Rouse, M.N., Nava, I., Chao, S., Jin, Y., Anderson, J. 2012. Identification of markers linked to the Ug99 stem rust resistance gene Sr28 in wheat (Triticum aestivum L.). Theoretical and Applied Genetics. Available: http://www.ncbi.nlm.nih.gov/pubmed/22584633.
Klindworth, D.L., Niu, Z., Chao, S., Friesen, T.L., Jin, Y., Faris, J.D., Cai, X., Xu, S.S. 2012. Introgression and characterization of a goatgrass gene for a high level of resistance to Ug99 stem rust in tetraploid wheat . Genes, Genomes, Genetics. 2:665-673.
Cai, X., Elias, E., Xu, S.S., Kianian, S., Zhong, S., Chao, S. 2011. Fusarium head blight resistance in durum wheat – progress and challenge. Meeting Abstract. pg.12.
Zhong, S., Chu, C.G., Xu, S.S., Ali, S., Puri, K.D., Mergoum, M., Chao, S. 2011. Identification and mapping of QTLs for FHB resistance in a synthetic hexaploid wheat line. Meeting Abstract. pg 64.
Tsilo, T.J., Ohm, J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Quantitative Trait Loci influencing endosperm proteins and end-use quality traits of Hard Red Spring Wheat breeding lines. Czech Journal of Genetics and Plant Breeding. 47:S190-S195.
Chu, C., Niu, Z., Zhong, S., Chao, S., Friesen, T.L., Halley, S., Elias, E.M., Dong, Y., Faris, J.D., Xu, S.S. 2011. Identification and molecular mapping of two QTLs with major effects for resistance to Fusarium head blight in wheat. Theoretical and Applied Genetics. 123(7):1107-1119.
Lowe, I., Jankuloski, L., Chao, S., Chen, X., See, D.R., Dubcovsky, J. 2011. Mapping and validation of Yr48 and other QTL conferring partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat. Theoretical and Applied Genetics. 123:143-157.
Zitzewitz, J., Condon, F., Corey, A., Cuesta-Marcos, A., Filichkin, T., Haggard, K., Fisk, S.P., Smith, K.P., Muehlbauer, G.J., Karsai, I., Veisz, O., Chao, S., Castro, A.J., Gutierrez, L., Hayes, P.M. 2011. The genetics of winterhardiness in barley: Perspectives from genome-wide association mapping. The Plant Genome. 4:76-91.
Cistué, L., Chao, S., Chutimanitsakun, Y., Corey, A., Cuesta-Marcos, A., Echávarri, B., Filichkina, T., Garcia-Mariño, N., Romagosa, I., Hayes, P.M. 2011. Comparative Mapping of the Oregon Wolfe Barley Using Doubled Haploid Lines Derived from Female and Male Gametes. Theoretical and Applied Genetics. 122:1399-1410.
Chao, S., Dubcovsky, J., Dvoral, J., Luo, M., Baenziger, S.P., Matnyazov, R., Clark, D.R., Talbert, L., Anderson, J.A., Dreisigacker, S., Glover, K., Chen, J., Campbell, K., Bruckner, P.L., Rudd, J.C., Haley, S., Carver, B.F., Sims, R., Sorrells, M.E., Akhunov, E.D. 2010. Population-Specific Patterns of Linkage Disequilibrium and SNP Variation in Spring and Winter Polyploid Wheat. Biomed Central (BMC) Genomics. 11:727.
Tsilo, T.J., Simsek, S., Ohm, J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Quantitative Trait Loci Influencing End-use Quality Traits of Hard Red Spring Wheat Breeding Lines. Genome. 54:460-470.
Munoz-Amatriain, M., Xiong, Y., Schmitt, M., Bilgic, H., Budde, A.D., Chao, S., Smith, K., Muehlbauer, G. 2010. Transcriptome analysis of a breeding program pedigree examines gene expression diversity and reveals target genes for malting quality improvement. Biomed Central (BMC) Genomics. 11:653.
Garvin, D.F., Porter, H., Blankenheim, Z., Chao, S., Dill-Macky, R. 2010. A novel genome mutation in wheat increases Fusarium Head Blight resistance [abstract]. In: Proceedings of the 2010 National Fusarium Head Blight Forum, December 7-9, 2010, Milwaukee, Wisconsin. p. 142.
Xu, S.S., Chu, C., Friesen, T.L., Chao, S., Zhong, S., Halley, S., Cai, X., Elias, E.M. 2010. Introgression of two major FHB-resistance QTLs into durum and hard red spring wheat. Meeting Abstract. pg. 172.
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Elias, E., Dubcovsky, J. 2011. Genetic mapping of stem rust resistance gene Sr13 in tetraploid wheat (Triticum turgidum subsp. durum L.). Theoretical and Applied Genetics. 122:649-658.
Chao, S., Oliver, R.E., Lazo, G.R., Tinker, N., Jackson, E.W. 2010. Large-Scale SNP Marker Development and Genotyping in Oat. Proceedings of The 5th European Oat Conference, September 1-3, 2010, Ystad, Sweden. P.43.
Bodo Slotta, T.A., Foley, M.E., Chao, S., Hufbauer, R., Horvath, D.P. 2010. Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites. Weed Science. 58:387-394.
Massman, J., Cooper, B., Horsley, R., Neate, S., Dill-Macky, R., Chao, S., Dong, Y., Muehlbauer, G., Smith, K. 2011. Genome-wide Association Mapping of Fusarium Head Blight Resistance in Contemporary Barley Breeding Germplasm. Molecular Breeding. 27:439-454.
Tsilo, T., Hareland, G.A., Simsek, S., Chao, S., Anderson, J. 2010. Genome Mapping of Kernel Characteristics in Hard Red Spring Wheat Breeding Lines. Theoretical and Applied Genetics 121:717–730
Tsilo, T.J., Hareland, G.A., Chao, S., Anderson, J.A. 2011. Genetic Mapping and QTL Analysis of Flour Color and Milling Yield Related Traits Using Recombinant Inbred Lines in Hard Red Spring Wheat. Crop Science. 51:237-246.
Close, T.J., Bhat, P., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J., Wanamaker, S., Bozdag, S., Roose, M., Moscou, M., Chao, S., Varshney, R., Szucs, P., Sato, K., Hayes, P., Matthews, D.E., Kleinhofs, A., Muehlbauer, G., Deyoung, J., Marshall, D.F., Madishetty, K., Fenton, R.D., Condamine, P., Graner, A., Waugh, R. 2009. Development and Implementation of High-Throughput SNP Genotyping in Barley. Biomed Central (BMC) Genomics. 10:582.
Simons, K.J., Abate, Z., Chao, S., Zhang, W., Rouse, M., Jin, Y., Dubcovsky, J. 2010. Genetic Maps of Stem Rust Resistance Gene Sr13 in Tetraploid Wheat. Proceedings of Plant and Animal Genome Conference. p. 302, San Diego, CA Jan 9-13, 2010.
Tsilo, T.J., Hareland, G.A., Chao, S., Simsek, S., Anderson, J.A. 2009. Quantitative Trait Loci Influencing Grain Hardness in Hard Red Spring Wheat Breeding Lines MN98550 and MN99394. Meeting Abstract 167-7
Chu, C., Chao, S., Cai, X., Zhong, S., Xu, S.S. 2008. Haplotype analysis of genes for Fusarium head blight resistance in tetraploid wheat germplasm. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.156
Zhang, Q., Oliver, R.E., Mcarthur, R.I., Chao, S., Stack, R.W., Zhong, S., Xu, S.S., Cai, X. 2008. Introgression of FHB Resistance from Alien Species-Derived Lines into Spring Wheat. Meeting Abstract. In: Canty, S.M., E. Walton, A. Clark., D. Ellis. J. Mundell, and D.A. Van Sanford (Eds.), Proceedings of the National Fusarium Head Blight Forum; 2008 Dec 2-4; Indianapolis, IN. Lexington, KY: University of Kentucky. pp.219
Chu, C., Friesen, T.L., Chao, S., Faris, J.D., Xu, S.S. 2008. The concurrence of Stagonospora nodorum blotch resistance with host-selective toxin insensitivity in tetraploid wheat. National Wheat Genomics Conference. p. 9 (NWGC), December 4-6, 2008, Indianapolis, IN
Tsilo, T., Chao, S., Jin, Y., Anderson, J. 2009. Identification and validation of SSR markers linked to the stem rust resistance gene Sr6 on the short arm of chromosome 2D in wheat. Theoretical and Applied Genetics. 118:515-524
Liu, S., Chao, S., Anderson, J.A. 2008. New DNA Markers for High Molecular Weight Glutenin Subunits in Wheat. Theoretical and Applied Genetics. 118:177-183
Zhang, W., Chao, S., Manthey, F., Chicaiza, O., Brevis, J.C., Echenique, J., Dubcovsky, J. 2008. Qtl analysis of pasta quality using a composite microsatellite - snp map of durum wheat. Theoretical and Applied Genetics. 117:1361-1377
Abu, Q.M., Liu, Z., Faris, J.D., Chao, S., Edwards, M.C., Lai, Z., Franckowiak, J.D., Friesen, T.L. 2008. A region of barley chromosome 6H harbors multiple major genes associated with net type blotch resistance. Theoretical and Applied Genetics. 117:1261-1270
Xu, S.S., D.L. Klindworth, G.A. Hareland, E.M. Elias, J.D. Faris, and S. Chao. 2008. Chromosome location and characterization of genes for grain protein content in Triticum dicoccoides. In: R. Appels, R. Eastwood, E. Lagudah, P. Langridge, M. Mackay, L. McIntye, and P. Sharp (Eds.) Proc. 11th Int. Wheat Genet. Symp., vol. 2. Sydney University Press, Sydney, Australia. Pp 572-574.
Chao, S., Zhang, W., Akhunov, E., Sherman, J., Ma, Y., Luo, M., Dubcovsky, J. 2008. Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.). Molecular Breeding. 23:23-33
Reedy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2008. Genomic analysis of the Snn1 locus on wheat chromosome arm 1BS and the identification of candidate genes. The Plant Genome. 1:55-66
Bonman, J.M., Gu, Y., Coleman Derr, D., Jackson, E.W., Chao, S., Bockelman, H.E. 2008. Origin of barley accessions with multiple disease resistance determined by SSR analysis.. International Congress of Plant Pathology Abstracts and Proceedings.
Chao, S., Zhang, W., Akhunov, E., Sherman, J., Ma, Y., Luo, M., Dvorak, J., Dubcovsky, J. Analysis of gene-derived SNP marker polymorphism in wheat (Triticum aestivum L.). Plant and Animal Genome Conference. p. 157
Anderson, J.A., Chao, S., Liu, S. 2008. Molecular Breeding Using a Major QTL for Fusarium Head Blight Resistance in Wheat. Crop Science. 47(3):S112-S119
Chao, S., Zhang, W., Dubcovsky, J., Sorrells, M. 2007. Evaluation of genetic diversity and genome-wide linkage disequilibrium amoung U.S. wheat (Triticum aetivum L.) germplasm representing different market classes. Crop Science. 47:1018-1030.
Chao, S., Zhang, W., Dubcovsky, J., Sorrells, M. 2007. Evaluation of genetic diversity and genome-wide linkage disequilibrium among US wheat (Triticum aestivum L.) germplasm representing different market classes. Plant and Animal Genome VX Conference Abstracts. p. 168.
Reddy, L., Friesen, T.L., Meinhardt, S.W., Chao, S., Faris, J.D. 2007. Genomic analysis of the Snn1 locus on the short arm of chromosome 1B in wheat. Plant and Animal Genome VX Conference Abstracts. p. 176.
Chao, S., Anderson, J.A., Glover, K., Smith, K. 2006. Use of high throughput marker technologies for marker-assisted breeding in wheat and barley [abstract]. Plant and Animal Genome XIV Conference. Abstract No. W43:17.
Zhang, W., Echenique, V., Manthey, F., Helguera, M., Chao, S., Dubcovsky, J. 2006. QTLs for semolina and pasta color in durum wheat [abstract]. Plant and Animal Genome XIV Conference. Abstract No. P321:181.
Brady, L.M., Anderson, J., Smith, K., Chao, S. 2005. A cost-effective high throughput genotyping methods, page 18. National Fusarium Head Blight Forum Proceedings, Dec 11-13, 2005, Milwaukee, WI.
Akhunov, E.D., Akhunov, A.R., Linkiewicz, A.M., Dubcovsky, J., Hummel, D., Lazo, G.R., Chao, S., Anderson, O.D., David, J., Qi, L., Echalier, B., Gill, B.S., Miftahudin, Gustafson, J.P., La Rota, M., Sorrells, M.E., Zhang, D., Nguyen, H.T., Kalavacharla, V., Hossain, K., Kianian, S.F., Peng, J., Lapitan, N.V., Wennerlind, E.J., Nduati, V., Anderson, J.A., Sidhu, D., Gill, K.S., Mcguire, P.E., Qualset, C.O., Dvorak, J. 2003. Synteny perturbations between wheat homoeologous chromosomes caused by locus duplications and deletions correlate with recombination rates along chromosome arms. Proceedings of the National Academy of Sciences. 100:10836-10841.
Anderson, O., Carollo, V., Chao, S., Laudencia-Chingcuanco, D., Lazo, G. 2004. The Use of ESTs to Analyze the Spectrum of Wheat Seed Proteins. Proceedings-8th Gluten Workshop. p. 18-21.