Robins, J.G., Jensen, K.B., Jones, T.A., Waldron, B.L., Peel, M., Rigby, C.W., Vogel, K.P., Mitchell, R., Palazzo, A.J., Cary, T.J. 2013. Stand establishment and persistence of perennial cool-season grasses in the Intermountain West and Central and Northern Great Plains. Rangeland Ecology and Management. 66:181-190.
Johnson, D.A., Bushman, B.S., Jones, T.A., Connors, K.J. 2012. Effect of seed scarification and seeding depth on greenhouse seedling emergence in western prairie clover, Searls prairie clover, and Basalt milkvetch. Society for Range Management Meeting Abstracts.
Mott, I.W., Larson, S.R., Jones, T.A., Robins, J.G., Jensen, K.B., Peel, M. 2011. A molecular genetic linkage map identifying the St and H sub-genomes of Elymus wheatgrass (Poaceae: Triticeae). Genome. 54:819-828.
Culumber, C.M., Larson, S.R., Jensen, K.B., Jones, T.A. 2011. Genetic differentiation and admixture among Eurasian and North American Leymus (Triticeae) wildryes detected using chloroplast DNA sequences and AFLP profiles. Plant Systematics and Evolution. 294:207-225.
Hardegree, S.P., Cho, J., Roundy, B., Moffet, C., Jones, T.A., James, J.J., Shaw, N., Cox, R. 2011. Hydrothermal indices for classification of seedbed microclimate. In: Abstracts of the 64th Annual Meeting, Society for Range Management, Billings, MT, Feb 6-10, 2011 (CD-ROM Abstract).
Mukherjee, J.R., Jones, T.A., Adler, P.B., Monaco, T.A. 2011. Drought tolerance in two perennial bunchgrasses used for restoration in the Intermountain West, U.S.A. Plant Ecology. 212:461-470.
Hardegree, S.P., T.A. Jones, B.A. Roundy, N.L. Shaw and T.A. Monaco. 2011. Assessment of range planting as a conservation practice. Chapter 4, In: Briske, D.D., editor. Conservation Benefits of Rangeland Practices: Assessment, Recommendations, and Knowledge Gaps. Lawrence, KS: Allen Press. p. 171-212.
Jones, T.A., Winslow, S.R., Parr, S.D., Memmott, K.L. 2010. Notice of release of White River germplasm Indian ricegrass. Native Plant Journal. 11:133-136.
Parsons, M.C., Jones, T.A., Larson, S.R., Monaco, T.A., Mott, I.W. 2010. Adaptive Zones Based on Phenotypic Data for a Newly Recognized Subspecies of Bottlebrush Squirreltail. Meeting Abstract.
Jensen, K.B., Waldron, B.L., Peel, M., Robins, J.G., Jones, T.A. 2010. New Range Plants, Their Adaptations and Uses. Meeting Proceedings in 32nd Annual Range and Livestock Workshops, Arizona/Utah. April 6th, Kanab, UT and April 7th, Hurricane, UT. 2010. p. 34-40.
Jones, T.A., Robins, J.G. 2010. Appropriate use of genetic manipulation for the development of restoration plant materials. Progress in Botany. 72:249-264.
Parsons, M.C., Jones, T.A., Monaco, T.A. 2010. Genetic variation for adaptive traits in Elymus elymoides ssp. brevifolius Race C in the Northern Intermountain West, USA. Restoration Ecology. 19:460-469.
Mukherjee, J.R., Jones, T.A., Adler, P.B., Monaco, T.A. 2010. Drought tolerance in two perennial bunchgrasses used for restoration in the Intermountain West, USA. Plant Ecology.
Hardegree, S.P., Moffet, C.A., Roundy, B.A., Jones, T.A., Novak, S.J., Clark, P., Pierson Jr, F.B., Flerchinger, G.N. 2010. A comparision of cumulative-germination response of cheatgrass (Bromus Tectorum L.) and five perennial bunchgrass species to simulated field-temperature regimes. Environmental and Experimental Botany. 69:321-327.
Mackown, C.T., Jones, T.A., Johnson, D.A., Monaco, T.A., Redinbaugh, M.G. 2009. Nitrogen uptake by perennial and invasive annual grass seedlings: Nitrogen form effects. Soil Science Society of America Journal. 73:1864-1870.
Larson, S.R., Bushman, B.S., Mott, I.W., Wang, R., Jensen, K.B., Robins, J.G., Jones, T.A. 2009. USDA-ARS gene, genomic, and trait discovery research in perennial triticeae grasses. International Triticeae Symposium Proceedings, "6th International Triticeae Symposium" May 30 - June 5, 2009. in Kyoto, Japan.
Jones, T.A., Monaco, T.A. 2009. A Role for Assisted Evolution in Designing Native Plant Materials for Domesticated Landscapes. Frontiers in Ecology and the Environment. 7:541-547.
Larson, S.R., Jensen, K.B., Jones, T.A., Robins, J.G. 2008. Identification of Species, Genes, and Trait Appropriate for Low-Input Biomass Production in Western North America. ASA-CSSA-SSSA Annual Meeting Abstracts.
Hardegree, S.P., B.A. Roundy, N.L. Shaw., C.A. Moffet, T.A. Monaco, T.A. Jones and E.F. Redente. 2009. Assessment of range planting as a conservation practice. In: Abstracts of the 62nd Annual Meeting, Society for Range Management, Albuquerque, NM, Feb 8-12, 2009 (CD-ROM Abstract).
Jones, T.A. 2008. Wildland Collection, Population Development, and Genetic Manipulation of Native Rangeland Grasses in the Intermountain West USA. International Rangeland Congress.
Jones, T.A., Larson, S.R., Wilson, B.L. 2008. Genetic Differentiation and Hybridization Among Festuca Idahoensis, F. Roemeri, and F. Ovina Detected From AFLP, ITS, and Chloroplast DNA. Botany 86:422-434
Hardegree, S.P., B.A. Roundy, T.A. Jones, F.B. Pierson AND P.E. Clark. 2008. A comparision of cumulative-germination response of cheatgrass (Bromus tectorum) and four perennial bunchgrass species to simulated field-temperature regimes. In: Abstracts of the 61st Annual Meeting, Society for Range Management, Louisville, KY, January 26-31, 2008. (CD-ROM Abstract)
Johnson, D.A., Bhattarai, K., Jones, T.A., Bushman, B.S., Gardner, D.R. 2007. North American Legumes for Rangeland Restoration, Conservation, and Forage Production in the Western U.S.. Society for Range Management Meeting Abstracts.
Jones, T.A., Redinbaugh, M.G., Zhang, Y., Larson, S.R., Dow, B.D. 2007. Genetic variation and distribution of the highly dormant jumbo seed morph of indian ricegrass. Crop Science.
Allcock, K., Nowak, R., Blank, R.R., Jones, T.A., Monaco, T.A., Chambers, J., Tausch, R., Doescher, P., Saytal, V., Tanaka, J., Ogle, D., St John, L., Pellant, M., Pyke, D.A., Schupp, E.W., Call, C.A. 2006. Integrating Weed Management and Restoration on Western Rangelands. Ecological Restoration. 24:199.
Jones, T.A., Larson, S.R. 2005. Development of Native Western North American Triticeae Germplasm in a Restoration Context. Czech Journal of Genetics and Plant Breeding 41(Special Issue):108-111
Faeth, S.H., Gardner, D.R., Cimmamon, J.H., Jani, A., Hamilton, C.E., Wittlinger, S.K., Jones, T.A. 2006. Temporal and spatial variation in alkaloid levels in achnatherum robustum, a native grass infected with the endophyte neotyphodium. Journal of Chemical Ecology.
Johnson, D.A., Bhattarai, K., Jones, T.A., Gardner, D.R., Cane, J.H. 2005. Basalt milkvetch: a promising north american legume for rangeland rehabilitation, conservation, and forage production. Society for Range Management Meeting Abstracts.
Johnson, D.A., Jones, T.A., Cane, J.H., Gardner, D.R., Peel, M. 2005. Basalt milkvetch and globemallows: north american forbs for rehabilitation, conservation, and forage production. Society for Range Management Meeting Abstracts.
Larson, S.R., Jones, T.A., Jensen, K.B. 2004. Population structure in pseudoroegneria spicata (poaceae: triticeae) modeled by bayesian clustering of aflp genotypes. American Journal of Botany.
Jones, T. A., D. C. Nielson, S. R. Larson, D. A. Johnson, T. A. Monaco, S. L. Caicco, D. G. Ogle, S. A. Young, and J. R. Carlson. 2004. Registration of Toe Jam Creek bottlebrush squirreltail germplasm. Crop Sci. 44:1880-1881.
Jones, T. A., D. C. Nielson, S. R. Larson, D. A. Johnson, T. A. Monaco, S. L. Caicco, D. G. Ogle, and S. A. Young. 2004. Registration of Fish Creek bottlebrush squirreltail germplasm. Crop Sci. 44:1879-1880.
Monaco, T.A., Mackown, C.T., Johnson, D.A., Jones, T.A., Norton, J.M., Norton, J.B., Redinbaugh, M.G. 2003. Effects of nitrogen form and availability on seed germination and early seedling growth in invasive annual and desirable perennial grasses. Journal of Range Management. 56:646-653.
Wu, X., S. R. Larson, Z. Hu, A. Palazzo, T. A. Jones, R. R.-C. Wang, K. B. Jensen, and N. J. Chatterton. Molecular genetic linkage maps for allotetraploid Leymus wildryes (Gramineae: Triticeae). Genome 46:627-646. 2003.
MACKOWN, C.T., JONES, T.A., JOHNSON, D.A., REDINBAUGH, M.G. SEEDLING N UPTAKE BY DESIRABLE PERENNIAL AND INVASIVE ANNUAL COOL-SEASON GRASSES: EFFECTS OF N FORM. AMERICAN SOCIETY OF AGRONOMY MEETINGS. 2002. Abstract No. c03-mackown133709-o. CD-ROM.
HARDEGREE, STUART P., JONES, THOMAS A., and VAN VACTOR, STEVEN S., Variability in Thermal Response of Primed and Non-primed Seeds of Squirreltail (Elymus elymoides (Raf.) Swezey and Elymus multisetus (J.G. Smith) M.E. Jones). Annals of Botany Company 2002, p. 311-319.
MACKOWN, C.T., JONES, B., JONES, T.A. 2001. COOL-SEASON GRASS ESTABLISHMENT: EFFECTS OF N ON GERMINATION AND GROWTH TRAITS OF DESIRABLE PERENNIAL VS WEEDY ANNUAL SEEDLINGS. RANGELAND WIRE, OKLAHOMA SECTION, SOCIETY FOR RANGE MANAGMENT. Volume(10)p. 2-3.