helveticus. Journal of Clinical Microbiology. 43(5).2315-2329.

Production of Autoinducer-2 in Salmonella Enterica Serovar Thompson Contributes to Its Fitness in Chickens But Not on Cilantro Plant Leaf Surfaces - (Peer Reviewed Journal)

Brandl, M., Miller, W.G., Bates, A.H., Mandrell, R.E. 2005. Production of autoinducer-2 in salmonella enterica serovar thompson contributes to its fitness in chickens but not on cilantro plant leaf surfaces. Applied and Environmental Microbiology. 71(5):2653-2662.

Diversity of Campylobacter Jejuni Type I Restriction-Modification Loci. - (Peer Reviewed Journal)

Miller, W.G., Pearson, B.M., Wells, J.M., Kapitonov, V.V., Mandrell, R.E. 2005. Diversity of campylobacter jejuni type i restriction-modification loci. Microbiology. 151:337-351.

Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species - (Peer Reviewed Journal)

Fouts, D.E., Mongodin, E.F., Mandrell, R.E., Miller, W.G., Rasko, D.A., Ravel, J., Brinkac, L.M., Deboy, R.T., Parker, C., Daugherty, S.C. 2005. Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species. PLoS Biology 3(1):e15.

Differentiation of Campylobacter Coli, Campylobacter Jejuni, Campylobacter Lari and Campylobacter Upsaliensis Using a Multiplex Pcr Developed from the Nucleotide Sequence of the Lipid a Gene Lpxa. - (Peer Reviewed Journal)

Klena, J.D., Parker, C., Knibb, K., Ibbitt, C., Devane, P.M., Horn, S.T., Miller, W.G., Konkel, M. 2004. Differentiation of campylobacter coli, campylobacter jejuni, campylobacter lari and campylobacter upsaliensis using a multiplex pcr developed from the nucleotide sequence of the lipid a gene lpxa. Journal of Clinical Microbiology. 42(12):5549-5557.

Prevalence of Campylobacter in the Food and Water Supply: Incidence, Outbreaks, Isolation and Detection - (Book/Chapter)

Miller, W.G., Mandrell, R.E. 2005. Prevalence of campylobacter in the food and water supply: incidence, outbreaks, isolation and detection. In: Ketley, J., Konkel, M.E., editors. Campylobacter jejuni: New Perspectives in Molecular and Cellular Biology. Norfolk, UK. Horizon Scientific Press, 101-163.

Fingerprinting of Campylobacter Species and Strains by Mass Spectrometric Identification of Protein Biomarkers - (Proceedings/Symposium)

Fagerquist, C.K., Harden, L.A., Miller, W.G., Fouts, D., Nelson, K., Mandrell, R.E. 2004. Fingerprinting of campylobacter species and strains by mass spectrometric identification of protein biomarkers. In: Proceedings of the 52nd American Society for Mass Spectrometry Conference and Allied Topics. May 23-27, 2004 Nashville, TN. CDROM

Identification of Bacterial Populations in Dairy Wastewaters by Use of 16s Rrna Gene Sequences and Other Genetic Markers - (Peer Reviewed Journal)

McGarvey, J.A., Miller, W., Sanchez, S., Stanker, L.H. 2004. Identification of bacterial populations in dairy wastewaters by use of 16S rRNA gene sequences and other genetic markers. Applied and Environmental Microbiology. 70(7):4267-4275.

Identification of Bacterial Populations in Agricultural Waste Water Using 16s Rdna Sequences and Other Genetic Markers. - (Abstract)

Mcgarvey, J.A., Stanker, L.H., Ravva, S.V., Miller, W.G., Sanchez, S. 2004. Identification of bacterial populations in agricultural waste water using 16s rdna sequences and other genetic markers [Abstract]. American Society for Microbiology Meeting. Poster Q030.

Bacterial Analysis of Dairy Wastewater, a Molecular Approach - (Proceedings/Symposium)

McGarvey, J.A., Ravva, S.V., Stanker, L.H., Miller, W.G., Sanchez, S. Bacterial analysis of dairy wastewater, a molecular approach. Meeting Abstract.

Colonization of Arabidopsis Thaliana with Salmonella Enterica and Enterohemorrhagic Escherichia Coli 157:h7 and Competitian by Enterobactor Asburiae - (Peer Reviewed Journal)

COOLEY, M.B., MILLER, W.G., MANDRELL, R.E. COLONIZATION OF ARABIDOPSIS THALIANA WITH SALMONELLA ENTERICA AND ENTEROHEMORRHAGIC ESCHERICHIA COLI 157:H7 AND COMPETITIAN BY ENTEROBACTOR ASBURIAE. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2003. v 68(8) p.4915-4926