Projects

AN INTEGRATED DATABASE AND BIOINFORMATICS RESOURCE FOR SMALL GRAINS Appropriated (D)   Accession Number: 413153

Publications (Clicking on the reprint icon will take you to the publication reprint.)

The hordeum toolbox - the barley CAP genotype and phenotype resource - (Peer Reviewed Journal)

Blake, V.C., Kling, J.G., Hayes, P.M., Jannink, J., Jillella, S.R., Lee, J., Matthews, D.E., Chao, S., Close, T.J., Muehlbauer, G.J., Smith, K.P., Wise, R.P., Dickerson, J.A. 2012. The hordeum toolbox - the barley CAP genotype and phenotype resource. The Plant Genome. DOI: 10.385/plantgenome2012.03.0002.

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes - (Peer Reviewed Journal)

Akhunov, E.D., Akhunova, A., Anderson, O.D., Anderson, J., Blake, N., Clegg, M., Coleman-Derr, D., Conley, E., Crossman, C., Deal, K., Dubcovsky, J., Gill, B., Gu, Y.Q., Hadam, J., Heo, H., Huo, N., Lazo, G.R., Luo, M., Ma, Y., Matthews, D.E., Mcguire, P., Morrell, P., Qualset, C., Renfro, J., Tabanao, D., Talbert, L., Tian, C., Toleno, D., Warburton, M., You, F., Zhang, W., Dvorak, J. 2010. Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. Biomed Central (BMC) Genomics. 11:702-710.

The WheatCAP Project: Creating Public Long-Term Tools And Capabilities For Wheat Improvement - (Abstract Only)

Soria, M.A., Sherman, J., Anderson, J.A., Baenziger, P., Bai, G., Berzonsky, B., Brown Guedira, G.L., Campbell, K.J., Carver, B.F., Chao, S., Fritz, A., Griffey, C., Haley, S.D., Johnson, J.W., Kianian, S.F., Kidwell, K., Matthews, D.E., Mergoum, M., Ohm, H., Peterson, J., Lizrazu, O., Rudd, J., Talbert, L., Sorrells, M.E., Souza, E.J., Yan, L., Zemetra, R. 2010. The WheatCAP Project: Creating Public Long-Term Tools And Capabilities For Wheat Improvement. Meeting Abstract.

Development and Implementation of High-Throughput SNP Genotyping in Barley - (Peer Reviewed Journal)

Close, T.J., Bhat, P., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., Druka, A., Stein, N., Svensson, J., Wanamaker, S., Bozdag, S., Roose, M., Moscou, M., Chao, S., Varshney, R., Szucs, P., Sato, K., Hayes, P., Matthews, D.E., Kleinhofs, A., Muehlbauer, G., Deyoung, J., Marshall, D.F., Madishetty, K., Fenton, R.D., Condamine, P., Graner, A., Waugh, R. 2009. Development and Implementation of High-Throughput SNP Genotyping in Barley. Biomed Central (BMC) Genomics. 10:582.

Genome Comparisons Reveal a Dominant Mechanism of Chromosome Number Reduction in Grasses and Accelerated Genome Evolution in Triticeae - (Peer Reviewed Journal)

Luo, M.C., Deal, K.R., Akhunov, E.D., Akhunova, A.R., Anderson, O.D., Anderson, J.A., Blake, N., Clegg, M.T., Coleman-Derr, D., Conley, E.E., Crossman, C.C., Dubcovsky, J., Gill, B.S., Gu, Y.Q., Hadam, J., Heo, H., Huo, N., Lazo, G.R., Lundy, K.E., Ma, Y., Matthews, D.E., Mcguire, P.E., Morrell, P.L., Nicolet, C.M., Qualset, C.O., Renfro, J., Tabano, D., Talbert, L.E., Tian, A., Toleno, D.M., Warburton, M.L., You, F.M., Zhang, W.J., Dvorak, J. 2009. Genome Comparisons Reveal a Dominant Mechanism of Chromosome Number Reduction in Grasses and Accelerated Genome Evolution in Triticeae. Proceedings of the National Academy of Sciences. 106:15780-15785.

Plant and Crop Databases - (Book / Chapter)

Matthews, D.E., Lazo, G.R., Anderson, O.D. 2009. Plant and Crop Databases. In: Somers, D.J., Langridge, P., and Gustafson, J.P., editors. Plant Genomics: Methods and Protocols. New York, NY: Humana Press. P. 243-262.

STRUCTURAL AND FUNCTIONAL ANALYSES OF THE WHEAT GENOMES BASED ON EXPRESSED SEQUENCE TAGS (ESTS) RELATED TO ABIOTIC STRESSES - (Peer Reviewed Journal)

Ramalingam, J., Pathan, M.S., Feril, O., Miftahudin, Ross, K., Ma, X., Mahmoud, A.A., Layton, J., Rodriguez-Milla, M.A., Chikmawati, T., Valliyodan, B., Skinner, R., Matthews, D.E., Gustafson, J.P., Nguyen, H.T. 2006. Structural and functional analyses of the wheat genomes based on expressed sequence tags (ests) related to abiotic stresses. Genome. 49:1324-1340.

GRAIN GENES 2.0 - AN IMPROVED RESOURCE FOR THE SMALL-GRAINS COMMUNITY - (Peer Reviewed Journal)

Carollo, V.L., Matthews, D.E., Lazo, G.R., Blake, T.K., Hummel, D., Lui, N., Hane, D.L., Anderson, O.D. 2005. Grain genes 2.0 - an improved resource for the small-grains community. Plant Physiology. 139:643-651.

GRAIN GENES 2.0: RESOURCES FOR SMALL GRAINS BREEDING - (Proceedings)

Matthews, D.E., Carollo, V.L., Lazo, G.R., Anderson, O.D. 2005. Grain Genes 2.0: Resources for Small Grains Breeding. Eastern Wheat Workers and Southern Small Grains Workers Conference Proceedings. 1:31-33.

GROUP 3 CHROMOSOME BIN MAPS OF WHEAT AND THEIR RELATIONSHIP TO RICE CHROMOSOME 1 - (Peer Reviewed Journal)

Munkvold, J.D., Greene, R.A., Bermudez-Kandianis, C.E., La Rota, C.M., Edwards, H., Sorrells, S.F., Dake, T., Benscher, D., Kantety, R., Linkiewicz, A.M., Dubcovsky, J., Akhunov, E.D., Dvorak, J., Miftahudin, Gustafson, J.P., Pathan, M.S., Nguyen, H.T., Matthews, D.E., Chao, S., Lazo, G.R., Hummel, D., Anderson, O.D., Anderson, J.A., Gonzalez-Hernandez, J.L., Peng, J., Lapitan, N.V., Qi, L.L., Echalier, B., Gill, B.S., Hossain, K.S., Kalavacharla, V., Kianian, S.F., Sandhu, D., Eryman, M., Gill, K.S., Mcguire, P.E., Qualset, C.O., Sorrells, M.E. 2004. Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics. 168:639-650.

BIOINFORMATICS AND TRITICEAE GENOMICS: RESOURCES AND FUTURE DEVELOPMENTS - (Book / Chapter)

Matthews, D.E., Lazo, G.R., Carollo, V.L., Anderson, O.D. 2004. Bioinformatics and Triticeae Genomics: Resources and Future Developments. In: Gupta, P.K. and Varshney, R.K. (Eds.) Cereal Genomics. Kluwer Academic Publishers, Dordrecht. p. 425-446.

A GRAPH-THEORETIC APPROACH TO COMPARING AND INTEGRATING GENETIC, PHYSICAL AND SEQUENCE-BASED MAPS - (Peer Reviewed Journal)

YAP, I.V., SCHNEIDER, D.J., KLEINBERG, J., MATTHEWS, D.E., CARTINHOUR, S.W., MCCOUCH, S.R. A GRAPH-THEORETIC APPROACH TO COMPARING AND INTEGRATING GENETIC, PHYSICAL AND SEQUENCE-BASED MAPS. GENETICS. 2003. V. 165. P. 2235-2247.

DATA MINING FOR SIMPLE SEQUENCE REPEATS IN EXPRESSED SEQUENCE TAGS FROM BARLEY, MAIZE, SORGHUM AND WHEAT - (Peer Reviewed Journal) - (05-Sep-02)