Projects

Functional and Structural Genetic Analysis of Soybean and Other Legumes Appropriated (D)   Accession Number: 413378

High Throughput Sequencing for Asian Soybean Rust and Phytophthora Specific Cooperative Agreement (S)   Accession Number: 413367

Publications

Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response - (Peer Reviewed Journal)

O'Rourke, J.A., Nelson, R., Grant, D.M., Schmutz, J., Grimwald, J., Cannon, S.B., Vance, C.P., Graham, M.A., Shoemaker, R.C. 2009. Integrating Microarray Analysis and the Soybean Genome to Understand the Soybean's Iron Deficiency Response. Biomed Central(BMC)Genomics. 10:376. Available: http://www.biomedcentral.com/1471-2164/10/376.

Retrotransposons in the intergenic regions of syntenic blocks between soybean and Medicago truncatula and their contribution to local genome evolution - (Peer Reviewed Journal) - (27-May-09)

Identification and Analyses of Candidate Genes for Rpp4 Mediated Resistance to Asian Soybean Rust in Soybean (Glycine max) - (Peer Reviewed Journal)

Meyer, J.D., Silva, D.C., Yang, C., Van De Mortel, M., Pedley, K.F., Hill, J.H., Shoemaker, R.C., Abdelnoor, R., Whitham, S.A., Graham, M.A. 2009. Identification and Analyses of Candidate Genes for Rpp4 Mediated Resistance to Asian Soybean Rust in Soybean (Glycine max). Plant Physiology. 150:295-307.

Genomic Studies in Soybean: Toward Understanding Seed Oil and Protein Production - (Abstract)

Bolon, Y.E., Joseph, B., Cannon, S.B., Diers, B., Farmer, A., Graham, M.A., May, G., Muehlbauer, G., Specht, J., Tu, Z., Weeks, N., Xu, W., Shoemaker, R.C., Vance, C.P. 2008. Genomic Studies in Soybean: Toward Understanding Seed Oil and Protein Production [abstract]. IV International Conference on Legume Genomics and Genetics, December 7-12, 2008, Puerto Vallarta, Mexico. Abstract No. W28. p. 101 and Abstract No. P57, p. 63.

Targeted Sequencing of the Rpp2 Asian Soybean Rust Resistance Locus - (Abstract) - (20-Jul-08)

Identification of Candidate Genes for the Rpp4 Asian Soybean Rust Resistance Locus in Soybean - (Abstract) - (20-Jul-08)

Targeted Sequencing and Analyses of the Rpp4 Asian Soybean Rust Resistance Locus in Soybean - (Abstract) - (20-Jul-08)

Dissecting the molecular response of soybean to Asian soybean rust - (Abstract) - (01-Jun-08)

Sequence Level Analysis of Recently Duplicated Regions in the Soybean [Glycine max (L.) Merr.] Genome - (Peer Reviewed Journal)

Van, K., Kim, D., Mei Cai, C., Young Kim, M., Shin, J., Graham, M.A., Shoemaker, R.C., Choi, B., Yang, T., Lee, S. 2008. Sequence Level Analysis of Recently Duplicated Regions in the Soybean [Glycine max (L.) Merr.] Genome. DNA Research. 15:93-102.

Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines - (Peer Reviewed Journal)

O'Rourke, J.A., Charlson, D.V., Gonzalez, D.O., Vodkin, L.O., Graham, M.A., Cianzio, S.R., Grusak, M.A., Shoemaker, R.C. 2007. Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines. Biomed Central (BMC) Genomics. 8:476.

Defensin-Like Genes: Genomic Perspectives on a Diverse Superfamily in Plants - (Peer Reviewed Journal)

Graham, M.A., Silverstein, K.A., Vandenbosch, K.A. 2008. Defensin-like genes: genomic perspectives on a diverse superfamily in plants. The Plant Genome/Crop Science. 48:S3-S11.

Gene expression profiling of soybean near-isogenic lines contrasting in seed protein and oil - (Abstract)

Bolon, Y.E., Diers, B., Graham, M.A., Muehlbauer, G., Shoemaker, R.C., Specht, J., Vance, C.P. 2008. Gene expression profiling of soybean near-isogenic lines contrasting in seed protein and oil [abstract]. XVI Plant and Animal Genome Conference Proceedings, January 12-16, 2008, San Diego, California. Abstract W481.

Bioinformatic Resources for Soybean Genetic and Genomic Research - (Book/Chapter)

Grant, D.M., Nelson, R., Graham, M.A., Shoemaker, R.C. 2008. Bioinformatic resources for soybean genetic and genomic research. In: Stacey, Gary, editor. Genetics and Genomics of Soybean. New York, New York. Springer. p. 141-162.

Biphasic Responses of Resistant and Susceptible Soybean Plants to Soybean Rust, Phakopsora Pachyrhizi - (Peer Reviewed Journal)

Van De Mortel, M., Recknor, J.C., Graham, M.A., Nettleton, D., Dittman, J., Nelson, R., Godoy, C.V., Abdelnoor, R.V., Almeida, A.M., Baum, T.J., Whitham, S.A. 2007. Biphasic responses of resistant and susceptible soybean plants to soybean rust, Phakopsora pachyrhizi. Molecular Plant-Microbe Interactions. 20:887-899.

Phosphorus stress in common bean: root transcript and metabolic responses - (Peer Reviewed Journal)

Hernandez, G., Ramirez, M., Valdes-Lopez, O., Gebeyaw, M.T., Graham, M.A., Czechowski, T., Schlereth, A., Wandrey, M., Erban, A., Cheung, F., Wu, H., Lara, M., Town, C.D., Kopka, J., Udvardi, M.K., Vance, C.P. 2007. Phosphorus stress in common bean: root transcript and metabolic responses. Plant Physiology. 144:752-767.

Small Cysteine-Rich Peptides Resembling Antimicrobial Peptides Have Been under-Predicted in Plants - (Peer Reviewed Journal)

Silverstein, K.A., Moskal, Jr, W.A., Wu, H.C., Underwood, B.A., Graham, M.A., Town, C.D., Vandenbosch, K.A. 2007. Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants. Plant Journal. 51:262-280.

Recent advances in legume-microbe interactions: recognition, defense response and symbiosis from a genomic perspective - (Peer Reviewed Journal)

Samac, D.A., Graham, M.A. 2007. Recent advances in legume-microbe interactions: recognition, defense response, and symbiosis from a genomic perspective. Plant Physiology. 144:582-587.

Recovering from Iron Deficiency Chlorosis in Near Isogenic Soybeans: a Microarray Study - (Peer Reviewed Journal)

O'Rourke, J., Graham, M.A., Vodkin, L., Gonzalez, D., Cianzio, S., Shoemaker, R.C. 2007. Recovering from iron deficiency chlorosis in near isogenic soybeans: a microarray study. Plant Physiology and Biochemistry. 45:287-292.

Recovering from Iron Deficiency Chlorosis in Near Isogenic Soybeans: a Microarray Study - (Abstract)

O'Rourke, J.A., Graham, M.A., Cianzio, S.R., Shoemaker, R.C. 2007. Recovering from iron deficiency chlorosis in near isogenic soybeans: a microarray study [abstract]. Iron Nutrition and Interactions in Plants Symposium. Paper No. S6-P-21.

Identification of Candidate Phosphorus Stress Induced Genes in Phaseolus Vulgaris L. Through Clustering Analysis Across Several Plant Species - (Peer Reviewed Journal)

Graham, M.A., Ramirez, M., Valdes-Lopez, O., Lara, M., Tesfaye, M., Vance, C.P., Hernandez, G. 2006. Identification of candidate phosphorus stress induced genes in Phaseolus vulgaris L. through clustering analysis across several plant species. Functional Plant Biology. 33(8):789-797.