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United States Department of Agriculture

Agricultural Research Service

Related Topics

Roger Thilmony
Crop Improvement and Genetics Research
Research Molecular Biologist

Phone: (510) 559-5761
Fax: (510) 559-5818
Room 2111
USDA, ARS, PWA, WRRC-CIU
800 BUCHANAN STREET
ALBANY, CA, 94710

Projects
Molecular Tools for Improved Crop Biotechnology
Appropriated (D)
  Accession Number: 425198
Expanding the Breeder's Toolbox for Perennial Grasses
Reimbursable (R)
  Accession Number: 423725

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Transgene autoexcision in switchgrass pollen mediated by the Bxb1 recombinase Reprint Icon - (Peer Reviewed Journal)
Somleva, M.N., Chang, A.X., Ryan, K.P., Thilmony, R.L., Peoples, O., Snell, K.D., Thomson, J.G. 2014. Transgene autoexcision in switchgrass pollen mediated by the Bxb1 recombinase. BioMed Central (BMC)Biotechnology. 14:79; DOI:10.1186/1472-6750-14-79.
Net Venn - An integrated network analysis web platform for gene lists - (Peer Reviewed Journal)
Wang, Y., Thilmony, R.L., Gu, Y.Q. 2014. Net Venn - An integrated network analysis web platform for gene lists. Nucleic Acids Research. DOI: 10.1093/narlgku331.
The wheat HMW-glutenin 1Dy10 gene promoter controls endosperm expression in Brachypodium distachyon Reprint Icon - (Peer Reviewed Journal)
Thilmony, R.L., Guttman, M.E., Lin, J.W., Blechl, A.E. 2014. The wheat HMW-glutenin 1Dy10 gene promoter controls endosperm expression in Brachypodium distachyon. GM Crops. 5:36-43.
Novel gene expression tools for rice biotechnology - (Abstract Only) - (09-Jul-13)
Comparative proteomic analysis of the effect of temperature and fertilizer on gliadin and glutenin accumulation in the developing endosperm and flour from Triticum aestivum L. cv. Butte 86 - (Peer Reviewed Journal)
Hurkman II, W.J., Tanaka, C.K., Vensel, W.H., Thilmony, R.L., Altenbach, S.B. 2013. Comparative proteomic analysis of the effect of temperature and fertilizer on gliadin and glutenin accumulation in the developing endosperm and flour from Triticum aestivum L. cv. Butte 86. Proteome Science. doi:10.1186/1477-5956-11-8.
Screening promoters for Anthurium transformation using transient expression - (Peer Reviewed Journal)
Matsumoto Brower, T.K., Keith, L.M., Cabos, R.Y.M., Suzuki, J.Y., Gonsalves, D., Thilmony, R.L. 2013. Screening promoters for Anthurium transformation using transient expression. Plant Cell Reports. 32:443-451.
Piece: a Database for Plant Gene Structure Comparison and Evolution - (Peer Reviewed Journal)
Wang, Y., You, F., Lazo, G.R., Luo, M., Thilmony, R.L., Gordon, S.P., Gu, Y.Q., Kianian, S. 2012. PIECE: A database for plant gene structure comparison and evolution. Nucleic Acids Research. D1159-D1166.
Generation and characterization of the Western Regional Research Center brachypodium T-DNA insertional mutant collection - (Peer Reviewed Journal)
Bragg, J., Wu, J., Gordon, S.P., Guttman, M.E., Thilmony, R.L., Lazo, G.R., Gu, Y.Q., Vogel, J.P. 2012. Generation and characterization of the Western Regional Research Center brachypodium T-DNA insertional mutant collection. PLoS One. 7(9):e41916. doi:10.1371/journal.pone.0041916.
Bxb1 recombinase mediates site-specific deletions in transgenic wheat - (Peer Reviewed Journal)
Blechl, A.E., Lin, J.W., Shao, M., Thilmony, R.L., Thomson, J.G. 2012. Bxb1 recombinase mediates site-specific deletions in transgenic wheat. Plant Molecular Biology Reporter. doi:10.1007/s11105-012-0454-2.
The Bxb1 recombination system demonstrates heritable transmission of site-specific excision in Arabidopsis Reprint Icon - (Peer Reviewed Journal)
Thomson, J.G., Chan, R., Smith, J.D., Thilmony, R.L., Yau, Y., Wang, Y., Ow, D.W. 2012. The Bxb1 recombination system demonstrates heritable transmission of site-specific excision in Arabidopsis. BioMed Central (BMC)Biotechnology. 12:9 doi:10.1186/1472-6750-12-9.
Transformation of Lesquerella fendleri with the new binary vector pGPro4-35S - (Peer Reviewed Journal)
Chen, G.Q., Thilmony, R.L., Lin, J.T. 2012. Transformation of Lesquerella fendleri with the new binary vector pGPro4-35S. Online Journal of Biological Sciences. 11(3)90-95. DOI: 10.3844/ojbsci.2011.90.95.
Novel sull binary vectors enable an inexpensive foliar selection method in Arabidopsis - (Peer Reviewed Journal)
Thomson, J.G., Cook, M.A., Guttman, M.E., Smith, J.D., Thilmony, R.L. 2011. Novel sull binary vectors enable an inexpensive foliar selection method in Arabidopsis. BMC Research Notes. 4(44) Available: http://www.biomedcentral.com/1756-0500/4/44.
The phiC31 Recombinase Demonstrates Heritable Passage of Site-specific Genomic Excision in Arabidopsis - (Peer Reviewed Journal)
Thomson, J.G., Chan, R., Thilmony, R.L., Ow, D.W. 2010. The phiC31 Recombinase Demonstrates Heritable Passage of Site-specific Genomic Excision in Arabidopsis. BioMed Central (BMC)Biotechnology. Available: doi:10.1186/1472-6750-10-17.
The effect of high temperature on cell structure and gluten protein accumulation in the endosperm of the developing wheat (Triticum aestivum L.) grain - (Proceedings)
Hurkman Ii, W.J., Tanaka, C.K., Thilmony, R.L., Williams, T.G., Wood, D.F., Vensel, W.H., Dupont, F.M., Altenbach, S.B. 2010. The effect of high temperature on cell structure and gluten protein accumulation in the endosperm of the developing wheat (Triticum aestivum L.) grain. International Gluten Workshop. pp. 50-54.
ParA resolvase catalyzes site-specific excision of DNA from the Arabidopsis genome - (Peer Reviewed Journal)
Thomson, J.G., Yuan-Yeu, Y., Blanvillain, R., Chiniquy, D., Thilmony, R.L., Ow, D.W. 2009. ParA resolvase catalyzes site-specific excision of DNA from the Arabidopsis genome. Transgenic Research. 18:237-248.
A Simple and Inexpensive Method for Sending Binary Vector Plasmid DNA by Mail - (Peer Reviewed Journal)
Thilmony, R.L., Thomson, J.G. 2008. A simple and inexpensive method for sending binary vector plasmid dna by mail. Plant Biotechnology. 25:403-406.
Rar1, a Central Player in Plant Immunity, Is Targeted by Pseudomonas Syringae Effector Avrb - (Peer Reviewed Journal)
Shang, Y., Li, X., Cui, H., He, P., Thilmony, R.L., Chintamanani, S., Zwiesler-Vollick, J., Gopalan, S., Tang, X., Zhou, J. 2006. Rar1, a central player in plant immunity, is targeted by pseudomonas syringae effector avrb. Proceedings of the National Academy of Sciences. PNAS vol. 103 no. 50 pg. 19200-19205
Construction and Characterization of Two Bac Libraries from Brachypodium Distachypon, a New Model for Grass Genomics - (Peer Reviewed Journal)
Gu, Y., Lazo, G., Vogel, J., Coleman-Derr, D., Luo, M.C., Thilmony, R., Garvin, D., Anderson, O., Huo, N. 2006. Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome. 49(9):1099-1108.
Pgpro 1, a Novel Binary Vector for Monocot Promoter Characterization - (Peer Reviewed Journal)
Thilmony, R.L., Guttman, M.E., Chiniquy, D., Blechl, A.E. 2006. Pgpro 1, a novel binary vector for monocot promoter characterization. Plant Molecular Biology Reporter. 24:1-13, March 2006
Genome-Wide Transcriptional Analysis of the Arabidopsis Thaliana Interaction with the Plant Pathogen Pseudomonas Syringae Pv. Tomato Dc3000 and the Human Pathogen Escherichia Coli 0157:h7. - (Peer Reviewed Journal)
Thilmony, R.L., Underwood, W., He, S. 2006. Genome-wide transcriptional analysis of the compatible arabidopsis thaliana-psuedomonas syringae pv. tomato dc3000 interaction. Plant Journal. 46(1):34-53.
A Famliy of Conserved Bacterial Effectors Inhibits Salicylic Acid-Meditated Basal Immunity and Promotes Disease Necrosis in Plants - (Peer Reviewed Journal)
Debroy, S., Thilmony, R.L., Kwack, Y., Nomura, K., He, S. 2004. A famliy of conserved bacterial effectors inhibits salicylic acid-meditated basal immunity and promotes disease necrosis in plants. Proceedings of the National Academy of Sciences. 101: 9927-9932
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Last Modified: 10/21/2014
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