Page Banner

United States Department of Agriculture

Agricultural Research Service

Related Topics

John Michael Bonman (Mike)
Small Grains and Potato Germplasm Research
Supervisory Research Plant Pathologist

Phone: (208) 397-4162 ext. 108
Fax: (208) 397-4165
1691 S 2700 W
ABERDEEN, ID, 83210

Projects
Assessing Water and Nitrogen Use Efficiency in NSGC Core Accessions
General Cooperative Agreement (A)
  Accession Number: 421078
Improving Sustainability of Rainbow Trout Production by Integrated Development of Improved Grains, Feeds, and Trout
Appropriated (D)
  Accession Number: 418763
Genetic Resource Management of National Small Grains Collection and Associated Information
Appropriated (D)
  Accession Number: 424394
Analysis of the Biochemical Pathway and Genetics of Seed Phytate in Barley
Appropriated (D)
  Accession Number: 424520
Genetic Improvement of Barley and Oats for Enhanced Quality and Biotic Stress Resistance
Appropriated (D)
  Accession Number: 424532
Potato Genetic Improvement for Western U.S. Production
Appropriated (D)
  Accession Number: 424904
Triticeae Cap Project
Reimbursable (R)
  Accession Number: 421024
Finding and Deploying Genes Confering Durable Resistance to Barley Stripe Rust
Specific Cooperative Agreement (S)
  Accession Number: 421082

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Genome-wide association study reveals novel quantitative trait loci associated with resistance to multiple leaf spot diseases of spring wheat - (Peer Reviewed Journal)
Gurung, S., Mamidi, S., Bonman, J.M., Xiong, M., Brown Guedira, G.L., Adhikari, T.B. 2014. Genome-wide association study reveals novel quantitative trait loci associated with resistance to multiple leaf spot diseases of spring wheat. PLoS One 9(9): e108179. doi:10.1371/journal.pone.0108179.
High density mapping of a resistance gene to Ug99 from an Iranian landrace - (Peer Reviewed Journal)
Zurn, J.D., Newcomb, M.S., Rouse, M.N., Jin, Y., Shiaoman, C., Sthapit, J., See, D.R., Wanyera, R., Njau, P., Bonman, J.M., Brueggeman, R., Acevedo, M. 2014. High density mapping of a resistance gene to Ug99 from an Iranian landrace. Molecular Breeding. 34:871-881.
The USDA collection of barley landraces and cultivars: genetic diversity, population structure, and potential for genome-wide association studies - (Peer Reviewed Journal)
Munoz-Amatrian, M., Cuesta-Marcos, A., Endelman, J.B., Comadran, J., Bonman, J.M., Bockelman, H.E., Chao, S., Russell, J., Waugh, R., Hayes, P.M., Muehlbauer, G.J. 2014. The USDA collection of barley landraces and cultivars: genetic diversity, population structure, and potential for genome-wide association studies. PLoS One. 9(4):394688. doi:10.137/journal.pone.0094688.
Genetic diversity for stripe rust Resistance in wheat landraces and identification of accessions with resistance to stem rust and stripe rust Reprint Icon - (Peer Reviewed Journal)
Sthapit, J., Newcomb, M.S., Bonman, J.M., Chen, X., See, D.R. 2014. Genetic diversity for stripe rust Resistance in wheat landraces and identification of accessions with resistance to stem rust and stripe rust. Crop Science. DOI: 10.2135/cropsci2013.07.0438.
SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species - (Peer Reviewed Journal)
Oliver, R.E., Tinker, N.A., Lazo, G.R., Chao, S., Jellen, E.N., Carson, M.L., Rines, H.W., Obert, D., Lutz, J.D., Shackelford, I., Korol, A.B., Wight, C., Gardner, K.M., Hattori, J., Beattie, A., Bjornstad, A., Bonman, J.M., Jannink, J., Mitchell Fetch, J.W., Harrison, S., Howarth, C.J., Ibrahim, A., Kolb, F.L., McMullen, M.S., Murphy, J.P., Ohm, H., Rossnagel, B.G., Yan, W., Miclaus, K.J., Hiller, J., Maughan, P.J., Redman-Hulse, R.R., Anderson, J.M., Islamovic, E., Jackson, E.W. 2013. SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species. PLoS One. 8:e58068.
The art of attrition: development of robust oat microsatellites - (Peer Reviewed Journal) - (27-Nov-12)
Genome-wide association analysis in spring wheat identifies QTL associated with resistance to a novel isolate of Pyrenophora tritici-repentis - (Peer Reviewed Journal) - (23-Apr-12)
Field resistance to the Ug99 race group of the stem rust pathogen in spring wheat landraces Reprint Icon - (Peer Reviewed Journal)
Newcomb, M.S., Acevedo, M., Bockelman, H.E., Brown Guedira, G.L., Goates, B., Jackson, E.W., Jin, Y., Njau, P., Rouse, M.N., Singh, D., Waynera, R., Bonman, J.M. 2013. Field resistance to the Ug99 race group of the stem rust pathogen in spring wheat landraces. Plant Disease. 97:882-890.
Multiple disease resistance to four leaf spot diseases in winter wheat accessions from the USDA National Small Grains Collection - (Peer Reviewed Journal) - (20-Mar-12)
Association mapping of quantitative trait loci responsible for resistance to Bacterial Leaf Streak and Spot Blotch in spring wheat landraces Reprint Icon - (Peer Reviewed Journal)
Adhikari, T.B., Gurung, S., Hansen, J., Jackson, E.W., Bonman, J.M. 2012. Association mapping of quantitative trait loci responsible for resistance to Bacterial Leaf Streak and Spot Blotch in spring wheat landraces. The Plant Genome. 5:1-16. doi:10.3835/plantgenome2011.12.0032.
Pathogenic and genetic diversity of Xanthomonas translucens pv. undulosa populations in North Dakota Reprint Icon - (Peer Reviewed Journal)
Adhikari, T.B., Gurung, S., Hansen, J.M., Bonman, J.M. 2012. Pathogenic and genetic diversity of Xanthomonas translucens pv. undulosa populations in North Dakota. Phytopathology. Vol. 102, No. 4, 2012.
Identification of novel genomic regions associated with resistance to Pyrenophora tritici-repentis races 1 and 5 in spring wheat landraces using association analysis Reprint Icon - (Peer Reviewed Journal)
Gurung, S., Mamid, S., Bonman, J.M., Jackson, E.W., Del Rio, L.E., Acevedo, M., Adhikari, T.B. 2011. Identification of novel genomic regions associated with resistance to Pyrenophora tritici-repentis races 1 and 5 in spring wheat landraces using association analysis. Theoretical and Applied Genetics. 123:1029-1041.
Association mapping of quantitative resistance to phaeosphaeria nodorum in spring wheat landraces from the USDA National Small Grains Collection Reprint Icon - (Peer Reviewed Journal)
Adhikari, T., Jackson, E.W., Gurung, S., Hansen, J., Bonman, J.M. 2011. Association mapping of quantitative resistance to phaeosphaeria nodorum in spring wheat landraces from the USDA National Small Grains Collection. Phytopathology. 101(11):1301-1310.
Identification of New Sources of Resistance to Xanthomonas translucens pv. undulosa in Winter Wheat Reprint Icon - (Peer Reviewed Journal)
Adhikari, T.B., Hansen, J.M., Gurung, S., Bonman, J.M. 2011. Identification of New Sources of Resistance to Xanthomonas translucens pv. undulosa in Winter Wheat. Plant Disease. PDIS-10-10-0760-RE.R2.
Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology Reprint Icon - (Peer Reviewed Journal)
Oliver, R.E., Lazo, G.R., Lutz, J.D., Rubenfield, M.J., Tinker, N.A., Anderson, J.M., Wisniewski-Morehead, N.H., Adhikary, D., Jellen, E.N., Maughan, P.J., Brown Guedira, G.L., Chao, S., Beattie, A.D., Carson, M.L., Rines, H.W., Obert, D.E., Bonman, J.M., Jackson, E.W. 2011. Model SNP development based on the complex oat genome using high-throughput 454 sequencing technology. Biomed Central (BMC) Genomics. 12:77.
Registration of the BISON genetic stocks in Hordeum vulgare L. Reprint Icon - (Peer Reviewed Journal)
Verhoeven, E.C., Bonman, J.M., Bregitzer, P.P., Brunick, B., Cooper, B., Corey, A.E., Cuesta-Marcos, A., Filichkina, T., Mundt, C.C., Obert, D.E., Rossnagel, B., Richardson, K.L., Hayes, P.M. 2011. Registration of the BISON genetic stocks in Hordeum vulgare L. Journal of Plant Registrations. 5:135-140.
Inferring geographic origin of barley accessions using molecular markers Reprint Icon - (Peer Reviewed Journal)
Bonman, J.M., Gu, Y.Q., Coleman Derr, D., Jackson, E.W., Bockelman, H.E. 2010. Inferring geographic origin of barley accessions using molecular markers. Genetic Resources and Crop Evolution. DOI: 10.1007/s10722-010-9574-4.
Development of oat-based markers from barley and wheat microsatellites. Reprint Icon - (Peer Reviewed Journal)
Oliver, R.E., Obert, D.E., Hu, G., Bonman, J.M., O'Leary-Jepsen, E., Jackson, E.W. 2010. Development of oat-based markers from barley and wheat microsatellites. Genome. 53(6): 458–471.
Identification and Validation of Quantitative Trait Loci for Partial Resistance to Crown Rust in Oat. Reprint Icon - (Peer Reviewed Journal)
Acevedo, M., Jackson, E.W., Chong, J., Rines, H.W., Harrison, S., Bonman, J.M. 2010. Identification and Validation of Quantitative Trait Loci for Partial Resistance to Crown Rust in Oat. Phytopathology. 100(5):511-521.
An improved method to quantify Puccinia coronata f. sp. avenae DNA in the host Avena sativa. Reprint Icon - (Peer Reviewed Journal)
Acevedo, M. , Jackson, E. W. , Sturbaum, A. , Ohm, H. W. and Bonman, J. M.(2010) 'An improved method to quantify Puccinia coronata f. sp. avenae DNA in the host Avena sativa', Canadian Journal of Plant Pathology, 32(2):215-224.
New and Diverse Sources of Multiple Disease Resistnace in Wheat. Reprint Icon - (Peer Reviewed Journal)
Gurung, S., Bonman, J.M., Ali, S., Patel, J., Myrfield, M., Mergoum, M., Singh, P.K., Adhikari, T.B. 2009. New and Diverse Sources of Multiple Disease Resistnace in Wheat. Crop Sci. 49:1655-1666
New and Diverse Sources of Multiple Disease Resistance in Wheat Reprint Icon - (Peer Reviewed Journal)
Gurung, S., Bonman, J.M., Ali, S., Patel, J., Myrfield, M., Mergoum, M., Singh, P.K., Adhikari, T.B. 2009. New and Diverse Sources of Multiple Disease Resistance in Wheat. Crop Sci. 49:1655-1666.
New DArT markers for oat provide enhanced map coverage and global germplasm characterization Reprint Icon - (Peer Reviewed Journal)
Tinker, N.A., Kilian, A., Wright, C.P., Heller-Uszynska, K., Wenzl, P., Rines, H.W., Bjornstad, A., Howarth, C., Jannink, J., Anderson, J.M., Rossnagle, B.G., Stuthman, D.D., Sorrells, M.E., Jackson, E.W., Tuvesson, S., Kolb, F.L., Olsson, O., Federizzi, L.C., Carson, M.L., Ohm, H.W., Molnar, S.J., Scoles, G.J., Eckstein, P.E., Bonman, J.M., Ceplitis, A., Langdon, T. 2009. New DArT markers for oat provide enhanced map coverage and global germplasm characterization. BMC Medical Genetics. 10:39.
New DArT markers for oat provide enhanced map coverage and global germplasm characterization - (Peer Reviewed Journal)
Tinker, N.A., Kilian, A., Rines, H.W., Bjornstad, A., Howarth, C.J., Jannink, J., Anderson, J.M., Rossnagel, B.G., Wight, C.P., Stuthman, D.D., Sorrells, M.E., Scoles, G.J., Eckstein, P.E., Ohm, H.W., Jackson, E.W., Tuvesson, S., Kolb, F.L., Molnar, S.J., Olsson, O., Carson, M.L., Ceplitis, A., Bonman, J.M., Federizzi, L., Langdon, T. 2009. New DArT markers for oat provide enhanced map coverage and global germplasm characterization. Biomed Central (BMC) Genomics. 10(39):1471-2164.
QTLs Affecting a-Tocotrienol, a-Tocopherol, and Total Tocopherol Concentrations Detected in the Ogle/TAM O-301 Oat Mapping Population. Reprint Icon - (Peer Reviewed Journal)
Jackson, E.W., Wise, M., Bonman, J.M.,Obert, D.E., Hu, G. and Peterson. D.M.. 2008. QTLs Affecting -tocotrienol, -tocopherol, and total tocopherol concentrations detected in the Ogle/TAM O-301 oat mapping population. Crop Science 48:2141-2152.
A detached leaf method for propagating Puccinia coronata races and assessing crown rust resistance in oat (Avena sativa L.) Reprint Icon - (Peer Reviewed Journal)
Jackson, E.W., Obert, D.E., Chong, J., Avant, J., Bonman, J.M. A detached leaf method for propagating Puccinia coronata races and assessing crown rust resistance in oat (Avena sativa L.). Plant Pathology 92:1400-1406
Origin of barley accessions with multiple disease resistance determined by SSR analysis. Reprint Icon - (Abstract Only)
Bonman, J.M., Gu, Y., Coleman Derr, D., Jackson, E.W., Chao, S., Bockelman, H.E. 2008. Origin of barley accessions with multiple disease resistance determined by SSR analysis.. International Congress of Plant Pathology Abstracts and Proceedings.
Qualitative and Quantitative trait loci conditioning resistance to Puccinia coronata races NQMG and LGCG in the oat (Avena sativa L.) cultivars Ogle and TAM O-301 Reprint Icon - (Peer Reviewed Journal)
Jackson, E.W., Obert, D.E., Hu, G., Menz, M., Bonman, J.M. 2008. Qualitative and Quantitative trait loci conditioning resistance to Puccinia coronata races NQMG and LGCG in the oat (Avena sativa L.) cultivars Ogle and TAM O-301. Theoretical and Applied Genetics.v116:517-527
Field effectiveness of individual genes in the Pc58 crown rust resistance gene complex and subsequent SNP marker development to facilitate utilization - (Abstract Only) - (09-Oct-07)
Alternative approaches for measuring oat crown rust to improve resistance mapping - (Proceedings) - (01-Oct-07)
Geographic Distribution of Stem Rust Resistance in Wheat Landraces Reprint Icon - (Peer Reviewed Journal)
Bonman, J.M., Bockelman, H.E., Jin, Y., Hijmans, R.J., Gironella, A. 2007. Geographic Distribution of Stem Rust Resistance in Wheat Landraces. Crop Science. 47:1955-1963.
Disease resistance from the USDA National Small Grains collection -- past, present, and future. Reprint Icon - (Abstract Only)
Bonman, J.M., Bockelman, H.E., Goates, B. 2007. Disease resistance from the USDA National Small Grains collection -- past, present, and future.. Phytopathology.
Characterization and Mapping Oat Crown Rust Resistance Using Three Assessment Methods Reprint Icon - (Peer Reviewed Journal)
Jackson, E.W., Obert, D.E., Menz, M., Hu, G., Avant, J.B., Chong, J., Bonman, J.M. 2007. Characterization and mapping oat crown rust resistance using three assessment methods. Phytopathology.p.1063-1070
Expansion of Pcr-Based Marker Resources in Oat by Surveying Genomic-Derived Ssrs from Barley and Wheat Reprint Icon - (Peer Reviewed Journal)
Hu, G., Jackson, E.W., Bonman, J.M. 2007. Expansion of pcr-based marker resources in oat by surveying genomic-derived ssrs from barley and wheat. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. Crop Sci. 47:2004-2012 (2007).
Enlargement of Pcr-Based Marker Resources in Oat by Surveying Genomic-Derived Ssrs from Barley and Wheat Reprint Icon - (Abstract Only)
Hu, G., Jackson, E.W., Bonman, J.M. 2006. Enlargement of pcr-based marker resources in oat by surveying genomic-derived ssrs from barley and wheat. American Oat Workers Conference Proceedings. 52
Small Grains: Old Crops with New Uses - (Abstract Only)
Liu, K., Bonman, J.M. 2006. Small grains: old crops with new uses. 97th Annual Meeting and Expo of the American Oil Chemists' Society. (Book of Abstracts).p. 108.
Utilization of a Detached Leaf Method for Cereal Rust Disease Studies. Reprint Icon - (Abstract Only)
Jackson, E.W., Chong, J., Avant, J.B., Bonman, J.M. 2006. Utilization of a detached leaf method for cereal rust disease studies.. Phytopathology S881.
Geographic Distribution of Common and Dwarf Bunt Resistance in Landraces of Triticum Aestivum Subsp. Aestivum - (Peer Reviewed Journal)
Bonman, J.M., Bockelman, H.E., Goates, B., Obert, D.E., Mcguire, P.E., Qualset, C.O., Hijmans, R.J. 2006. Geographic distribution of common and dwarf bunt resistance in landraces of triticum aestivum subsp. aestivum . Crop Science.
Assessment of Genetic Variation in Avena Fatua by DNA Marker Profiling - (Abstract Only)
Vemulapalli, C., Bonman, J.M., Sharma, G., Soliman, K., Kantety, R. 2006. Assessment of genetic variation in avena fatua by dna marker profiling. Plant Genome Conference Proceedings.
A Quantitative Assay of Puccinia Coronata F.SP. Avenae DNA in Avena Sativa. - (Peer Reviewed Journal)
Jackson, E.W., Avant, J.B., Overturf, K.E., Bonman, J.M. 2006. A quantitative assay of puccinia coronata f.sp. avenae dna in avena sativa.. Plant Disease. 90:629-636. DOI:10.1094/PD-90-0629
Development of a Real-Time Polymerase Chain Reaction Assay to Quantify Puccinia Coronata F.SP. Avenae in Avena Sativa - (Abstract Only)
Jackson, E.W., Avant, J.B., Overturf, K.E., Bonman, J.M. 2005. Development of a real-time polymerase chain reaction assay to quantify puccinia coronata f.sp. avenae in avena sativa. American Phytopathology Society. 95 (6):S47
Disease and Insect Resistance in Cultivated Barley Accessions from the USDA National Small Grains Collection. - (Peer Reviewed Journal)
Bonman, J.M., Bockelman, H.E., Steffenson, B. and Jackson. L. 2005. Disease and insect resistance in cultivated barley accessions from the USDA National Small Grains Collection. Crop Sci. 45:1271-1280.
GIS Analysis of Disease Resistant Barley Landraces - (Proceedings)
Bockelman, H.E., Bonman, J.M. GIS analysis of disease resistant barley landraces. American Society of Agronomy. 2005. Annual Meeting Abstracts No. 3766.
Multi-Location Testing to Identify Oat Germplasm with Partial Resistance to Crown Rust - (Proceedings)
Bonman, J.M., Barnett, R.D., Chong, M.J., Harrison, S.A., Herrington, R., Jannink, J., Mcmullen, M.S., Obert, D.E., Shaner, G., Stuthman, D.D. Multi-location testing to identify oat germplasm with partial resistance to crown rust. 7th Oat International Conference Proceedings. P. Peltonen-Sainio and m. Topi-Hulmi (eds.) MTT Agrifood Research Finland, Jokioinen, Finland. 2004 .p. 177-178.
Breeding for Durable Resistance to Rice Blast Disease-Dream Or Reality? J.M. Bonman (1) & H. Leung (2). (1) Usda-Ars, Small Grains & Potato Germplasm Research Unit, Aberdeen, Id;(2)intl Rice Res Institute, Manila, Phillipines - (Proceedings)
Bonman, J.M., Leung, H. 2004. Breeding for durable resistance to rice blast disease-dream or reality? j.m. bonman (1) & h. leung (2). (1) usda-ars, small grains & potato germplasm research unit, aberdeen, id;(2)intl rice res institute, manila, phillipines. Phytopathology 93:S113. Publication no. P-2003-0110-SSA. American Phytopathological Society Annual Meeting.
The 2003 Proceedings for Barley Improvement Conference. - (Proceedings)
Bonman, J. M. 2003. Barley research at USDA-Aberdeen. p. 46-53 In: Proceedings of the 34th Annual Barley Improvement Conference. Log # 145986 http://www.ambainc.org/pub/BIC%202003%20Proceedings.pdf
ARS News Articles
Last Modified: 10/30/2014
Footer Content Back to Top of Page