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United States Department of Agriculture

Agricultural Research Service

Related Topics

John Yu
Crop Germplasm Research
Research Geneticist (Plants)

Phone: (979) 260-9237
Fax: (979) 260-9333
2881 F&B ROAD
COLLEGE STATION, TX, 77845

Projects
Conservation, Genetic Analyses, and Utilization of Cotton Genetic Resources
Appropriated (D)
  Accession Number: 424619
Developing Genomic and Genetic Tools for Exploiting Cotton Genetic Variation
Appropriated (D)
  Accession Number: 424746
Genome Sequencing of Upland Cotton (Gossypium hirsutum) Genetic Standard
Nonfunded Cooperative Agreement (N)
  Accession Number: 423716
DE NOVO SNP DISCOVERY AND GBS-BASED COTTON GENOME MAP DEVELOPMENT
Specific Cooperative Agreement (S)
  Accession Number: 422744

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Genomic landscape of fiber genes in fibered and non-fibered cottons - (Abstract Only) - (01-Aug-14)
Genomic exploitation of genetic variation for crop improvement - (Abstract Only) - (01-May-14)
Genome sequence of the cultivated cotton Gossypium arboreum - (Peer Reviewed Journal)
Li, F., Fan, G., Wang, K., Sun, F., Yuan, Y., Song, G., Ma, Z., Li, Q., Lu, C., Zou, C., Chen, W., Liang, X., Shang, H., Liu, W., Xiao, G., Gou, C., Ye, W., Xu, X., Zhang, X., Wei, H., Li, Z., Zhang, G., Wang, J., Liu, K., Kohel, R.J., Percy, R.G., Yu, J., Zhu, Y., Wang, J., Yu, S. 2014. Genome sequence of the cultivated cotton Gossypium arboreum. Nature Genetics. 46(6):567-574.
The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation - (Book / Chapter)
Percy, R.G., Frelichowski, J.E., Arnold, M., Campbell, B.T., Dever, J., Fang, D.D., Hinze, L.L., Main, D., Scheffler, J.A., Sheehan, M., Ulloa, M., Yu, J., Yu, J. 2014. The U.S. National Cotton Germplasm Collection – its Contents, Preservation, Characterization, and Evaluation. In: Abdurakhmonov, I. Editor. World Cotton Germplasm Resources. Rijeka, Croatia: InTech. 167-201. Available: http://www.intechopen.com/books/world-cotton-germplasm-resources/the-u-s-national-cotton-germplasm-collection-its-contents-preservation-characterization-and-evaluation.
Toward cotton molecular breeding: challenges and opportunities - (Abstract Only) - (01-Dec-13)
BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in Upland cotton - (Peer Reviewed Journal)
Buyyarapu, R., Kantety, R.V., Yu, J., Xu, Z., Kohel, R.J., Percy, R.G., Macmil, S., Wiley, G.B., Roe, B.A., Sharma, G.C. 2013. BAC-pool sequencing and analysis of large segments of A12 and D12 homoeologous chromosomes in Upland cotton. PLoS One. 8(10): e76757. doi:10.1371/journal.pone.0076757.
Molecular diversity among G. hirsutum accessions in the Gossypium Diversity Reference Set - (Abstract Only) - (09-Jan-13)
Development of Single Nucleotide Polymorphism Markers via Sequence-based Genotyping in Cotton (Gossypium spp) - (Abstract Only) - (01-Nov-12)
A comparison of candidate gene-based and genotyping-by-sequencing (GBS) approaches to trait mapping in Gossypium barbadense L - (Abstract Only) - (01-Sep-12)
De novo SNP discovery and development of an interspecific cotton genome map using a simplified genotyping-by-sequencing (GBS) approach - (Abstract Only) - (01-Sep-12)
Localization of Allotetraploid Gossypium SNPs Using Physical Mapping Resources - (Abstract Only) - (01-Sep-12)
Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map - (Peer Reviewed Journal)
Fang, D.D., Yu, J. 2012. Addition of four-hundred fifty-five microsatellite marker loci to the high density Gossypium hirsutum TM-1 x G. barbadense 3-79 genetic map. Journal of Cotton Science. 16:229-248.
The draft genome of a diploid cotton Gossypium raimondii - (Peer Reviewed Journal)
Wang, K., Wang, Z., Li, F., Ye, W., Wang, J., Song, G., Yue, Z., Cong, L., Shang, H., Zhu, S., Zou, C., Li, Q., Yuan, Y., Lu, C., Wei, H., Gou, C., Zheng, Z., Yin, Y., Zhang, X., Liu, K., Wang, B., Song, C., Shi, N., Kohel, R.J., Percy, R.G., Yu, J., Zhu, Y., Wang, J., Yu, S. 2012. The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics. 44(10:1098-1103.
QTL analysis for transgressive resistance to root-knot nematode in interspecific cotton (Gossypium spp.) progeny derived from susceptible parents - (Peer Reviewed Journal)
Wang, C., Ulloa, M., Mullens, T.R., Yu, J.Z., Roberts, P.A. 2012. QTL analysis for transgressive resistance to root-knot nematode in interspecific cotton (Gossypium spp.) progeny derived from susceptible parents. PLoS One 7(4):e34874. doi:10.1371/journal.pone.oo34874
Development of a core set of SSR markers for the characterization of Gossypium germplasm - (Peer Reviewed Journal)
Yu, J., Fang, D.D., Kohel, R.J., Ulloa, M., Hinze, L.L., Percy, R.G., Zhang, J., Chee, P., Scheffler, B.E., Jones, D.C. 2012. Development of a core set of SSR markers for the characterization of Gossypium germplasm. Euphytica. 187(2):203-213.
Genetic diversity in the U.S. Cotton Germplasm Collection as revealed by SSR markers - (Abstract Only) - (06-Jan-12)
Genome-Wide Gossypium SNP development and validation - (Abstract Only) - (06-Jan-12)
Collaborative development of SNPs for cotton research, introgression, MAS and breeding - (Abstract Only) - (06-Jan-12)
Molecular tools for contemporary cotton breeding - (Abstract Only)
Yu, J., Fang, D.D., Abdurakhmonov, I.Y., Yu, S., Percy, R.G. 2012. Molecular tools for contemporary cotton breeding [abstract]. Proceedings of the Plant and Animal Genome Conference XX, January 14-18, 2012, San Diego, California. W543.
Genome-wide SNP development and validation for allotetraploid Gossypium - (Abstract Only)
Hulse, A.M., Wang, F., Hoegenauer, K.A., Stelly, D.M., Ashrafi, H., Van Deynze, A., Yu, J., Chen, Z., Udall, J., Jones, D.C. 2012. Genome-wide SNP development and validation for allotetraploid Gossypium [abstract]. Proceedings of the Plant and Animal Genome Conference XX, January 14-18, 2012, San Diego, California. P0199.
Development of new candidate gene and EST-based molecular markers for Gossypium species - (Peer Reviewed Journal)
Buyyarapu, R., Kantety, R.V., Yu, J., Saha, S., Sharma, G.C. 2011. Development of new candidate gene and EST-based molecular markers for Gossypium species. International Journal of Plant Genomics. 2011:Article 894598.
A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome - (Peer Reviewed Journal)
Yu, J., Kohel, R.J., Fang, D.D., Cho, J., Van Deynze, A., Ulloa, M., Hoffman, S.M., Pepper, A.E., Stelly, D.M., Jenkins, J.N., Saha, S., Kumpatla, S.P., Shah, M.R., Hugie, W.V., Percy, R.G. 2012. A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome. Genes, Genomes, Genetics. 2:43-58.
Genetic diversity in Gossypium genus - (Book / Chapter)
Abdurakhmonov, I.K., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Urmonov, K., Kushanov, F., Egamberdiev, S.S., Shapulatov, U., Abdukarimov, A., Saha, S., Jenkins, J.N., Kohel, R.J., Yu, J., Pepper, A.E., Kumpatala, S., Ulloa, M. 2012. Genetic diversity in Gossypium genus. In: Caliskan, M., editor. Genetic Diversity in Plants. InTech. p. 313-338.
Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection - (Abstract Only)
Percy, R.G., Fang, D.D., Hinze, L.L., Yu, J., Frelichowski, J.E., Scheffler, B.E., Gore, M.A. 2011. Preliminary assessment of the efficiency of a core marker set in revealing genetic diversity in the U.S. germplasm collection. In: Proceedings of the National Cotton Council Beltwide Cotton Conference, January 4-7, 2011, Atlanta, Georgia. 2011 CDROM.
Development of gene-tagged SNP markers for gland morphogenesis in cotton - (Abstract Only) - (10-Dec-10)
Use of diversity arrays technology markers for integration into a cotton reference map and anchoring to a recombinant inbred line map - (Peer Reviewed Journal)
Reddy, U.K., Rong, J., Heller-Uszynska, K., Nimmakayala, P., Vajja, G., Rahman, M.A., Yu, J., Soliman, K.M., Kilian, A., Paterson, A.H. 2011. Use of diversity arrays technology markers for integration into a cotton reference map and anchoring to a recombinant inbred line map. Genome. 54:349-359.
Polyploidization altered gene functions in cotton (Gossypium spp.) - (Peer Reviewed Journal)
Xu, Z., Yu, J., Cho, J., Yu, J., Kohel, R.J., Percy, R.G. 2010. Polyploidization altered gene functions in cotton (Gossypium spp.). PLoS One. 5(12):e14351. doi:10.1371/journal.pone.0014351.
Development and mapping of gene-tagged SNP markers for gland morphogenesis in cotton - (Peer Reviewed Journal)
Cho, J., Lu, C., Kohel, R.J., Yu, J. 2011. Development and mapping of gene-tagged SNP markers for gland morphogenesis in cotton. Journal of Cotton Science. 15:22-32.
Distribution of fiber development genes and transcription factors between At and Dt subgenomes in tetraploid cotton - (Abstract Only) - (21-Jun-10)
The construction of a tetraploid cotton genome-wide comprehensive reference map and the comparison with cotton physical mapping information - (Abstract Only) - (21-Jun-10)
Development of core SSR markers for Gossypium germplasm characterization - (Abstract Only)
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Zhang, J., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Development of core SSR markers for Gossypium germplasm characterization [abstract]. In: Proceedings of the National Cotton Council Beltwide Cotton Conferences, January 4-7, 2010, New Orleans, Louisiana. p. 811. CDROM.
Portable DNA markers tailored for systematic characterization of Gossypium germplasm - (Abstract Only)
Yu, J., Fang, D.D., Ulloa, M., Percy, R.G., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Cho, J., Campbell, B.T., Chee, P., Abdurakhmonov, I., Abdukarimov, A., Jones, D.C. 2010. Portable DNA markers tailored for systematic characterization of Gossypium germplasm [abstract]. In: Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. P149.
Sampling nucleotide diversity in cotton - (Peer Reviewed Journal)
Van Deynze, A., Stoffel, K., Lee, M., Wilkins, T.A., Kozik, A., Cantrell, R.G., Yu, J., Kohel, R.J., Stelly, D.M. 2009. Sampling nucleotide diversity in cotton. BMC Plant Biology. 9:Article 125.
New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement - (Peer Reviewed Journal)
Xiao, J., Wu, K., Fang, D.D., Stelley, D.M., Yu, J., Cantrell, R.G. 2009. New DNA Markers for the Use in Cotton (Gossypium spp.) Improvement. Journal of Cotton Science. 13(2):75-157
BAC-pool 454-sequencing: A rapid and efficient approach to sequence complex tetraploid cotton genomes - (Abstract Only)
Buyyarapu, R., Kantety, R., Xu, Z., Yu, J., Kohel, R.J., Percy, J.T., Macmil, S., Wiley, G., Roe, B., Sharma, G. 2009. BAC-pool 454-sequencing: A rapid and efficient approach to sequence complex tetraploid cotton genomes [abstract]. In: Proceedings of the Plant and Animal Genome Conference, January 10-14, 2009, San Diego, California. 2009 CDROM.
CottonDB: A resource for cotton genome research - (Abstract Only)
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2009. CottonDB: A resource for cotton genome research [abstract]. In: Proceedings of the Plant and Animal Genome Conference, January 10-14, 2009, San Diego, California. 2009 CDROM.
Distribution and organization of gene-rich islands for fiber development in the cotton genome - (Abstract Only)
Xu, Z., Kohel, R.J., Song, G., Cho, J., Alabady, M., Yu, J., Koo, P., Chu, J., Yu, S., Wilkins, T.A., Zhu, Y., Yu, J. 2009. Distribution and organization of gene-rich islands for fiber development in the cotton genome [abstract]. In: Proceedings of the Plant and Animal Genome Conference, January 10-14, 2009, San Diego, California. 2009 CDROM.
Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm - (Peer Reviewed Journal)
Abdurakhmonov, I.Y., Saha, S., Jenkins, J.N., Buriev, Z.T., Shermatov, S.E., Scheffler, B.E., Pepper, A.E., Yu, J., Kohel, R.J., Abdukarimov, A. 2009. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm. Genetica. 136:401-417.
CottonDB: A database for cotton research - (Abstract Only)
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2009. CottonDB: A database for cotton research [abstract]. Proceedings of the Beltwide Cotton Conferences, January 5-8, 2009, San Antonio, TX. 2009 CDROM.
Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm - (Peer Reviewed Journal)
Abdurakhmonov, I.Y., Kohel, R.J., Yu, J., Pepper, A.E., Abdullaev, A.A., Kushanov, F.N., Salakhutdinov, I.B., Buriev, Z.T., Saha, S., Scheffler, B.E., Jenkins, J.N., Abdukarimov, A. 2008. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm. Genomics. 92:478-487.
Perspectives of the International Cotton Genome Initiative - (Abstract Only)
Yu, J., Percy, R.G. 2008. Perspectives of the International Cotton Genome Initiative [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 2.
Sequencing of the cultivated tetraploid cotton genome - Gossypium hirsutum - (Abstract Only)
Yu, S., Wang, K., Li, F., Kohel, R.J., Percy, R.G., Yu, J. 2008. Sequencing of the cultivated tetraploid cotton genome - Gossypium hirsutum [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 4.
CottonDB enhancement - (Abstract Only)
Yu, J., Kohel, R.J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Percy, R.G. 2008. CottonDB enhancement [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 120.
An integrated genetic, physical, and transcript map of homoeologous chromosomes 12 and 26 in Upland cotton (Gossypium hirsutum L.) - (Abstract Only)
Xu, Z., Kohel, R.J., Song, G., Cho, J., Yu, J., Yu, S., Tomkins, J., Yu, J. 2008. An integrated genetic, physical, and transcript map of homoeologous chromosomes 12 and 26 in Upland cotton (Gossypium hirsutum L.) [abstract]. In: Proceedings of the International Cotton Genome Initiative Workshop, July 8-11, 2008, Anyang, China. p. 22.
Gene-rich islands for fiber development in the cotton genome - (Peer Reviewed Journal)
Xu, Z., Kohel, R.J., Song, G., Cho, J., Alabady, M., Yu, J., Poo, K., Chu, J., Yu, S., Wilkins, T.A., Zhu, Y., Yu, J. 2008. Gene-rich islands for fiber development in the cotton genome. Genomics. 92:173-183.
An integrated genetic and physical map of homoeologous chromosomes 12 and 26 in Upland cotton (G. hirsutum L.) - (Peer Reviewed Journal)
Xu, Z., Kohel, R.J., Song, G., Cho, J., Yu, J., Yu, S., Tomkins, J., Yu, J. 2008. An integrated genetic and physical map of homoeologous chromosomes 12 and 26 in Upland cotton (G. hirsutum L.). BMC Genomics. 9:108.
Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylo-genomic characterization, chromosome localization and linkage mapping - (Peer Reviewed Journal)
An, C., Saha, S., Jenkins, J.N., Ma, D., Scheffler, B.E., Kohel, R.J., Yu, J., Stelly, D.M. 2008. Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylogenomic characterization, chromosome localization and linkage mapping. Theoretical and Applied Genetics. 161:1015-1026.
Assembly and sorting of homologous BAC contigs in allotetraploid cotton genomes - (Abstract Only)
Yu, J., Xu, Z., Kohel, R.J. 2008. Assembly and sorting of homologous BAC contigs in allotetraploid cotton genomes [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 8-11, 2008, Nashville, Tennessee. 2008 CDROM.
Insights from the International Cotton Genome Initiative - (Abstract Only)
Yu, J., Percy, R.G., Brubaker, C.L., Kohel, R.J., Stelly, D.M., Cantrell, R.G. 2008. Insights from the International Cotton Genome Initiative [abstract]. In: Proceedings of Plant and Animal Genome XVI Conference, January 12-16, 2008, San Diego, California. Paper No. W327.
The utility of a 384 Illumina Bead array in cotton - (Abstract Only)
Van Deynze, A., Lund, J., Yu, J., Kohel, R.J., Yang, S.S., Stelly, D.M. 2008. The utility of a 384 illumina bead array in cotton [abstract]. In: Proceedings of Plant and Animal Genome XVI Conference, January 12-16, 2008, San Diego, California. Paper No. W252.
Separation of homologous BAC contigs in the tetraploid Upland cotton - (Abstract Only)
Xu, Z., Kohel, R.J., Song, G., Cho, J., Yu, J., Dong, J., Tomkins, J., Yu, J. 2008. Separation of homologous BAC contigs in the tetraploid Upland cotton [abstract]. In: Proceedings of Plant and Animal Genome XVI Conference, January 12-16, 2008, San Diego, California. Paper No. P212.
Bac-Derived Ssr Chromosome Locations in Cotton - (Peer Reviewed Journal)
Guo, Y., Saha, S., Yu, J., Jenkins, J.N., Kohel, R.J., Scheffler, B.E., Stelly, D.M. 2008. BAC-derived SSR chromosome locations in cotton. Euphytica. 161:361-370.
Lessons Learned and Challenges Ahead for Cotton Genome Mapping. Reprint Icon - (Proceedings)
Ulloa, M., Saha, S., Yu, J., Jenkins, J.N., Meredith Jr, W.R., Kohel, R.J. 2008. Lessons Learned and Challenges Ahead for Cotton Genome Mapping. World Cotton Res. Conf. (Proc) paper no. 1798.
CottonDB: Cotton Genome Database - (Abstract Only)
Yu, J., Hinze, L.L., Frelichowski, J.E., Xu, Z., Yu, J., Kohel, R.J. 2008. CottonDB: Cotton Genome Database [abstract]. In: Proceedings of Plant and Animal Genome Conference XVI, January 12-16, 2007, San Diego, California. Paper No. W253.
CottonDB Enhancement - (Proceedings) - (04-Oct-07)
The International Cotton Genome Initiative: Opportunities and Challenges - (Abstract Only) - (10-Sep-07)
Lessons Learned and Challenges Ahead of the Cotton Genome Mapping. Reprint Icon - (Abstract Only)
Ulloa, M., Saha, S., Yu, J. 2007. Lessons Learned and Challenges Ahead of the Cotton Genome Mapping. Refereed Proc. World Cotton Res. Conf. Lubbock, TX CDROM paper no. 1853.
Towards Sequencing Cotton (Gossypium) Genomes - (Peer Reviewed Journal)
Chen, Z., Scheffler, B.E., Dennis, E., Triplett, B.A., Zhang, T., Chen, X., Stelly, D., Rabinowicz, P., Town, C., Arioli, T., Brubaker, C., Cantrell, R., Lacape, J., Ulloa, M., Chee, P., Gingle, A.R., Haigler, C.H., Percy, R.G., Saha, S., Wilkins, T., Wright, R.I., Van Deynze, A., Zhu, Y., Yu, S., Guo, W., Abdurakhmonov, I., Katageri, I., Ur-Rahman, M., Zafar, Y., Yu, J., Kohel, R.J., Wendel, J., Paterson, A. 2007. Towards Sequencing Cotton (Gossypium) Genomes. Plant Physiology. 145:1303-1310.
Indentification of 700 new microsatellite loci from cotton (G. hirsutum) - (Peer Reviewed Journal)
Hoffman, S.M., Yu, J., Grum, D.S., Xiao, J., Kohel, R.J., Pepper, A.E. 2007. Indentification of 700 new microsatellite loci from cotton (G. hirsutum). Journal of Cotton Science. 11:208-241.
Microsatellite Markers Associated with Cotton Fiber Development - (Peer Reviewed Journal)
Abdurakhmonov, I.Y., Buriev, Z.T., Saha, S., Pepper, A.E., Musaev, J.A., Almatov, A., Shermatov, S.E., Kushanov, F.N., Mavlonov, G.T., Reddy, U.K., Yu, J., Jenkins, J.N., Kohel, R.J., Abdukarimov, A. 2007. Microsatellite markers associated with lint percentage trait in cotton, Gossypium hirsutum. Euphytica. 156:141-156.
Development of Gene-based Markers and their Chromosomal Localization in Cotton (Gossypium sp.) - (Abstract Only)
Buyyarapu, R., Kantety, R., Saha, S., Yu, J., Soliman, K., Sharma, G. 2007. Development of gene-based markers and their chromosomal localization in cotton (Gossypium sp.). Plant and Animal Genome Conference. p. 118.
The R2R3-Myb transcription fators of cotton: SNP characterization, chromosomal assignment, and phylogenetic analysis - (Abstract Only)
An, C., Saha, S., Jenkins, J.N., Scheffler, B.E., Ma, D-P., Stelly, D.M. 2007. MYB genes, a family of transcription fators: SNPS characterization, chromosomal location, and phylogenetic analysis [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1620.
An integrated BAC/BIBAC-based physical and genetic map of the cotton genome - (Abstract Only)
Xu, Z., Yu, J., Cho, J., Coveleda, L., Dong, J., Song, G., Zhang, L., Atkins, M., Yu, J., Ding, K., Ulloa, M., Tomkins, J., Stelly, D.M., Zhang, H., Kohel, R.J. 2007. An integrated BAC/BIBAC-based physical and genetic map of the cotton genome [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. W198.
Developement of gene and EST-based markers and their chromosomal localization in cotton - (Abstract Only)
Buyyarapu, R., Kantety, R., Saha, S., Yu, J., Soliman, K., Sharma, G. 2007. Developement of gene and EST-based markers and their chromosomal localization in cotton [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. P118.
Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton - (Abstract Only)
Abdurakhmonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Abdullaev, A., Shermatov, S., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2007. Genome-wide linkage disequilibruim revealed by microsatellite markers and association study of fiber quality traits in cotton [abstract]. In: Proceedings of Plant and Animal Genome XV Conference, January 13-17, 2007, San Diego, California. Paper No. W199.
Analysis of fiber quality traits in a seven-parent upland cotton diallel - (Abstract Only)
Hinze, L.L., Yu, J., Kohel, R.J. 2007. Analysis of fiber quality traits in a seven-parent upland cotton diallel [abstract]. In: Proceedings of Beltwide Cotton Conferences, January 9-12, 2007, New Orleans, Louisiana. Paper No. 6497.
Linkage Disequilibrium Based Association Mapping of Fiber Quality Traits in Cotton Using Diverse Cotton Germplasm from Uzbekistan - (Abstract Only)
Abdurakhomonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, Z.T., Shermatov, S.E., Abdullaev, A.A., Kushanov, F.N., Jenkins, J.N., Scheffler, B.E., Abdukarimov, A. 2006. Linkage disequilibrium based association mapping of fiber quality traits in cotton using diverse cotton germplasm from Uzbekistan [abstract]. In: Proceedings of International Cotton Genome Initiative Workshop, Structural Genomics Session, September 18-20, 2006, Brasilia, Brazil. Paper No. 7. Available: http://icgi.tamu.edu/pdf/icgi06_abs_final.pdf.
Cottonseed - (Book / Chapter)
Kohel, R.J., Yu, J. 2006. Cottonseed. In: Singh, R.J., editor. Genetic Resources, Chromosome Engineering, and Crop Improvement, Vol. 4, Oilseed Crops. New York, NY: CRC Press. p. 89-102.
COTTONDB.ORG - New Website for Cotton Genome Database - (Abstract Only)
Yu, J., Hinze, L.L., Yu, J., Kohel, R.J. 2006. CottonDB.org - New website for cotton genome database [abstract]. In: Proceedings of International Cotton Genome Initiative Workshop, Evolutionary and Comparative Genomics and Bioinformatics Session, September 18-20, 2006, Brasilia, Brazil. Paper No. 4. Available: http://icgi.tamu.edu/pdf/icgi06_abs_final.pdf.
Cmd: a Cotton Microsatellite Database Resource for Gossypium Genomics - (Peer Reviewed Journal)
Blenda, A.V., Scheffler, J.A., Scheffler, B.E., Palmer, M., Lacape, J., Yu, J., Jesudraui, C., Jung, S., Muthukumar, S., Yellambalase, P., Ficklin, S., Staton, M., Eschelman, R., Ulloa, M., Saha, S., Burr, B., Lui, S., Zhang, T., Fang, D., Pepper, A.E., Kumpatla, S.P., Jacobs, J., Tomkins, J.P., Cantrell, R.G., Main, D. 2006. CMD: A Cotton Microsatellite Database Resource for Gossypium Genomics. Biomed Central (BMC) Genomics. 7:132.
Complete Assignment of the G. Hirsutum L. Chomosomes by Bac-Fish and Translocation Analyses - (Peer Reviewed Journal)
Wang, K., Song, X., Han, Z., Guo, W., Yu, J., Sun, J., Pan, J., Kohel, R.J., Zhang, T. 2006. Complete assignment of the G. hirsutum L. chromosomes by BAC-FISH and translocation analyses. Journal of Theoretical and Applied Genetics. 113:73-80.
Association Analysis of Morphological Characters with Molecular Markers in a Tm-1 X 3-79 RI Population Grown in Three Diverse Environments - (Abstract Only)
Hoffman, S., Kohel, R.J., Ulloa, M., Cho, J., Xu, Z., Smith, W., Pepper, A., Cantrell, R., Yu, J. 2006. Association analysis of morphological characters with molecular markers in a TM-1 x 3-79 RIL population grown in three diverse environments [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 3-6, 2006, San Antonio, Texas. 2006 CDROM.
Characterization of 656 New Ssr Markers Developed from Gossypium Hirsutum Sequences - (Abstract Only)
Hoffman, S., Yu, J., Kohel, R.J., Cantrell, R.G., Xiao, J., Pepper, A. 2006. Characterization of 656 new SSR markers developed from Gossypium hirsutum sequences [abstract]. Proceedings of Plant and Animal Genome XIV Conference. Paper No. P157.
Distribution of Fiber Elongation Genes in the Upland Cotton Genome - (Abstract Only)
Xu, Z., Song, G., Cho, J., Jianmin, D., Koo, P., Kohel, R.J., Yu, J. 2006. Distribution of fiber elongation genes in the upland cotton genome [abstract]. Proceedings of Plant and Animal Genome XIV Conference. Paper No. P684.
Development of Pcr-Based Markers from Fiber Ests and Bac-End Sequences for the Construction of a Consensus Cotton Genetic Map. - (Proceedings)
Ulloa, M., Frelichowski, J.E., Palmer, M., Park, Y.h., Alabady, M.S., Wilkins, T.A., Yu, J., Kohel, R., Cantrell, R., Main, D., Tomkins, J.P., Stelly, D., VanDeynze, A. 2006. Development of PCR-based markers from fiber ESTs and BAC-end sequences for the construction of a consensus cotton genetic map. Plant and Animal Genome XIV Conference Proceedings. p. 42.
Cotton Marker Database - (Abstract Only) - (06-Jan-06)
Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. - (Peer Reviewed Journal)
Frelichowski, J.E., Palmer, M.B., Main, D., Tomkins, J.P., Cantrell, R.G., Stelly, D.M., Yu, J., Kohel, R.J., Ulloa, M. 2006. Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends. Mol. Genet. Genom. 275:479-491.
Wide-Cross Whole-Genome Radiation Hybird Mapping of the Cotton (Gossypium Barbadense L.) Genome - (Peer Reviewed Journal)
Gao, W., Chen, Z.J., Yu, J., Kohel, R.J., Womack, J.E., Stelly, D.M. 2005. Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome. Molecular Genetics and Genomics. 275:105-113.
Characterizaion of G. Hirsutum Wild and Variety Accessions from Uzbek Cotton Germplasm Collection for Morphological and Fiber Quality Traits and Database Developement - (Proceedings)
Abdurakhmonov, I.Y., Buriev, Z.T., Kohel, R.J., Yu, J., Pepper, A.E., Rizaeva, S.M., Abdukarimov, A., Saha, S., Jenkins, J.N. 2006. Characterizaion of G. hirsutum wild and variety accessions from Uzbek cotton germplasm collection for morphological and fiber quality traits and database developement. In: Proceedings of the Beltwide Cotton Conferences, January 3-6, 2006, San Antonio, Texas. 2006 CDROM.
Molecular Genetic Diversity of G. Hirsutum Cotton Accession from Uzbek Cotton Germplasm Revealed by a Core Set and Chromosome Specific Microsatellite Markers - (Abstract Only)
Abdurakhmonov, I.Y., Kohel, R.J., Saha, S., Pepper, A.E., Yu, J., Buriev, T.Z., Shermatov, S., Abdullaev, A., Jenkins, J.N., Abdukarimov, A. 2006. Molecular genetic diversity of G. hirsutum cotton accession from Uzbek cotton germplasm revealed by a core set and chromosome specific microsatellite markers [abstract]. Proceedings of Plant and Animal Genome XIV Conference. Paper No. P131.
Diallel Analysis of Fiber Quality Traits in Upland Cotton - (Abstract Only)
Hinze, L.L., Kohel, R.J., Yu, J. 2005. Diallel analysis of fiber quality traits in upland cotton [abstract]. American Society of Agronomy. Paper No. 8687.
Genetic Mapping of New Cotton Fiber Loci Using Est-Derived Microsatellites in An Interspecific Recombinant Inbred Line Cotton Population. - (Peer Reviewed Journal)
Park, Y.H., Alabady, M.S., Ulloa, M., Sickler, B., Wilkins, T.A., Yu, J., Stelly, D.M., Kohel, R.J., El-Shihy, O.M., Cantrell, R.G. 2005. Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line cotton population. Mol. Genet.Genom. 274:428-441.
The International Cotton Genome Initiative Workshop 1, at Pag XIII - (Review Article)
Kohel, R.J., Yu, J. 2005. The international cotton genome initiative workshop 1, at PAG XIII. Comparative and Functional Genomics. 6:170-173.
Chromosomal Assignment of Bac-Derived Ssr Markers in Cotton (Gossypium Hirsutum L.) - (Abstract Only)
Guo, Y., Saha, S., Yu, J., Jenkins, J.N., Kohel, R.J., Stelly, D.M. 2005. Chromosomal assignment of bac-derived SSR markers in cotton (Gossypium hirsutum L.) [abstract]. National Cotton Council Beltwide Cotton Conference. p. 1067.
A Syntenic Study Between Cotton and Arabidopsis Using Integrated Physical Maps and Conserved Ortholog Markers - (Abstract Only)
Xu, Z., Kohel, R.J., Dong, J., Zhang, H., Stelly, D.M., Covaleda, L., Koo, P., Yu, J. 2005. A syntenic study between cotton and Arabidopsis using integrated physical maps and conserved ortholog markers [abstract]. Plant and Animal Genome XIII Conference. p. 135.
Physical Mapping of Fiber Development Genes in Cotton - (Abstract Only)
Yu, J., Kohel, R.J., Xu, Z., Dong, J., Zhang, H., Stelly, D.M., Zhu, Y., Covaleda, L. 2005. Physical mapping of fiber development genes in cotton [abstract]. Plant and Animal Genome XIII Conference. p. 225.
Integrative Physical Mapping of the Cotton Genome and Its Synteny with Arabidopsis - (Abstract Only)
Yu, J., Kohel, R.J., Zhang, H.B., Xu, Z., Dong, J., Lee, M., Cui, P., Covaleda, L. 2004. Integrative physical mapping of the cotton genome and its synteny with Arabidopsis [abstract]. American Society of Agronomy. 2004 CDROM.
Ssr Genotyping of 191 Recombinant Inbred Cotton Lines That Were Derived from the Tm-1 X 3-79 Cross - (Abstract Only)
Kohel, R.J., Yu, J. 2004. SSR genotyping of 191 recombinant inbred cotton lines that were derived from the TM-1 x 3-79 cross [abstract]. American Society of Agronomy. 2004 CDROM.
Integrated Genetic, Physical, and Comparative Mapping of the Cotton Genome - (Abstract Only)
Yu, J., Kohel, R.J., Xu, Z., Dong, J., Cui, P., Hoffman, S.M., Zhang, H., Stelly, D.M., Pepper, A.E. 2005. Integrated genetic, physical, and comparative mapping of the cotton genome [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 4-7, 2005, New Orleans, Louisiana. 2005 CDROM.
A Comparison of Genome Mapping Tools in Plants - (Abstract Only)
Todd, S.M., Pepper, A.E., Ford, J., Stelly, D.M., Hoffman, S.M., Yu, J., Gao, W. 2005. A comparison of genome mapping tools in plants [abstract]. In: Proceedings of the Beltwide Cotton Conferences, January 4-7, 2005, New Orleans, Louisiana. 2005 CDROM.
Molecular Mapping of Qtls for Fiber Qualities in Three Diverse Lines of Upland Cotton Using Ssr Markers - (Peer Reviewed Journal)
Shen, X., Guo, W., Zhu, X., Yu, J., Kohel, R.J., Zhang, T. 2005. Molecular mapping of QTLs for fiber qualities in three diverse lines of upland cotton using SSR markers. Molecular Breeding. 15:169-181.
Molecular Markers Run on a Test Panel: a Data Source for the Cotton Community - (Abstract Only)
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: a data source for the cotton community. International Cotton Genome Initiative Workshop.
Permanent Recombinant Inbred Mapping Population for Cotton Genome Research - (Abstract Only)
Kohel, R.J., Yu, J. 2004. Permanent recombinant inbred mapping population for cotton genome research [abstract]. International Cotton Genome Initiative Workshop. p. 44.
Molecular Mapping of Qtls for Fiber Quality in Upland Cotton Using Ssr Markers - (Abstract Only)
Zhang, T., Shen, X., Guo, W., Yu, J., Kohel, R.J. 2004. Molecular mapping of QTLs for fiber quality in upland cotton using SSR markers [abstract]. International Cotton Genome Initiative Workshop. p. 33.
Molecular Markers Run on a Test Panel: a Data Source for the Cotton Community - (Abstract Only)
Scheffler, B.E., Taliercio, E.W., Scheffler, J.A., Yu, J. 2004. Molecular markers run on a test panel: A data source for the cotton community [abstract]. International Cotton Genome Initiative Workshop. Paper No. 18-45.
Evaluation of Fiber Quality and Other Agronomic Traits of G. Hirsutum Accessions from Uzbek Cotton Germplasm - (Abstract Only)
Abdurakhmonov, I., Buriev, Z.T., Kohel, R.J., Yu, J., Pepper, A.E., Saha, S. 2004. Evaluation of fiber quality and other agronomic traits of G. hirsutum accessions from Uzbek cotton germplasm [abstract]. International Cotton Genome Initiative Workshop. p. 88.
Wide-Cross Whole-Genome Radiation Hybrid (Wwrh) Resources for Cotton Genomics - (Abstract Only)
Stelly, D.M., Gao, W., Todd, S.Z., Chen, J., Yu, J. 2004. Wide-cross whole-genome radiation hybrid (WWRH) resources for cotton genomics [abstract]. International Cotton Genome Initiative Workshop. p. 25.
Genetic, Physical and Qtl Mapping Assessments of Bac-End Derived Microsatellite Markers Developed from Cotton (Gossypium Hirsutum L.) Acala 'maxxa'. - (Proceedings)
Frelichowski, J.E., Ulloa, M., Palmer, M., Main, D., Tomkins, J.P., Stelly, D.M., Kohel, R.J., Yu, J., Cantrell, R.G. 2005. Genetic, physical and QTL mapping assessments of bac-end derived microsatellite markers developed from cotton (gossypium hirsutum l.) acala cv. 'maxxa'. Plant and Animal Genome XIII Conference Proceedings. p. 225.
A Minimal Tiling Path for Maximal Genome Coverage: International Collaboration on the Global Bac Sequencing Platform - (Abstract Only)
Yu, J. 2004. A minimal tiling path for maximal genome coverage: International collaboration on the global BAC sequencing platform [abstract]. International Cotton Genome Initiative Workshop. p. 24.
Integrated Physical Mapping of the Cotton Genome - (Abstract Only)
Yu, J., Kohel, R.J., Zhang, H.B., Xu, Z., Dong, J. 2004. Integrated physical mapping of the cotton genome [abstract]. International Cotton Genome Initiative Workshop. p. 24.
Ssr Genotyping of 191 Recombinant Inbred Cotton Lines That Were Derived from the Tm-1 X 3-79 Cross - (Abstract Only) - (13-Aug-04)
Cloning, Characterization, and Evaluation of the Nbs-Lrr-Encoding Resistance Gene Analogue Family in Polyploid Cotton (Gossypium Hirsutum L.) - (Peer Reviewed Journal)
He, L., Du, C., Covaleda, L., Xu, Z., Robinson, A.F., Yu, J., Kohel, R.J., Zhang, H. 2004. Cloning, characterization, and evaluation of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.). Molecular Plant Microbe Interactions. 17(11):1234-1241.
Integrative Physical Mapping of the Cotton Genome and Its Synteny with Arabidopsis - (Abstract Only)
Yu, J., Kohel, R.J., Zhang, H.B., Xu, Z., Dong, J., Lee, M., Cui, P., Covaleda, L. 2004. Integrative physical mapping of the cotton genome and its synteny with Arabidopsis [abstract]. American Society of Agronomy. 2004 CDROM.
Permanent Recombinant Inbred Mapping Population for Cotton Genome Research - (Abstract Only) - (28-Jul-04)
A Standard Panel of Gossypium Genotypes Established for Systematic Characterization of Cotton Microsatellite Markers - (Research Notes)
Yu, J. 2004. A standard panel of Gossypium genotypes established for systematic characterization of cotton microsatellite markers. Plant Breeding News. p. 148. Available: http://www.fao.org/waicent/faoinfo/agricult/agp/agpc/doc/services/pbn.html.
Cloning, Characterization, and Evolution of the Nbs-Lrr-Encoding Resistance Gene Analogue Family in Polyploid Cotton (Gossypium Hirsutum L.) - (Peer Reviewed Journal)
He, L.M., Du, C.G., Covaleda, L., Robinson, A.F., Yu, J., Kohel, R.J., Zhang, H.B. 2004. Cloning, characterization, and evolution of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.). Molecular Plant-Microbe Interactions. 17(11):1234-1241.
Towards the International Collaboration on Cotton Structural Genomics - (Proceedings)
Yu, J., Zhang, T. 2004. Towards the international collaboration on cotton structural genomics. In: Proceedings of the Beltwide Cotton Conferences, January 6-9, 2004, San Antonio, Texas. 2004 CDROM.
Toward An Integrated Physical and Genetic Map of the Cultivated Cotton Genome: Physical Map Contig Assembling and Anchoring to Its Subgenomes - (Proceedings)
Xu, Z., Yu, J., Covaleda, L., Dong, J., Lee, M., Ding, K., Kohel, R.J., Zhang, H. 2004. Toward an integrated physical and genetic map of the cultivated cotton genome: Physical map contig assembling and anchoring to its subgenomes [abstract]. Plant and Animal Genome Conference XII. Paper No. P759.
Establishment of the Standardized Cotton Microsatellite Database (Cmd) Panel - (Proceedings)
Yu, J., Kohel, R.J., Cantrell, R., Jones, D., Saha, S., Thomkins, J., Main, D., Palmer, M., Pepper, A., Stelly, D., Ulloa, M., Scheffler, J.A. 2004. Establishment of the standardized cotton microsatellite database (cmd) panel. In: Proceedings of the Beltwide Cotton Conferences, January 6-9, 2004, San Antonio, Texas. 2004 CDROM.
Toward An Integrated Physical and Genetic Map of the Cultivated Allotetraploid Cotton Genome - (Abstract Only)
Yu, J., Kohel, R.J., Zhang, H., Stelly, D.M., Xu, Z., Dong, J., Covaleda, L., Lee, M., Cui, P., Lazo, G.R., Gupta, P., Ding, K. 2004. Toward an integrated physical and genetic map of the cultivated allotetraploid cotton genome [abstract]. Plant and Animal Genome Conference XII. Paper No. W147.
Wide-Cross Whole-Genome Radiation Hybrid (Wwrh) Mapping of Cotton (G. Hirsutum L.) - (Peer Reviewed Journal)
Gao, W., Chen, J., Yu, J., Raska, D., Kohel, R.J., Womack, J.E., Stelly, D.M. 2003. Wide-cross whole-genome radiation hybrid (WWRH) mapping of cotton (G. hirsutum L.). Genetics. 167:1317-1329.
Expanding Cotton's Genetic Base - (Trade Journal)
YU, J. EXPANDING COTTON'S GENETIC BASE. Cotton Farming. May 2003. p. 10.
Integrative Physical and Genetic Mapping of the Cotton Genome (Gossypium Hirsutum L.) - (Abstract Only)
YU, J., KOHEL, R.J., ZHANG, H., STELLEY, D.M., DONG, J., XU, Z., COVALEDA, L., ZHANG, L., GAO, W., SUN, S. INTEGRATIVE PHYSICAL AND GENETIC MAPPING OF THE COTTON GENOME (GOSSYPIUM HIRSUTUM L.). PLANT AND ANIMAL GENOME CONFERENCE PROCEEDINGS.
Toward An Integrated Physical and Genetic Map of Cotton Gemone: Bac Fingerprinting and Physical Map Construction. - (Abstract Only)
Xu, Z., Yu, J., Covaleda, L., Lee, M., Dong, J., Ding, K., Kohel, R.J., Zhang, H. 2003. Toward an integrated physical and genetic map of the cotton genome: BAC fingerprinting and physical map construction [abstract]. Plant and Animal Genome XI Conference. Paper No. P689.
Radiation Doses for Wide-Cross Whole-Genome Radiation Hybrid Mapping of the Cotton (Gossypium Hirsutum L.) Genome - (Abstract Only)
Gao, W., Chen, J., Yu, J., Raska, D., Kohel, R.J., Smith, C.W., Womack, J.E., Stelly, D.M. 2003. Radiation doses for wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium hirsutum L.) genome [abstract]. Plant and Animal Genome XI Conference. Paper No. P688.
Integrated Genome Mapping for Cotton Improvement - (Abstract Only)
KOHEL, R.J., YU, J., DONG, J., STEELE, N.L., ZHANG, H., XU, Z. INTEGRATED GENOME MAPPING FOR COTTON IMPROVEMENT. NATIONAL COTTON COUNCIL BELTWIDE COTTON CONFERENCE. 2002.
Molecular Characterization of Gossypium Germplasm for Cotton Improvement - (Book / Chapter)
Kohel, R.J., Yu, J. 2002. Molecular characterization of Gossypium germplasm for cotton improvement. In: Engels, J.M.M., Rao, V.R., Brown, A.H.D., Jackson, M.T., editors. Managing Plant Genetic Resources. Cambridge, MA: CAB International Publishing, Inc. p. 67-75.
Molecular Tagging of a Major Qtl for Fiber Strength in Upland Cotton and into Marker Assisted Selection - (Peer Reviewed Journal)
Zhang, T., Yuan, Y., Yu, J., Guo, W., Kohel, R.J. 2003. Molecular tagging of a major QTL for fiber strength in upland cotton and its marker-assisted selection. Theoretical and Applied Genetics. 106:262-268.
Permanent Mapping Population of the Cotton Genome - (Abstract Only)
Yu, J., Kohel, R.J. 2002. Permanent mapping population of the cotton genome [abstract]. American Society of Agronomy Meetings. 2002 CDROM.
Permanent Mapping Population of the Cotton Genome - (Abstract Only)
YU, J., KOHEL, R.J. PERMANENT MAPPING POPULATION OF THE COTTON GENOME. AMERICAN SOCIETY OF AGRONOMY MEETINGS. 2002.
Permanent Mapping Population of the Cotton Genome - (Abstract Only)
Yu, J., Kohel, R.J. 2002. Permanent mapping population of the cotton genome. American Society of Agronomy Meetings. 2002 CDROM.
Toward Development of a Whole-Genome, Bac/bibac-Based Integrated Physical/genetic Map of the Cotton Genome Using the Upland Cotton Genetic Standard Tm-1: Bac Fingerprinting and Physical Map Contig Construction. - (Abstract Only)
Zhang, H., Yu, J., Kohel, R.J., Stelly, D.M., Xu, Z., Covaleda, L., Ding, K., Zhang, L., Wu, C., Lee, M. 2002. Toward development of a whole-genome, BAC/BIBAC-based integrated physical/genetic map of the cotton genome using the upland cotton genetic standard TM-1: BAC fingerprinting and physical map contig construction [abstract]. International Cotton Genome Initiative Workshop. p. 33.
Cotton Germplasm: Resources and Tools for Characterization - (Abstract Only)
Percival,Jr., A.E., Kohel, R.J., Yu, J. 2002. Cotton germplasm: Resources and tools for characterization [abstract]. International Cotton Genome Initiative Workshop. p. 82.
Major-Polygene Effect Analysis of Super Quality Fiber Properties in Upland Cotton (G. Hirsutum. L.) - (Peer Reviewed Journal)
Yuan, Y.L., Zhang, T.Z., Guo, W.Z., Yu, J., Kohel, R.J. 2002. Major-polygene effect analysis of super quality fiber properties in upland cotton (g. hirsutum. l.). Acta Genetica Scinica. 29(9):827-834.
Genomics Research in Cotton - (Proceedings) - (20-Jan-02)
Update of the Cottondb - (Abstract Only)
Yu, J., Kohel, R.J., Gupta, P. 2002. Update of the CottonDB [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. W90.
Wide-Cross Radiation Hybrids(wrhs): a Tool for Physical Mapping of Plant Genomes? - (Abstract Only)
Gao, W., Raska, D., Yu, J., Kohel, R.J., Chen, J., Stelly, D.M. 2002. Wide-cross radiation hybrids(wrhs): A tool for physical mapping of plant genomes? [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. P646.
Toward Development of An Integrated Physical/genetic Map of the Cotton Genome: Large-Scale Generation of Ssr Markers from a Bac Library of the Cotton Genetic Standard Line Tm-1 - (Abstract Only)
Dong, J., Kohel, R.J., Zhang, H., Yu, J. 2002. Toward development of an integrated physical/genetic map of the cotton genome: Large-scale generation of SSR markers from a BAC library of the cotton genetic standard line TM-1 [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. P220.
Development of Molecular Cytogenetic Markers in Cotton - (Abstract Only)
Zhang, L., Dong, J., Decanini, L., Le, M.K., Ren, C., Yan, B., Kohel, R.J., Yu, J., Zhang, H., Stelly, D.M. 2002. Development of molecular cytogenetic markers in cotton [abstract]. Plant, Animal, and Microbe Genomes X Conference. Paper No. P285.
Genetic Stability of a Major Qtl for Fiber Strength and Its Marker-Assisted Selection in Upland Cotton - (Abstract Only) - (16-Jan-02)
Development of Integrative Ssr Markers from Tm-1 Bacs - (Abstract Only)
Yu, J., Kohel, R.J., Dong, R.J. 2002. Development of integrative SSR markers from TM-1 BACs [abstract]. Proceedings of Beltwide Cotton Conferences. 2002 CDROM.
Genomic Research in Cotton - (Abstract Only)
Zhang, H., He, L., Zhang, L., Lee, M., Stelly, D.M., Covaleda, L.M., Robinson, F., Yu, J., Kohel, R.J., Cook, C.G. 2002. Genomic research in cotton [abstract]. Proceedings of Beltwide Cotton Conferences. 2002 CDROM.
Toward Development of a Whole-Genome, Bac/bibac-Based Integrated Physical/genetic Map of the Cotton Genome Using the Upland Genetic Standard Tm-1:bac and Bibac Library Construction, Ssr Marker Development, and Physical/geneti - (Proceedings)
YU, J., KOHEL, R.J., ZHANG, H., DONG, J., SUN, S., STEELE, N. TOWARD DEVELOPMENT OF A WHOLE-GENOME, BAC/BIBAC-BASED INTEGRATED PHYSICAL/GENETIC MAP OF THE COTTON GENOME USING THE UPLAND GENETIC STANDARD TM-1: BAC AND BIBAC LIBRARY CONSTRUCTION, SSR MARKER DEVELOPMENT, AND PHYSICAL/GENETICS. PROCEEDINGS OF INTERNATIONAL COTTON GENOME INITIATIVE WORKSHOP. 2002. V. 14. P. 32.
Cotton Databases and Web Resources - (Proceedings)
KOHEL, R.J., YU, J., GUPTA, P., AGRAWAL, R. COTTON DATABASES AND WEB RESOURCES. PROCEEDINGS OF INTERNATIONAL COTTON GENOME INITIATIVE WORKSHOP. 2002. V. 14. P. 104.
Development of Integratice Ssr Markers from the Tm-1 Bac - (Abstract Only) - (08-Jan-02)
Genomics Research in Cotton - (Abstract Only)
Zhang, H.B., He, L., Zhang, L., Lee, M.K., Stelly, D.M., Covaleda, L.M., Robinson, F., Yu, J., Kohel, R.J., Cook, C.G. 2002. Genomics research in cotton [abstract]. Proceedings of Beltwide Cotton Conferences. 2002 CDROM.
Tests of Six Cotton (Gossypium Hirsutum L.) Mutants for Association with Aneuploids - (Peer Reviewed Journal) - (20-Dec-01)
Development of Scar Marker Linked to Amajor Qtl for High Fiber Strength and Its Molecular Marker Assisted Selection in Upland Cotton - (Peer Reviewed Journal)
Guo, W.Z., Zhang, T.Z., Sheng, X.L., Yu, J., Kohel, R.J. 2003. Development of scar marker linked to a major QTL for high fiber strength and its molecular marker assisted selection in upland cotton. Crop Science. 43:2252-2256.
Ssr Molecular Tagging of Qtls for Fiber Strenth in Upland Cotton - (Peer Reviewed Journal)
Zhang, T., Yuan, Y., Guo, W., Yu, J., Kohel, R.J. 2001. SSR molecular tagging of QTLs for fiber strength in upland cotton. Scienta Agricultra Scinica. 34:363-366.
Evaluation of Cotton Transformation Via Pollen-Tube Pathway - (Abstract Only)
Kohel, R.J., Yu, J. 2001. Evaluation of cotton transformation via pollen-tube pathway [abstract]. American Society of Agronomy Meetings. 2001 CDROM.
Molecular Tagging of a Major Qtl for Fiber Strength in Upland Cotton and Its Marker-Assisted Selection - (Peer Reviewed Journal) - (06-Aug-01)
Molecular Tagging and Mapping of Qtls for Super Quality Fiber Properties in Upland Cotton - (Peer Reviewed Journal)
Yuan, Y.L., Zhang, T.Z., Guo, W.Z., Shen, X.L., Yu, J., Kohel, R.J. 2001. Molecular tagging and mapping of QTLs for super quality fiber properties in upland cotton. Acta Genetica Scinica. 28(12):1-11.
Cotton Genome Research in the United States - (Book / Chapter)
Yu, J., Kohel, R.J. 2001. Cotton genome research in the United States. In: Jenkins, J.N., Saha, S., editors. Genetic Improvement of Cotton: Emerging Technologies. Enfield, NH: Science Publishers, Inc. p. 103-121.
Molecular Mapping and Characterization of Genes Controlling Fiber Quality in Cotton - (Peer Reviewed Journal)
KOHEL, R.J., YU, J., PARK, Y.H., LAZO, G.R. MOLECULAR MAPPING AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY IN COTTON. EUPHYTICA. 2001. V. 121. P. 163-172.
Molecular Characterization of Gossypium Germplasm - (Abstract Only)
Yu, J., Kohel, R.J., Percival,Jr., A.E., Lewis, J.L. 2001. Molecular characterization of Gossypium germplasm [abstract]. Plant and Animal Genome IX Conference. Paper No. P633.
Bacterial Artificial Chromosome (Bac) Libraries Constructed from the Genetic Standard of Upland Cottons - (Abstract Only)
Dong, J., Kohel, R.J., Zhang, H., Yu, J. 2001. Bacterial artificial chromosome (BAC) libraries constructed from the genetic standard of upland cottons [abstract]. Plant and Animal Genome IX Conference. Paper No. P104.
An Overview of USDA-ARS Cotton Genome Research at College Station, Texas. - (Abstract Only)
Yu, J., Kohel, R.J. 2001. An overview of USDA-ARS cotton genome research at College Station, Texas [abstract]. Plant and Animal Genome IX Conference. Paper No. W62.
Fine-Mapping of the Glandless Gene in Cotton - (Abstract Only)
Decanini, L.I., Kohel, R.J., Yu, J. 2001. Fine-mapping of the glandless gene in cotton [abstract]. Plant and Animal Genome IX Conference. Paper No. P631.
An Overview of USDA-ARS Cotton Genome Research at College Station, Texas - (Abstract Only) - (06-Dec-00)
Molecular Characterizatoin of Gossypium Germplasm - (Abstract Only) - (06-Dec-00)
Evaluation of Cotton Fiber Quality Qtls for Molecular Breeding - (Proceedings)
Yu, J., Kohel, R.J., Zhang, T. 2001. Evaluation of cotton fiber quality QTLs for molecular breeding. In: Proceedings of the Genetic Control of Cotton Fiber and Seed Quality Workshop, December 5-6, 2000, San Antonio, Texas. p. 175-180.
Cotton Germplasm Resources for Improving Fiber Quality and Molecular To0ls for Evaluation - (Proceedings)
KOHEL, R.J., YU, J., PERCIVAL, JR., A.E., DONG, J., ZHANG, H. COTTON GERMPLASM RESOURCES FOR IMPROVING FIBER QUALITY AND MOLECULAR TOOLS FOR EVALUATION. PROCEEDINGS OF GENETIC CONTROL OF COTTON FIBER AND SEED QUALITY WORKSHOP. 2000. P. 175-180.
Cottonseed Quality and Creation of Glanding Plants with Glandless Seed - (Proceedings)
KOHEL, R.J., YU, J., DECANINI, L.I., DONG, J., ZHANG, H. COTTONSEED QUALITY AND CREATION OF GLANDING PLANTS WITH GLANDLESS SEED. PROCEEDINGS OF GENETIC CONTROL OF COTTON FIBER AND SEED QUALITY WORKSHOP. 2000. P. 271-277.
Fine-Mapping of the Glandless Gene in Cotton - (Abstract Only) - (06-Dec-00)
Molecular Tagging of 1 Mafor Qtl for Fiber Strength in Upland Cotton - (Abstract Only) - (06-Dec-00)
Bacterial Artificial Chromosome(bac)libraries Constructed from the Genetic Standard of Upland Cotton - (Abstract Only) - (06-Dec-00)
New Genomic Tools for Cotton Improvement - (Abstract Only)
Yu, J., Kohel, R.J., Dong, J., Zhang, H. 2001. New genomic tools for cotton improvement [abstract]. Proceedings of Beltwide Cotton Conferences. p. 1415.
Applications of Larg-Insert DNA Libraries in Cotton Genomics - (Abstract Only) - (02-Oct-00)
Identification of Genomic Regions That Affect Grain Mould Incidence and Other Traits of Agronomic Importance in Sorghum - (Peer Reviewed Journal)
Klein, R.R., Rodriguez-Herrera, R., Schlueter, J.A., Klein, P.E., Yu, J., Rooney, W.L. 2001. Identification of genomic regions that affect grain mould incidence and other traits of agronomic importance in sorghum. Journal of Theoretical and Applied Genetics. 102:307-319.
Linkage Analysis of Transgenes Inserted into Cotton Via Agrobacterium Tumefaciens Transformation - (Peer Reviewed Journal) - (01-Feb-00)
Current Status of the Cotton Db, a Genome Database for Gossypium Spp - (Abstract Only)
Kohel, R.J., Yu, J., Gupta, P. 2000. Current status of the CottonDB, a genome database for Gossypium spp [abstract]. Plant and Animal Genome VIII Conference. Paper No. W74.
Isolation and Characterization of Disease Resistance (R) Genes in Cotton - (Abstract Only) - (12-Jan-00)
Construction of a Cotton Bac Library and Its Application to Gene Isolation - (Abstract Only)
Yu, J., Kohel, R.J., Zhang, H., Dong, J., Decanini, L. 2000. Construction of a cotton BAC library and its application to gene isolation [abstract]. Plant and Animal Genome VIII Conference. Paper No. P146.
Linkage Analysis of Transgenes Inserted into Cotton Via Agrobacterium Tumefaciens Transformation - (Peer Reviewed Journal) - (01-Jan-00)
Toward Positional Cloning of a Major Glandless Gene in Cotton - (Abstract Only)
YU, J., KOHEL, R.J., DONG, J., DECANINI, L.I. TOWARD POSITIONAL CLONING OF A MAJOR GLANDLESS GENE IN COTTON. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 2000. V. 1. P. 516-517.
Construction of a Cotton Bac Library and Its Applications to Gene Isolation - (Abstract Only) - (06-Dec-99)
Current Status of the Cottondb, a Genome Database for Gossypium Spp - (Abstract Only) - (06-Dec-99)
Molecular Mapping of a Major Gene for Glandless Cottonseed - (Abstract Only)
YU, J., KOHEL, R.J. MOLECULAR MAPPING OF A MAJOR GENE FOR GLANDLESS COTTONSEED. AMERICAN SOCIETY OF AGRONOMY MEETING. 1999. ABSTRACT P. 155.
Cotton Genomics: a Review - (Other) - (01-Jun-99)
Cotton Genome Database - (Abstract Only) - (01-Apr-99)
Localization and Characterization of Genes Controlling Fiber Quality Properties in Cotton Genomes (G.BARBADENSE and G.HIRSUTUM) - (Abstract Only)
YU, J., KOHEL, R.J., PARK, Y., LAZO, G.R. LOCALIZATION AND CHARACTERIZATION OF GENES CONTROLLING FIBER QUALITY PROPERTIES IN COTTON GENOMES (G.BARBADENSE AND G.HIRSUTUM). PLANT AND ANIMAL GENOME CONFERENCE. 1999. ABSTRACT P. 296.
Cotton Genome Mapping and Applications - (Abstract Only)
YU, J., KOHEL, R.J. COTTON GENOME MAPPING AND APPLICATIONS. PLANT AND ANIMAL GENOME CONFERENCE. 1999. ABSTRACT P. 60.
Update of the Cotton Genome Mapping - (Abstract Only)
Yu, J., Kohel, R.J. 1999. Update of the cotton genome mapping [abstract]. Proceedings of Beltwide Cotton Conferences. 1:439.
Cotton Genome Mapping and Cotton Genome Database - (Abstract Only)
YU, J., KOHEL, R.J. COTTON GENOME MAPPING AND COTTON GENOME DATABASE. PLANT AND ANIMAL GENOME CONFERENCE. 1998. ABSTRACT P. 75.
Molecular Mapping of the Cotton Genome: Qtl Analysis of Fiber Quality Characteristics - (Abstract Only)
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY CHARACTERISTICS. PLANT AND ANIMAL GENOME CONFERENCE. 1998. ABSTRACT P. 352.
Molecular Mapping of the Cotton Genome: Qtl Analysis of Fiber Quality Properties - (Abstract Only)
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME: QTL ANALYSIS OF FIBER QUALITY PROPERTIES. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1998. V. 1. P. 485.
Molecular Mapping of the Cotton Genome - (Abstract Only) - (01-Oct-97)
Mapping Cotton Genome with Molecular Markers - (Proceedings) - (05-Jan-97)
Mapping Cotton Genome with Molecular Markers - (Proceedings)
YU, J., PARK, Y., LAZO, G.R., KOHEL, R.J. MAPPING COTTON GENOME WITH MOLECULAR MARKERS. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1997. P. 447.
Aflp Mapping in Cotton - (Abstract Only)
Reddy, A., Haisler, R.M., Yu, J., Kohel, R.J. 1997. AFLP mapping in cotton [abstract]. Plant and Animal Genome V Conference. Paper No. P80.
Qtl Analysis of Fiber Strength in Cotton - (Abstract Only) - (01-Oct-96)
Molecular Mapping of Monogenic Traits in Cotton - (Abstract Only) - (01-Oct-96)
Development of Amplified Fragment Length Polymorphic Markers in Cotton - (Abstract Only)
Reddy, A.S., Haisler, R.M., Weller, J.W., Yu, J., Kohel, R.J. 1996. Development of amplified fragment length polymorphic markers in cotton [abstract]. Plant Genome IV Conference. Paper No. P74.
Molecular Mapping of the Cotton Genome and Its Applications to Cotton Improvement - (Abstract Only)
YU, J., PARK, Y., LAZO, G.R., WOLFF, N.C., KOHEL, R.J. MOLECULAR MAPPING OF THE COTTON GENOME AND ITS APPLICATIONS TO COTTON IMPROVEMENT. PROCEEDINGS OF BELTWIDE COTTON CONFERENCES. 1996. V. 1. ABSTRACT P. 636.
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