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United States Department of Agriculture

Agricultural Research Service

Related Topics

Mary L Schaeffer
Plant Genetics Research
Geneticist Plants

Phone: (573) 884-7873
Fax: (573) 884-7850
Room 203
CURTIS HALL
UNIVERSITY OF MISSOURI
COLUMBIA, MO, 65211-7020

Projects
Genetics and Genomics of Complex Traits in Grain Crops
Appropriated (D)
  Accession Number: 424655

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Bc4go: a Full-Text Corpus for the Biocreative IV Go Task Reprint Icon - (Peer Reviewed Journal)
Van Auken, K., Schaeffer, M.L., McQuilton, P., Laulederkind, S.J., Li, D., Wang, S., Hayman, G., Tweedie, S., Arighi, C.N., Done, J., et al. 2014. BC4GO: a full-text corpus for the BioCreative IV GO Task. Database: The Journal of Biological Databases and Curation. 2014:1-9. Available: http://database.oxfordjournals.org/content/2014/bau074
Maize databases - (Book / Chapter)
Schaeffer, M.L., Sen, T.Z., Lawrence, C.J. 2014. Maize databases. In: Wusirika, R., Bohn, M., Lai, J., Kole, C., editors. Genetics, Genomics and Breeding of Maize. Boca Raton, FL: CRC Press. p. 215-235.
MaizeGDB: everything old is new again! [abstract] Reprint Icon - (Abstract Only)
Andorf, C.M., Cannon, E., Portwood, J., Braun, B.L., Harper, E.C., Campbell, D.A., Schaeffer, M.L., Richter, J., Sen, T.Z., Lawrence, C.J. 2013. MaizeGDB: everything old is new again! [abstract]. In: Maize Genetics Conference, St. Charles, IL. Mar. 14-17, 2013. p. 55.
Metabolic pathway resources at MaizeGDB - (Abstract Only)
Sen, T.Z., Monaco, M., Chae, L., Dharmawardhana, P., Schaeffer, M.L., Dreher, K., Zhang, P., Naithani, S., Thomason, J., Harper, E.C., Gardiner, J., Cannon, E., Andorf, C.M., Campbell, D.A., Rhee, S.Y., Ware, D., Jaiswal, P., Lawrence, C.J. 2013. Metabolic pathway resources at MaizeGDB [abstract]. In: Proceedings of Maize Genetics Conference, March 14-17, St. Charles, Illinois. p. 3.
Maize metabolic network construction and transcriptome analysis - (Peer Reviewed Journal)
Monaco, M.K., Sen, T.Z., Dharmawardhana, P., Ren, L., Schaeffer, M.L., Amarasinghe, V., Thomason, J., Harper, E.C., Gardiner, J.M., Lawrence, C.J., Ware, D., Jaiswal, P., Naithani, S., Cannon, E. 2013. Maize metabolic network construction and transcriptome analysis. The Plant Genome. 6(1):DOI:10.3835/plantgenome2012.09.0025.
An overview of the biocreative 2012 workshop track III: Interactive text mining task Reprint Icon - (Peer Reviewed Journal)
Arighi, C.N., Carterette, B., Krallinger, M., Wilbur, J.W., Fey, P., Dodson, R., Cooper, L., Van Slyke, C.E., Dahdul, W., Mabee, P., Schaeffer, M.L., et al 2013. An overview of the biocreative 2012 workshop track III: Interactive text mining task. Database: The Journal of Biological Databases and Curation. 2012:1-18. Available: http://database.oxfordjournals.org/content/2013/bas056.full.
The plant ontology as a tool for comparative plant anatomy and genomic analyses Reprint Icon - (Peer Reviewed Journal)
Cooper, L., Walls, R.L., Elser, J., Gandolfo, M.A., Stevenson, D.W., Smith, B., Preece, J., Athreya, B., Mungall, C.J., Rensing, S., Hiss, M., Lang, D., Reski, R., Berardini, T.Z., Li, D., Huala, E., Schaeffer, M.L., Menda, N., Arnaud, E., Shrestha, R., Yamazaki, Y., Jaiswal, P. 2013. The plant ontology as a tool for comparative plant anatomy and genomic analyses. Plant Cell Physiology. 54(2):1-23.
MaizeGDB: enabling access to basic, translational, and applied research information - (Proceedings)
Lawrence, C.J., Andorf, C.M., Birkett, S., Braun, B.L., Campbell, D.A., Cannon, E., Gardiner, J., Harper, E.C., Portwood, J., Richter, J., Schaeffer, M.L., Sen, T.Z., Wimalanathan, K. 2012. MaizeGDB: enabling access to basic, translational, and applied research information. Meeting Proceedings. P. 233.
Plant databases and data analysis tools - (Book / Chapter) - (16-Apr-12)
POPcorn: An online resource providing access to distributed and diverse maize project data Reprint Icon - (Peer Reviewed Journal)
Cannon, E.K., Birkett, S.M., Braun, B.L., Kodavali, S., Jennewein, D.M., Yilmaz, A., Antonescu, V., Antonescu, C., Harper, E.C., Gardiner, J.M., Schaeffer, M.L., Campbell, D.A., Andorf, C.M., Andorf, D., Lisch, D., Koch, K.K., McCarty, D.R., Quackenbush, J., Grotewold, E., Lushbough, C.M., Sen, T.Z., Lawrence, C.J. 2011. POPcorn: An online resource providing access to distributed and diverse maize project data. International Journal of Plant Genomics. 2011:Article 923035. Available http://www.hindawi.com/journals/ijpg/2011/923035.
MaizeCyc: Metabolic networks in maize - (Abstract Only)
Monaco, M., Sen, T.Z., Ren, L., Dharmawardhana, P., Schaeffer, M.L., Amarasinghe, V., Thomason, J., Harper, E.C., Naithani, S., Gardiner, J.M., Lawrence, C.J., Ware, D., Pankaj, J. 2012. MaizeCyc: Metabolic networks in maize. Plant and Animal Genome Conference. 4:100-110.
MaizeGDB, the maize model organism database - (Abstract Only)
Lawrence, C.J., Andorf, D., Andorf, C.M., Birkett, S.M., Braun, B.L., Cannon, E., Campbell, D.A., Gardiner, J.M., Harper, E.C., Rao, B., Schaeffer, M.L., Sen, T.Z. 2011. MaizeGDB, the maize model organism database. Meeting Abstract. P. 1.
Metabolic and regulatory networks in gramene - (Abstract Only)
Dharmawardhana, P., Monaco, M., Amarasinghe, V., Preece, J., Wu, G., D'Eustachio, P., Thomason, J., Sen, T.Z., Gardiner, J.M., Harper, E.C., Schaeffer, M.L., Lawrence, C.J., Ware, D., Jaiswal, P. 2011. Metabolic and regulatory networks in gramene. Meeting Abstract. Paper No. 2.
MaizeCyc: Metabolic networks in maize - (Abstract Only)
Monaco, M., Sen, T.Z., Ren, L., Dharmawardhana, P., Schaeffer, M.L., Amarasinghe, V., Thomason, J., Harper, E.C., Naithani, S., Gardiner, J.M., Lawrence, C.J., Ware, D., Jaiswal, P. 2011. MaizeCyc: Metabolic networks in maize [abstract]. In: Conference on Genome Informatics, November 2-5, 2011, Cold Spring Harbor, New York. p. 1.
Computable visually observed phenotype ontological framework for plants - (Peer Reviewed Journal)
Harnsomburana, J., Green, J., Barb, A., Schaeffer, M.L., Vincent, L., Shyu, C. 2011. Computable visually observed phenotype ontological framework for plants. BMC Bioinformatics. 12:260. Available: http://www.biomedcentral.com/1471-2105/12/260.
Metabolic and regulatory networks for cereals - (Abstract Only)
Dharmawardhana, P., Monaco, M., Amarasinghe, V., Preece, J., D'Eustachio, P., Ren, L., Thomason, J., Sen, T.Z., Gardiner, J.M., Harper, E.C., Schaeffer, M.L., Lawrence, C.J., Ware, D., Jaiswal, P. 2011. Metabolic and regulatory networks for cereals. American Society of Plant Biologists Annual Meeting, August 6-10, 2011, Minneapolis, MN. Available: http://abstracts.aspb.org/pb2011/public/P21/P21021.html.
MaizeGDB: Curation and outreach go hand-in-hand - (Peer Reviewed Journal)
Schaeffer, M.L., Harper, E.C., Gardiner, J.M., Andorf, C.M., Campbell, D.A., Cannon, E.K., Sen, T.Z., Lawrence, C.J. 2011. MaizeGDB: Curation and outreach go hand-in-hand. Database: The Journal of Biological Databases and Curation. 2011:Article bar022. Available: http://database.oxfordjournals.org/content/2011/bar022.long.
The MaizeGDB Genome Browser Tutorial: One example of database outreach to biologists via video - (Peer Reviewed Journal)
Harper, E.C., Schaeffer, M.L., Thistle, J., Gardiner, J., Andorf, C.M., Campbell, D.A., Cannon, E.K., Braun, B.L., Birkett, S., Lawrence, C.J., Sen, T.Z. 2011. The MaizeGDB Genome Browser Tutorial: One example of database outreach to biologists via video. Database: The Journal of Biological Databases and Curation. DOI: 10.1093/database/bar016:1.
Multi-source and ontology-based retrieval engine for maize mutant phenotypes - (Peer Reviewed Journal)
Green, J.M., Harnsomburana, J., Schaeffer, M.L., Lawrence, C.J., Shyu, C. 2011. Multi-source and ontology-based retrieval engine for maize mutant phenotypes. Database: The Journal of Biological Databases and Curation. 2011:Article ID bar012. Available: http://database.oxfordjournals.org/content/2011/bar012.
Reinventing MaizeGDB - (Abstract Only)
Andorf, C.M., Cannon, E.K., Braun, B.L., Birkett, S., Harper, E.C., Schaeffer, M.L., Gardiner, J., Jayasingam, D., Campbell, D.A., Sen, T.Z., Lawrence, C.J. 2011. Reinventing MaizeGDB. 53rd Annual Maize Genetics Conference Program and Abstracts. 1(1):33.
MAIZEGDB.ORG, the Maize Genetics Cooperation and the 2500 Mb B73 Genome-Generated Tsunami - (Abstract Only) - (11-Oct-10)
Choosing a Genome Browser for a Model Organism Database (MOD): Surveying the Maize Community - (Peer Reviewed Journal)
Sen, T.Z., Harper, E.C., Schaeffer, M.L., Andorf, C.M., Seigfried, T.E., Campbell, D.A., Lawrence, C.J. 2010. Choosing a Genome Browser for a Model Organism Database (MOD): Surveying the Maize Community. Database: The Journal of Biological Databases and Curation. doi: 10.1093/database/baq007. p. 1.
Sequence Resources at MaizeGDB with Emphasis on POPcorn: A Project Portal for Corn - (Proceedings)
Lawrence, C.J., Cannon, E.K., Andorf, C.M., Campbell, D.A., Harper, E.C., Schaeffer, M.L., Sen, T.Z. 2010. Sequence Resources at MaizeGDB with Emphasis on POPcorn: A Project Portal for Corn [abstract]. 52nd Maize Genetics Conference Proceedings. p. 32.
The Physical and Genetic Framework of the B73 Maize Genome - (Peer Reviewed Journal)
Wei, F., Zhang, J., Zhou, S., He, R., Schaeffer, M.L., Collura, K., Kudrna, D., Faga, B., Wissotski, M., Golser, W., Fulton, L., Courtney, W., Fronick, C., Fulton, B., Coe, E., Schwartz, D.C., Ware, D., Clifton, S., Wilson, R.K., Wing, R.A. 2009. The Physical and Genetic Framework of the B73 Maize Genome. PLoS Genetics. 5(11):e1000715.
The Locus Lookup Tool at MaizeGDB: Identification of Genomic Regions in Maize by Integrating Sequence Information with Physical and Genetic Maps - (Peer Reviewed Journal)
Andorf, C.M., Lawrence, C.J., Harper, E.C., Schaeffer, M.L., Campbell, D.A., Sen, T.Z. 2010. The Locus Lookup Tool at MaizeGDB: Identification of Genomic Regions in Maize by Integrating Sequence Information with Physical and Genetic Maps. Bioinformatics. 26(3):434-436.
MaizeGDB Becomes Sequence-centric - (Peer Reviewed Journal)
Sen, T.Z., Andorf, C.M., Schaeffer, M.L., Harper, E.C., Sparks, M., Duvick, J., Brendel, V., Cannon, E., Campbell, D.A., Lawrence, C.J. 2009. MaizeGDB Becomes Sequence-centric. Database: The Journal of Biological Databases and Curation. doi: 10.1093/database/bap020. p. 1.
The MaizeGDB Genome Browser - (Abstract Only)
Sen, T.Z., Andorf, C.M., Campbell, D.A., Schaeffer, M.L., Harper, E.C., Lawrence, C.J. 2009. The MaizeGDB Genome Browser [abstract]. Maize Genetics Conference Abstracts. p. 28.
The MaizeGDB Genome Browser - (Abstract Only)
Sen, T.Z., Andorf, C.M., Campbell, D.A., Schaeffer, M.L., Harper, E.C., Lawrence, C.J. 2009. The MaizeGDB Genome Browser [abstract]. Plant and Animal Genome Conference Proceedings. p. 1.
Big Data: The Future of Biocuration - (Other)
Howe, D., Costanzo, M., Fey, P., Gojobori, T., Hannick, L., Hide, W., Hill, D.P., Kania, R., Schaeffer, M.L., St. Pierre, S., Twigger, S., White, O., Rhee, S.Y. 2008. Big Data: The Future of Biocuration. Nature. 455(7209):47-50.
Genome Browser Survey Results and Browser Selection for MaizeGDB - (Proceedings)
Sen, T.Z., Campbell, D.A., Schaeffer, M.L., Harper, E.C., Lawrence, C.J. 2008. Genome Browser Survey Results and Browser Selection for MaizeGDB. In: Genome Informatics Proceedings. Cold Spring Harbor Meeting Proceedings, Sept. 10-14, 2008, Hinxton, U.K. p. 1.
MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research - (Peer Reviewed Journal)
Lawrence, C.J., Harper, E.C., Schaeffer, M.L., Sen, T.Z., Seigfried, T.E., Campbell, D.A. 2008. MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research. International Journal of Plant Genomics. 2008:496957.
MaizeGDB as Chromosome Walking Companion - (Abstract Only)
Schaeffer, M.L., Campbell, D.A., Harper, E.C., Seigfried, T.E., Sen, T.Z., Lawrence, C.J. 2008. MaizeGDB as Chromosome Walking Companion. American Society of Plant Biologists Annual Meeting. p.106.
MaizeGDB's New Genome Browser Project - (Abstract Only)
Sen, T.Z., Seigfried, T.E., Campbell, D.A., Schaeffer, M.L., Harper, E.C., Lawrence, C.J. 2008. MaizeGDB's New Genome Browser Project. In: 50th Maize Genetics Conference Proceedings, February 27-March 2, 2008, Washington, D.C. p. 61.
Maize Genetics and Genomics Database - (Research Notes)
Schaeffer, M.L., Campbell, D.A., Seigfried, T.E., Harper, E.C., Sen, T.Z., Lawrence, C.J. 2008. Maize Genetics and Genomics Database. Maize Genetics Cooperation Newsletter. 82:82-83.
MaizeGDB Community Curation Tools - (Abstract Only)
Sen, T.Z., Campbell, D.A., Harper, E.C., Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E. 2008. MaizeGDB Community Curation Tools. In: Annual International Plant & Animal Genome XVI Conference Proceedings, January 12-16, 2008, San Diego, CA. p. 940.
The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations - (Peer Reviewed Journal)
Avraham, S., Tung, C., Jaiswal, P., Ilic, K., Kellogg, E., Mccouch, S., Pujar, A., Reiser, L., Rhee, S., Sachs, M.M., Schaeffer, M.L., Stein, L., Stevens, P., Vincent, L., Zapata, F., Ware, D. 2008. The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations. Nucleic Acids Research. 36:D449-D454.
The Plant Ontology Database: A Community Resource for Plant Structure and Developmental Stages Controlled Vocabulary and Annotations - (Peer Reviewed Journal)
Avraham, S., Tung, C., Jaiswal, P., Ilic, K., Kellogg, E.A., Mccouch, S.R., Pujar, A., Reiser, L., Rhee, S.Y., Sachs, M.M., Schaeffer, M.L., Stein, L.D., Stevens, P.F., Vincent, L.P., Zapata, F., Ware, D. 2007. The Plant Ontology Database: A Community Resource for Plant Structure and Developmental Stages Controlled Vocabulary and Annotations. Nucleic Acids Research 36: Database issue D449-D454
Searching and Mining Visually Observed Phenotypes of Maize Mutants - (Peer Reviewed Journal)
Shyu, C., Harnsomburana, J., Green, J., Barb, A.S., Kazic, T., Schaeffer, M.L., Coe, E.J. 2007. Searching and Mining Visually Observed Phenotypes of Maize Mutants. Journal of Bioinformatics and Computational Biology. 5(6):1193-1213.
Physical and Genetic Structure of the Maize Genome Reflects its Complex Evolutionary History - (Peer Reviewed Journal)
Wei, F., Coe Jr, E., Nelson, W., Engler, F., Bharti, A.K., Butler, E., Kim, H., Goicoechea, J., Lee, S., Fuks, G., Sanchez-Villeda, H., Schroeder, S., Fang, Z., Mcmullen, M.D., Davis, G., Bowers, J.E., Paterson, A.H., Schaeffer, M.L., Gardiner, J., Cone, K., Messing, J., Soderlund, C., Wing, R.A. 2007. Physical and Genetic Structure of the Maize Genome Reflects its Complex Evolutionary History. PLoS Genetics. 3(7):e123.
Plant Structure Ontology, Unified Vocabulary of Anatomy and Morphology of a Flowering Plant - (Peer Reviewed Journal)
Ilic, K., Kellogg, E., Jaiswal, P., Zapata, F., Stevens, P., Vincent, L., Avraham, S., Reiser, L., Pujar, A., Sachs, M.M., Whitman, N., Mccouch, S., Schaeffer, M.L., Ware, D., Stein, L., Rhee, S. 2007. Plant Structure Ontology, Unified Vocabulary of Anatomy and Morphology of a Flowering Plant. Plant Physiology. 143:587-599.
Maize Genetics and Genomics Database - (Other)
Schaeffer, M.L., Harper, E.C., Seigfried, T.E., Campbell, D.A., Lawrence, C.J. 2007. Maize Genetics and Genomics Database. Maize Genetics Cooperation Newsletter. 81:68-70.
Impage Analysis for Mapping Immeasurable Phenotypes in Maize Reprint Icon - (Peer Reviewed Journal)
Shyu, C., Green, J.M., Lun, D.P., Kazic, T., Schaeffer, M.L., Coe, E. 2007. Impage Analysis for Mapping Immeasurable Phenotypes in Maize. IEEE Signal Processing Magazine. 24(3):116-119.
Plant Structure Ontology. Unified Vocabulary of Anatomy and Morphology of a Flowering Plant Reprint Icon - (Peer Reviewed Journal)
Ilic, K., Kellogg, E.A., Jaiswal, P., Zapata, F., Stevens, P.F., Vincent, L.P., Avraham, S., Reiser, L., Pujar, A., Sachs, M.M., Whitman, N.T., Mccouch, S.R., Schaeffer, M.L., Ware, D., Stein, L.D., Rhee, S.Y. 2006. Plant Structure Ontology. Unified Vocabulary of Anatomy and Morphology of a Flowering Plant. Plant Physiology 143:587-599
MaizeGDB's New Data Types, Resources, and Activities - (Peer Reviewed Journal)
Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E., Campbell, D.A., Harper, L.C. 2007. MaizeGDB's New Data Types, Resources, and Activities. Nucleic Acids Research. 35:D895-D900.
MaizeGDB's new data types, resources, and activities - (Abstract Only)
Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E., Campbell, D.A., Harper, L.C. 2007. MaizeGDB's new data types, resources, and activities. Annual International Plant & Animal Genome Conference. XV:P941.
A Bac Pooling Strategy Combined with Pcr-Based Screening in a Large, Highly Repetitive Genome Enables Integration of the Maize Genetic and Physical Maps - (Peer Reviewed Journal)
Yim, Y., Moak, P., Sanchez-Velleda, H., Musket, T., Close, P., Klein, P., Mullet, J., Mcmullen, M.D., Fang, Z., Schaeffer, M.L., Gardiner, J.M., Coe Jr, E.H., Davis, G.L. 2007. A BAC pooling strategy combined with PCR-based screening in a large, highly repetitive genome enables integration of the maize genetic and physical maps. Biomed Central (BMC) Genomics. 8:47.
Whole-Plant Growth Stage Ontology for Angiosperms and Its Application in Plant Biology Reprint Icon - (Peer Reviewed Journal)
Pujar, A., Jaiswal, P., Kellogg, E., Ilic, K., Vincent, L., Avraham, S., Stevens, P., Zapata, F., Reiser, L., Rhee, S., Sachs, M.M., Schaeffer, M.L., Stein, L., Ware, D., McCouch, S. 2006. Whole-plant growth stage ontology for angiosperms and its application in plant biology. Plant Physiology. 142:414-428.
A Computational Approach for Characterizing Standardized Phenotypic Images for Maize - (Abstract Only)
Shyu, C., Green, J., Farmer, C., Kazic, T., Coe Jr, E.H., Schaeffer, M.L., Millard, M.J., Cyr, P.D., Gardner, C.A. 2006. A computational approach for characterizing standardized phenotypic images for maize [abstract]. 48th Annual Maize Genetics Conference. 48:56.
Qtl Data at Maizegdb: Curation and "then Some" - (Abstract Only)
Schaeffer, M.L., Baran, S.B., Lawrence, C.J. 2006. QTL data at maizeGDB: curation and "then some" [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 231.
Maizegdb Standard Operating Procedures - (Abstract Only)
Campbell, D.A., Seigfried, T.E., Schaeffer, M.L., Lawrence, C.J. 2006. MaizeGDB standard operating procedures [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 51.
Maizegdb: the Maize Community Genetics and Genomics Database - (Abstract Only)
Seigfried, T.E., Campbell, D.A., Schaeffer, M.L., Lawrence, C.J. 2006. MaizeGDB: The maize community genetics and genomics database [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 52.
Contribute Your Data to Maizegdb! - (Abstract Only)
Lawrence, C.J., Campbell, D.A., Seigfried, T.E., Schaeffer, M.L. 2006. Contribute your data to MaizeGDB! [abstract]. 48th Annual Maize Genetics Conference Program and Abstracts. p. 47.
Plant Ontology (Po): a Controlled Vocabulary of Plant Structures and Growth Stages - (Peer Reviewed Journal)
Jaiswal, P., Avraham, S., Ilic, K., Kellogg, E.A., Mccouch, S., Pujar, A., Reiser, L., Rhee, S.Y., Sachs, M.M., Schaeffer, M.L., Stein, L., Stevens, P., Vincent, L., Ware, D., Zapata, F. 2005. Plant ontology (po): a controlled vocabulary of plant structures and growth stages. Comparative and Functional Genomics. 6:388-397.
Ibm2 2005 Neighbors-45,000 Locus Resource for Maize - (Abstract Only)
Schaeffer, M.L., Sanchez-Villeda, H., Mcmullen, M.D., Coe Jr, E.H. 2006. Ibm2 2005 neighbors--45,000 locus resource for maize. XIV Plant and Animal Genome Conference. p. 372.
Consensus Quantitative Trait Maps in Maize: a Database Strategy - (Peer Reviewed Journal)
Schaeffer, M.L., Byrne, P.F., Coe Jr., E.H. 2006. Consensus quantitative trait maps in maize: a database strategy. Maydica. 51:357-367.
Maizegdb, the Maize Genetics and Genomics Database - (Abstract Only)
Lawrence, C.J., Schaeffer, M.L., Seigfried, T.E., Campbell, D.A. 2006. MaizeGDB, the maize genetics and genomics database [abstract]. Plant and Animal Genome XIV: Final Abstract Guide. C001.
A Framework of Complex Queries for Plant Phenotype Image Databases - (Abstract Only)
Shyu, C., Green, J., Farmer, C., Kazic, T., Coe, E.H., Schaeffer, M.L., Lawrence, C.J., Millard, M.J., Cyr, P.D., Gardner, C.A. 2006. A framework of complex queries for plant phenotype image databases [abstract]. Plant and Animal Genome XIV: Final Abstract Guide. p. 875.
Uncaging Mutants: Moving From Menageries to Menages - (Peer Reviewed Journal)
Coe, Jr, E.H., Schaeffer, M.L. 2006. Uncaging Mutants: Moving From Menageries to Menages. Maydica. 51(2):263-267.
Single Nucleotide Polymorphisms and Insertion-Deletions for Genetic Markers and Anchoring the Maize Fingerprint Contig Physical Map - (Peer Reviewed Journal)
Vroh, B., Mcmullen, M.D., Sanchez-Villeda, H., Schroeder, S., Gardiner, J., Soderlund, C., Wing, R., Fang, Z., Coe Jr, E.H. 2006. Single nucleotide polymorphisms and insertion-deletions for genetic markers and anchoring the maize fingerprint contig physical map. Crop Science. 46:12-21.
The Maize Genetics and Genomics Database: a Community Resource for Access to Diverse Maize Data - (Proceedings)
Lawrence, C.J., Seigfried, T.E., Schaeffer, M.L., Campbell, D.A., Brendel, V. 2005. The maize genetics and genomics database: a community resource for access to diverse maize data. In: ASA-CSSA-SSSA Proceedings. ASA-CSSA-SSSA International Annual Meetings, Nov. 6-10, 2005, Salt Lake City, UT. p. 2439.
Genetic, Physical, Maps, and Database Resources for Maize Reprint Icon - (Peer Reviewed Journal)
Coe, Jr, E.H., Schaeffer, M.L. 2005. Genetic, Physical, Maps, and Database Resources for Maize. Maydica. 50:285-303.
Cimde: a Community Ibm Genetic Mapping Service - (Abstract Only)
Schaeffer, M.L., Sanchez-Villeda, H., Haverman, S., Mcmullen, M.D., Davis, G., Cone, K., Coe, E. 2005. Cimde: a community ibm genetic mapping service [abstract]. 2005 Maize Genetics Conference. 47:112.
Integration of Genetic and Physical Data in 2,585 Contigs - (Abstract Only)
Coe Jr, E.H., Cone, K., Wei, F., Nelson, W., Goicoechea, J.L., Bergstrom, D., Engler, F., Lee, S., Butler, E., Kim, H., Schroeder, S., Fang, Z., Mcmullen, M.D., Bi, I., Davis, G., Sanchez-Villeda, H., Yim, Y., Havermann, S., Bowers, J., Paterson, A., Polacco, M.L., Gardiner, J., Soderlund, C., Wing, R.A. 2004. Integration of genetic and physical data in 2,585 contigs [abstract]. Maize Genetics Conference. 46:106-107.
Anchoring 9371 Maize Est Unigenes to the Bac Contig Map by Two-Dimensional Overgo Hybridization - (Peer Reviewed Journal)
Gardiner, J., Schroeder, S., Polacco, M.L., Sanchez-Villeda, H., Morgante, M., Tingey, S., Chou, H., Brinner, S., Wing, R., Coe Jr, E.H. 2004. Anchoring 9371 maize est unigenes to the bac contig map by two-dimensional overgo hybridization. Plant Physiology. 134:1317-1326.
Ibm Neighbors: Consensus Genetic Map for Physical Map Scaffolding - (Abstract Only)
Polacco, M.L., Sanchez-Villeda, H., Coe Jr, E.H. 2004. IBM neighbors: consensus genetic map for physical map scaffolding [abstract]. Plant and Animal Genome.
An Integrated Comprehensive Map of the Maize Genome - (Abstract Only)
Wei, F., Nelson, W., Goicoechea, J.L., Engler, F., Lee, S., Butler, E., Kim, H., Schroeder, S., Fang, Z., Mcmullen, M.D., Bi, I., Davis, G., Sanchez-Villeda, H., Yim, Y., Havermann, S., Bowers, J., Paterson, A., Polacco, M.L., Gardiner, J., Cone, K., Coe Jr, E.H., Soderlund, C., Wing, R.A. 2004. An integrated comprehensive map of the maize genome [abstract]. Plant and Animal Genome Conference. 12:75.
The Maize Genome: Ready to Tile and to Target for Research - (Abstract Only)
Coe Jr, E.H., Cone, K., Sanchez-Villeda, H., Polacco, M.L., Gardiner, J., Mcmullen, M.D., Davis, G., Wing, R., Soderlund, C., Paterson, A. 2004. The maize genome: ready to tile and to target for research [abstract]. Plant and Animal Genome. 12:76.
Zea Mays Ontology-a Database of International Terms - (Peer Reviewed Journal)
VINCENT, P.D., COE JR, E.H., POLACCO, M.L. ZEA MAYS ONTOLOGY-A DATABASE OF INTERNATIONAL TERMS. TRENDS IN PLANT SCIENCE. 2003. V. 8(11). P. 517-520.
Imap: a Database-Driven Utility to Integrate and Access the Genetic and Physical Maps of Maize - (Peer Reviewed Journal)
FANG, Z., CONE, K., SANCHEZ-VILLEDA, H., POLACCO, M.L., MCMULLEN, M.D., SCHROEDER, S., GARDINER, J., DAVIS, G., HAVERMANN, S., COE JR, E.H. IMAP: A DATABASE-DRIVEN UTILITY TO INTEGRATE AND ACCESS THE GENETIC AND PHYSICAL MAPS OF MAIZE. BIOINFORMATICS. 2003. V. 19(16). P. 2105-2117.
Imap: a Tool for the Integration of Genetic and Physical Maps - (Peer Reviewed Journal)
Fang, Z., Cone, K., Sanchez, H., Polacco, M.L., Mcmullen, M.D., Schroeder, S., Gardiner, J., Davis, G., Seth, A., Yim, Y. 2003. Imap: a tool for the integration of genetic and physical maps. Bioinformatics. 19(16):2105-2111.
Development of An Integrated Laboratory Information Management System for the Maize Mapping Project - (Peer Reviewed Journal)
SANCHEZ-VILLEDA, H., SCHROEDER, S., POLACCO, M.L., MCMULLEN, M.D., HAVERMANN, S., DAVIS, G., VROH, B.I., CONE, K., SHAROPOVA, N., YIM, Y., SCHULTZ, L., NGOZI, D., MUSKET, T., HOUCHINS, K.E., FANG, Z., GARDINER, J., COE JR, E.H. DEVELOPMENT OF AN INTEGRATED LABORATORY INFORMATION MANAGEMENT SYSTEM FOR THE MAIZE MAPPING PROJECT. BIOINFORMATICS. 2003. V. 19(16). P. 2022-2030.
Whither Biological Database Research? - (Peer Reviewed Journal)
KAZIC, T., COE JR, E.H., POLACCO, M.L., SHYU, C. WHITHER BIOLOGICAL DATABASE RESEARCH?. OMICS - A JOURNAL OF INTEGRATIVE BIOLOGY. 2003. v. 7. p. 61-65.
The Maize Genome: a Challenge Met - (Abstract Only)
COE JR, E.H., CONE, K., SANCHEZ-VILLEDA, H., SCHROEDER, S., FANG, Z., POLACCO, M.L., GARDINER, J., MCMULLEN, M.D., VROH BI, I., KIM, Y., WING, R., SODERLUND, C., BUTLER, E., GOICOECHEA, J., ENGLER, F., PATERSON, A., BOWERS, J.E. THE MAIZE GENOME: A CHALLENGE MET. INTERNATIONAL CONGRESS OF GENETICS PROCEEDINGS. 2003. Abstract. p. 234.
Bioinformatic Resources for Snp and Indel Discovery in the Maize Mapping Project - (Abstract Only)
VROH, B.I., SANCHEZ-VILLEDA, H., SCHROEDER, S., MCMULLEN, M.D., FANG, Z., POLACCO, M.L., GARDINER, J., DAVIS, G., CONE, K., COE JR, E.H. BIOINFORMATIC RESOURCES FOR SNP AND INDEL DISCOVERY IN THE MAIZE MAPPING PROJECT. PLANT AND ANIMAL GENOME ABSTRACTS. 2003. Abstract p. 183.
Single Nucleotide Polymorphisms and Indels for the Development of Integrated Physical and Genetic Maps of Maize - (Abstract Only)
VROH, B.I., MCMULLEN, M.D., SCHULTZ, L., DURU, N., SCHROEDER, S., SANCHEZ-VILLEDA, H., POLACCO, M.L., GARDINER, J., USECHE, L., COE JR, E.H. SINGLE NUCLEOTIDE POLYMORPHISMS AND INDELS FOR THE DEVELOPMENT OF INTEGRATED PHYSICAL AND GENETIC MAPS OF MAIZE. PLANT AND ANIMAL GENOME. 2003. Abstract p. 182.
Crop Genome Databases -- Critical Issues - (Abstract Only)
POLACCO, M.L., HANCOCK, D., COE JR, E.H., SCHROEDER, S., SANCHEZ-VILLEDA, H., FANG, Z. CROP GENOME DATABASES -- CRITICAL ISSUES. PLANT AND ANIMAL GENOME ABSTRACTS. 2003.
Maizedb: Overview, Data Access/mining - (Abstract Only)
Polacco, M.L., Chen, S., Fang, Z., Hancock, D., Sanchez-Villeda, H., Schroeder, S., Coe Jr, E.H. 2003. Maizedb: overview, data access/mining. Plant and Animal Genome Abstracts. V.10:278.
Cmap: the Comparative Genetic Map Viewer - (Peer Reviewed Journal)
FANG, Z., POLACCO, M.L., CHEN, S., SCHROEDER, S., HANCOCK, D., SANCHEZ-VILLEDA, H., COE JR, E.H. CMAP: THE COMPARATIVE GENETIC MAP VIEWER. BIOINFORMATICS. 2003. v. 19. p. 416-417.
Characterization of Three Maize Bac Libraries and Anchoring of the Physical Map to the Genetic Map Using High-Density Bac Filter Hybridization - (Review Article)
YIM, Y.S., DAVIS, G.Y., DURU, N., MUSKET, T., LINTON, E.W., MESSING, J.W., MCMULLEN, M.D., SODERLUND, C., POLACCO, M.L., GARDINER, J.M., COE JR, E.H. CHARACTERIZATION OF THREE MAIZE BAC LIBRARIES AND ANCHORING OF THE PHYSICAL MAP TO THE GENETIC MAP USING HIGH-DENSITY BAC FILTER HYBRIDIZATION. PLANT PHYSIOLOGY. 2002. v. 130. p. 1686-1696.
Genetic, Physical, and Informatics Resources for Maize: on the Road to An Integrated Map - (Peer Reviewed Journal)
CONE, K., MCMULLEN, M.D., BI, I.V., DAVIS, G.L., YIM, Y.S., GARDINER, J.M., POLACCO, M.L., SANCHEZ-VILLEDA, H., FANG, Z., SCHROEDER, S.G., HAVERMAN, S.A., BOWERS, J.E., PATERSON, A.H., SODERLUND, C.A., ENGLER, F.W., WING, R.A., COE JR, E.H. GENETIC, PHYSICAL, AND INFORMATICS RESOURCES FOR MAIZE: ON THE ROAD TO AN INTEGRATED MAP. PLANT PHYSIOLOGY. 2002. p. 1598-1605.
The Maize Mapping Project: Comprehensive Genetic, Physical and Database Resources for Maize - (Other)
Coe Jr, E.H., Cone, K., Davis, G., Gardiner, J., Mcmullen, M.D., Polacco, M.L., Sanchez-Villeda, H., Wing, R., Soderlund, C., Chen, M. 2002. The maize mapping project: comprehensive genetic, physical and database resources for maize. Maize Genetics Cooperation Newsletter. V.76:78-79.
Comparative Bioinformatic Analysis of Genetic Maps from Rice and Maize - (Abstract Only)
FANG, Z., POLACCO, M.L., COE JR, E.H. COMPARATIVE BIOINFORMATIC ANALYSIS OF GENETIC MAPS FROM RICE AND MAIZE. MAIZE GENETICS CONFERENCE ABSTRACTS. 2002. p. 38.
An Integrated Map for Maize - (Abstract Only)
GARDINER, J., CONE, K., MCMULLEN, M.D., POLACCO, M.L., DAVIS, G., SANCHEZ-VILLEDA, H., FANG, Z., SHARAPOVA, N., YIM, Y., COE JR, E.H. AN INTEGRATED MAP FOR MAIZE. MAIZE GENETICS CONFERENCE. 2002. ABSTRACT. P. 78.
Characterization and Physical Mapping of Maize Bac Libraries Using High Density Bac Filter Hybridization - (Abstract Only) - (14-Mar-02)
A High-Resolution Maize Map Based on a Randomly Intermated B73 X Mo17 Population - (Abstract Only)
DAVIS, G., MUSKET, T., MELIA-HANCOCK, S., SHAROPOVA, N., MCMULLEN, M.D., SANCHEZ-VILLEDA, H., POLACCO, M.L., HOUCHINS, K.E., CONE, K., COE JR, E.H. A HIGH-RESOLUTION MAIZE MAP BASED ON A RANDOMLY INTERMATED B73 X MO17 POPULATION. MAIZE GENETICS CONFERENCE. 2002. ABSTRACT. P. 76.
Single Nucleotide Polymorphism Discovery and Mapping in Maize - (Abstract Only)
I VROH, B., MCMULLEN, M.D., SCHROEDER, S., SANCHEZ-VILLEDA, H., HOUCHINS, K.E., FANG, Z., POLACCO, M.L., GARDINER, J., MORGANTE, M., COE JR, E.H. SINGLE NUCLEOTIDE POLYMORPHISM DISCOVERY AND MAPPING IN MAIZE. MAIZE GENETICS CONFERENCE. 2002. ABSTRACT. P. 83.
Ibm Maize Community Resources - (Abstract Only)
MUSKET, T., DAVIS, G., MELIA-HANCOCK, S., SHAROPOVA, N., HOUCHINS, K.E., MCMULLEN, M.D., CONE, K., POLACCO, M.L., SACHS, M., COE JR, E.H. IBM MAIZE COMMUNITY RESOURCES. MAIZE GENETICS CONFERENCE. 2002. ABSTRACT. P. 80.
Imap: the Integrated Genetic and Physical Map of Maize - (Abstract Only)
CONE, K., COE JR, E.H., GARDINER, J., MCMULLEN, M.D., FANG, Z., SCHROEDER, S., SANCHEZ-VILLEDA, H., POLACCO, M.L., DAVIS, G., YIM, Y. IMAP: THE INTEGRATED GENETIC AND PHYSICAL MAP OF MAIZE. MAIZE GENETICS CONFERENCE ABSTRACTS. 2002. p. 21.
Maizedb - a Functional Genomics Perspective - (Peer Reviewed Journal)
Polacco, M.L., Coe Jr, E.H., Fang, Z., Hancock, D., Sanchez-Villeda, H., Schroeder, S. 2002. Maizedb - a functional genomics perspective. Comparative and Functional Genomics. V.3(2):128-131.
The Plant Ontology Consortium and Plant Ontologies - (Peer Reviewed Journal)
Vincent, P.L., Bruskiewich, R., Coe Jr, E.H., Jaiswal, P., Mccouch, S., Polacco, M.L., Stein, L., Ware, D. 2002. The plant ontology consortium and plant ontologies. Comparative and Functional Genomics. V.3(2):137-142.
Maizedb 2002 - (Abstract Only)
Polacco, M.L., Coe Jr, E.H., Hancock, D., Fang, Z., Schroeder, S., Sanchez-Villeda, H. 2002. Maizedb 2002. Maize Genetics Conference Abstracts. V.44:40.
The Plant Ontology Cosortium (Poc) and Plant Ontologies - (Abstract Only)
Vincent, P.L., Coe Jr, E.H., Polacco, M.L. 2002. The plant ontology cosortium (poc) and plant ontologies. Maize Genetics Conference Abstracts. V.44:43.
Maizedb: a Functional Genomics Perspective - (Abstract Only) - (10-Jan-02)
The Plant Ontology Consortium (Poc) and Plant Ontologies - (Abstract Only)
Vincent, L., Polacco, M.L., Coe Jr, E.H. 2002. The plant ontology consortium (poc) and plant ontologies. Plant and Animal Genome Abstracts. V.10:281.
An Integrated Map for Maize - (Abstract Only)
GARDINER, J., CONE, K., MCMULLEN, M.D., POLACCO, M.L., DAVIS, G., YIM, Y., SODERLUND, C., WING, R., CHEN, M., COE JR, E.H. AN INTEGRATED MAP FOR MAIZE. PLANT AND ANIMAL GENOME. 2002. ABSTRACT. P. 186.
Characterization and Physical Mapping of Maize Bac Libraries Using High Density Bac Filter Hybridization - (Abstract Only) - (10-Jan-02)
Last Modified: 11/22/2014
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