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United States Department of Agriculture

Agricultural Research Service

Related Topics

Yulin Jia
Dale Bumpers National Rice Research Center
Plant Pathology

Phone: (870) 672-6107
Fax: (870) 673-7581

2890 HWY 130 E
STUTTGART , AR 72160

Projects
Using Genetic Approaches to Reduce Crop Losses in Rice Due to Biotic and Abiotic Stress
Appropriated (D)
  Accession Number: 425080
Development of Molecular Markers Linked to Rice Blast Resistance Gene Pi9
Nonfunded Cooperative Agreement (N)
  Accession Number: 428093

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Registration of 42 blast resistant medium grain rice genetic stocks with suitable agronomic, yield, milling yield, and grain characteristics -
Jia, Y., Berger, G., Mcclung, A.M. 2016. Registration of 42 blast resistant medium grain rice genetic stocks with suitable agronomic, yield, milling yield, and grain characteristics. Journal of Plant Registrations. doi:10.3198/jpr2016.03.0015crgs.
Coevolutionary dynamics of rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita 1 Reprint Icon -
Jia, Y., Zhou, E., Lee, S., Bianco, T.A. 2016. Coevolutionary dynamics of rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita 1. Phytopathology. 106(7):676-683. doi: org/10.1094/PHYTO-02-16-0057-RVW.
Identification of a Pi9 containing rice germplasm with a newly developed robust marker -
Scheuermann, K.K., Jia, Y. 2016. Identification of a Pi9 containing rice germplasm with a newly developed robust marker. Phytopathology. Phytopathology 106:871-876.
Rice fissure resistance QTLs from ‘Saber’ complement those from ‘Cypress’ -
Field evaluation of potential weed-suppressive traits in an indica x tropical japonica mapping population -
First report of multiple races of the rice blast fungus Magnaporthe oryzae in Puerto Rico -
Jia, Y., McClung, A.M. 2016. First report of multiple races of the rice blast fungus Magnaporthe oryzae in Puerto Rico. Plant Disease. doi: 10.1094/PDIS-12-15-1391-PDN.
Marker development for rice blast resistance gene Pi66(t) and application in USDA rice mini-core collection Reprint Icon -
Liu, Y., Jia, Y., Gealy, D.R., Goad, D.M., Caicedo, A.L., Oksen, K.M. 2016. Marker development for rice blast resistance gene Pi66(t) and application in USDA rice mini-core collection. Plant Science. 56:1-8. doi: 10.2135/cropsci2015.07.0422.
QTLs for early tiller production and relationships with rapid seedling growth and increased panicle number in rice -
Pinson, S.R., Jia, Y. 2016. QTLs for early tiller production and relationships with rapid seedling growth and increased panicle number in rice. Crop Science. 56:505-519. doi: 10.2135/cropsci2014.09.0667.
Characterization of field isolates of Magnaporthe oryzae with mating type, DNA fingerprinting, and pathogenicity assays Reprint Icon -
Li, J., Li, L., Jia, Y., Wang, Q., Fukuta, Y., Li, C. 2016. Characterization of field isolates of Magnaporthe oryzae with mating type, DNA fingerprinting, and pathogenicity assays. Plant Disease. 100(2):298-303. doi.org/10.1094/PDIS-06-15-0660-RE.
Genome-wide association of rice blast disease resistance and yield-related components of rice -
Wang, X., Jia, M.H., Ghai, P., Lee, F.N., Jia, Y. 2015. Genome-wide association of rice blast disease resistance and yield-related components of rice. Molecular Plant-Microbe Interactions. 28(12):1383-1392. doi.org/10.1094/MPMI-06-15-0131-R.
Confirming and Identifying New Loci for Rice Blast Disease Resistance using Magnaporthe oryzae Field Isolates in the US -
Xing, J., Jia, M.H., Correll, J.C., Yuan, L., Deng, H., Jia, Y. 2015. Confirming and Identifying New Loci for Rice Blast Disease Resistance using Magnaporthe oryzae Field Isolates in the US. Crop Science. 55:2620-2627. doi: 10.2135/cropsci2015.02.0077.
More than one way to evolve a weed: parallel evolution of U.S. weedy rice through independent genetic mechanisms -
Qi, X., Liu, Y., Vigueira, C., Young, N., Caicedo, A.L., Jia, Y., Gealy, D.R., Olsen, K.M. 2015. More than one way to evolve a weed: parallel evolution of U.S. weedy rice through independent genetic mechanisms. Molecular Ecology. 24:3329–3344. DOI: 10.1111/mec.13256.
Quick survey of avirulence genes in field isolates of Magnaporthe oryzae in the past 60 years -
Wang, X., Bianco, T.A., Lin, M.J., Wamishe, Y., Jia, Y. 2015. Quick survey of avirulence genes in field isolates of Magnaporthe oryzae in the past 60 years. APS annual meeting, Pasadena, California, August 1-5, 2015. American Phytopathological Society. p. 312.
Development of molecular markers for breeding for disease resistant crops -
Jia, Y., Liu, Y., Wang, X., Scheuermann, K., Jia, M.H., Mcclung, A.M. 2015. Development of molecular markers for breeding for disease resistant crops. Permanent identification: urn:nbn:de:0294-sp-2015-1-2. Proceedings of XVIII International Plant Protection Congress. August 24-28, 2015. Berlin, Germany. OBT3, Page 88.
Characterization of rice blast resistance genes in rice germplasm with monogenic lines and pathogenicity assays Reprint Icon -
Wang, J., Correll, J.C., Jia, Y. 2015. Characterization of rice blast resistance genes in rice germplasm with monogenic lines and pathogenicity assays. Crop Protection. 72:132-138.
QTLs analysis for resistance to blast disease in US weedy rice Reprint Icon -
Liu, Y., Qi, X., Gealy, D.R., Olsen, K.M., Caicedo, A.L., Jia, Y. 2015. QTLs analysis for resistance to blast disease in US weedy rice. Molecular Plant-Microbe Interactions. p. 1-36. doi.org/10.1094/MPMI-12-14-0386-R.
Growth characteristics of a weed-suppressive indica x non-suppressive tropical japonica rice mapping population -
Gealy, D.R., Jia, Y., Pinson, S.R. 2015. Growth characteristics of a weed-suppressive indica x non-suppressive tropical japonica rice mapping population. Weed Science Society of America Meeting Abstracts. 55(263). Available: http://wssaabstracts.com/public/30/proceedings.html
Characterization of resistance genes to rice blast fungus Magnaporthe oryzae in a “Green Revolution” rice variety Reprint Icon -
Liu, Y., Qi, X., Young, N.D., Olsen, K.M., Caicedo, A.L., Jia, Y. 2015. Characterization of resistance genes to rice blast fungus magnaporthe oryzae in a “Green Revolution” rice variety. Molecular Breeding. 35:52. DOI 10.1007/s11032-015-0256-y.
Statistical inference of selection and divergence of rice blast resistance gene Pi-ta Reprint Icon -
Amei, A., Lee, S., Mysore, K.S., Jia, Y. 2014. Statistical inference of selection and divergence of rice blast resistance gene Pi-ta. Genes, Genomes, Genetics. 4:2425-2432.
Purification, storage, and pathogenicity assay of rice false smut fungus under controlled environmental conditions -
Jia, Y., El-Shafey, R., Zhang, Z. 2014. Purification, storage, and pathogenicity assay of rice false smut fungus under controlled environmental conditions. American Phytopathological Society Annual Meeting. Published on-line. p 53.
Insights into molecular mechanism of blast resistance in weedy rice -
Liu, Y., Jia, Y., Qi, X., Olsen, K.M., Caicedo, A.L., Gealy, D.R. 2014. Insights into molecular mechanism of blast resistance in weedy rice. Proc. APS-CPS Joint Meet., Minneapolis, MN, pp.67-70. August 9-13, 2014.
Characterizing virulence phenotypes among U.S. isolates of Magnaporthe oryzae using IRRI NILs, US germplasm, and NERICA lines -
Rotich, F., Feng, C., Jia, Y., Groth, D., Correll, J. 2014. Characterizing virulence phenotypes among U.S. isolates of Magnaporthe oryzae using IRRI NILs, US germplasm, and NERICA lines. In BR Wells Studies- series 609 2013. Edited by Norman, RJ., Molderhauer, KAK, University of Arkansas. Pages 109-115.
Identification of major blast resistance genes in the southern US -
Wang, X., Wamishe, Y., Bianco, T.A., Lin, M.J., Valent, B., Jia, Y. 2014. Identification of major blast resistance genes in the southern US. American Phytopathological Society Annual Meeting, August 9-13, 2014, Minneapolis, MN. O68.
Sequence variation and recognition specificity of the avirulence gene AvrPiz-t in Magnaporthe oryzae field populations Reprint Icon -
Chen, C., Chen, M., Hu, J., Zhang, W., Zhong, Z., Jia, Y., Allaux, L., Fournier, E., Tharreau, D., Wang, G., Wang, Z., Shen, W., Lu, G., Wang, B., Mitchell, T.K. 2014. Sequence variation and recognition specificity of the avirulence gene AvrPiz-t in Magnaporthe oryzae field populations. Fungal Genomics and Biology. 4:113. doi:10.4172/2165-8056.1000113.
Registration of a rice gene mapping population of Lemont X Jasmine 85 recombinant inbred lines Reprint Icon -
Jia, Y., Liu, G., Jia, M.H., McClung, A.M. 2014. Registration of a rice gene mapping population of Lemont X Jasmine 85 recombinant inbred lines. Journal of Plant Registrations. 9:128-132.
The evolution of flowering strategies in US weedy rice Reprint Icon -
Thurber, C.S., Reagon, M., Olsen, K.M., Jia, Y., Caicedo, A.L. 2014. The evolution of flowering strategies in US weedy rice. American Journal of Botany. 101(10):1737-1747. doi:10.3732/ajb.1400154.
An expedited method to isolate DNA for PCR from Magnaporthe oryzae stored on filter paper Reprint Icon -
Jia, Y., Wamishe, Y.A., Zhou, B. 2014. An expedited method to isolate DNA for PCR from Magnaporthe oryzae stored on filter paper. The Crop Journal. 2(5):267-271.
Molecular detection of Xanthomonas oryzae pv. oryzae, Xanthomonas oryzae pv. oryzicola, and Burkholderia glumae in infected rice seeds and leaves Reprint Icon -
Lu, W., Pan, L., Zhao, H., Jia, Y., Wang, Y., Yu, X., Wang, X. 2014. Molecular detection of Xanthomonas oryzae pv. oryzae, Xanthomonas oryzae pv. oryzicola, and Burkholderia glumae in infected rice seeds and leaves. The Crop Journal. 2:398-406. doi: 10.1016/j.cj.2014.06.005.
Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance -
Wamishe, Y., Jia, Y., Kelsey, S., Belmar, S., Rasheed, M.D. 2014. Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance. Arkansas Agricultural Experiment Station, B.R. Wells Rice Research Studies-20012, eds. Norman, R.J., and Moldenhauer, K., series 609:103-108. (http://arkansasagnews.uark.edu/609-13.pdf).
Natural variation of rice blast resistance gene Pi-d2 Reprint Icon -
Li, J., Sun, Y., Liu, H., Wang, Y., Jia, Y., Xu, M. 2015. Natural variation of rice blast resistance gene Pi-d2. Genetics and Molecular Research. 14(1):1235-1249. doi.org/10.4238/2015.February.13.2.
Identification of candidate genes associated with positive and negative heterosis in rice Reprint Icon -
Venu, R.C., Ma, J., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M.V., Moldenhauer, K., McClung, A.M., Meyers, B.C., Wang, G. 2014. Identification of candidate genes associated with positive and negative heterosis in rice. PLoS One. 9(4):e95178.
Exploring optimization of weed suppression, yield, and biotic stress tolerance in an allelopathic X non-allelopathic rice mapping population -
Gealy, D.R., Jia, Y., Pinson, S.R. 2014. Exploring optimization of weed suppression, yield, and biotic stress tolerance in an allelopathic X non-allelopathic rice mapping population. In: Proceedings of the 7th World Congress on Allelopathy. Vigo, Spain. International Allelopathy Society. International Allelopathy Congress. p. 224.
Characterization of rice blast resistance gene Pi61(t) in rice germplasm Reprint Icon -
Ma, J., Jia, M.H., Jia, Y. 2014. Characterization of rice blast resistance gene Pi61(t) in rice germplasm. Plant Disease. 98(9):1200-1204.
Development of a pathology toolbox for genetic and breeding for resistance to rice sheath blight disease -
Jia, Y. 2014. Development of a pathology toolbox for genetic and breeding for resistance to rice sheath blight disease. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.86. Feb 18-21, 2014. CDROM.
Implication of co-evolutionary dynamics for genetic resistance to rice blast fungus -
Jia, Y. 2014. Implication of co-evolutionary dynamics for genetic resistance to rice blast fungus. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.39. Feb 18-21, 2014. CDROM.
Promises and challenges of genomics for rice pathology -
Jia, Y., Lin, M.J., Bianco, T.A. 2014. Promises and challenges of genomics for rice pathology. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.94. Feb 18-21, 2014. CDROM.
Identification of candidate genes associated with heterosis in rice -
Venu, R.C., Ma, J., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M.V., Moldenhauer, K., McClung, A.M., Meyers, B.C., Wang, G. 2014. Identification of candidate genes associated with heterosis in rice. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.53. Feb 18-21, 2014. CDROM.
Elucidation of molecular dynamics of invasive species of rice -
Yan, L., Qin, X., Vigueira, C., Jia, M.H., Jia, Y., Gealy, D.R., Olsen, K., Caicedo, A., Burgos, N. 2014. Elucidation of molecular dynamics of invasive species of rice. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.94. Feb 18-21, 2014. CDROM.
Multistate evaluation of Brassica cover crop, biocontrol agent, and fungicide for integrated management of sheath blight -
Zhou, X., Liu, G., Anders, M.M., Maxwell, H., Allen, T., Kloepper, J.W., Reddy, M.S., Jia, Y., Lu, S., Jo, Y., Way, M. 2014. Multistate evaluation of Brassica cover crop, biocontrol agent, and fungicide for integrated management of sheath blight. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.79. Feb 18-21, 2014. CDROM.
Disease reactions of IRRI near-isogenic rice lines to U.S. isolates of Magnaporthe oryzae -
Feng, C., Rotich, F., Jia, Y., Correll, J. 2014. Disease reactions of IRRI near-isogenic rice lines to U.S. isolates of Magnaporthe oryzae. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, p.89. Feb 18-21, 2014. CDROM.
Identification of genetic loci underlying the kernel fissure-resistance exhibited by 'cypress' and 'saber' -
1. Pinson, S.R.M., J. Gibbons, and Y. Jia. 2014. Identification of genetic loci underlying the kernel fissure-resistance exhibited by 'Cypress' and 'Saber'. Proc. 35th Rice Tech. Work. Group Meet., New Orleans, LA, pp. 58-59. Feb. 18-21, 2014. CDROM.
Effectiveness and durability of the rice Pi-ta gene in Yunnan province of China Reprint Icon -
Li, J., Lu, L., Jia, Y., Li, C. 2014. Effectiveness and durability of the rice Pi-ta gene in Yunnan province of China. Phytopathology. 104(7):762-768.
Tagging quantitative trait loci for heading date and plant height in important breeding parents of rice (Oryza sativa) Reprint Icon -
Lee, S., Jia, M.H., Jia, Y., Liu, G. 2014. Tagging quantitative trait loci for heading date and plant height in important breeding parents of rice (Oryza sativa). Euphytica. 197(2):191-200. DOI 10.1007/s10681-013-1051-7.
Induction of avirulence by AVR-Pita1 in virulent U.S. field isolates of Magnaporthe oryzae -
Dai, Y., Winston, E., Correll, J.C., Jia, Y. 2014. Induction of avirulence by AVR-Pita1 in virulent U.S. field isolates of Magnaporthe oryzae. The Crop Journal. 2(1):1-9.
Genetic variation and evolution of the Pit blast resistance locus in rice Reprint Icon -
Li, J., Sun, Y., Liu, H., Wang, Y., Jia, Y., Xu, M. 2013. Genetic variation and evolution of the Pit blast resistance locus in rice. Genetic Resources and Crop Evolution. 61:473-489. DOI 10.1007/s10722-013-0051-8.
Current advances on genetic resistance to rice blast disease -
Wang, X., Lee, S., Wang, J., Ma, J., Bianco, T.A., Jia, Y. 2014. Current advances on genetic resistance to rice blast disease. Book Chapter. pgs. 195-217. DOI: 10.5772/56824. Publisher: In Tech http://www.intechopen.com. Editor: Wengui Yan.
Brassica cover cropping for management of sheath blight of rice -
Zhou, X., Liu, G., Handiseni, M., Anders, M.M., Jia, Y. 2013. Brassica cover cropping for management of sheath blight of rice. Rice Field Day Abstract. Beaumont, Texas Rice Field Day 2013. Special Section: 17.
Development and characterization of rice mutants for functional genomic studies and breeding -
Wang, Z., Jia, Y. 2014. Development and characterization of rice mutants for functional genomic studies and breeding. In: Tomlekova, N.B., Kozgar, M.I., Wani, M.R., editors. Mutagenesis: Exploring Novel Genes and Pathways. Wageningen Academic Publishers. p. 307-322.
Three QTLs conferring resistance to kernel fissuring in rice (Oryza sativa L.) identified by selective genotyping in two tropical japonica populations -
Pinson, S.R., Jia, Y., Gibbons, J. 2013. Three QTLs conferring resistance to kernel fissuring in rice (Oryza sativa L.) identified by selective genotyping in two tropical japonica populations. Crop Science. 53:2434-2443.
Global efforts in managing rice blast disease -
Jia, Y. 2013. Global efforts in managing rice blast disease. American Phytopathological Society Abstracts. 112-S.
Characterizing virulence phenotypes among U.S. isolates of Pyricularia oryzae using IRRI NILs, U.S. germplasm, and NERICA lines Reprint Icon -
Rotich, F., Feng, C., Jia, Y., Correll, J. 2013. Characterizing virulence phenotypes among U.S. isolates of Pyricularia oryzae using IRRI NILs, U.S. germplasm, and NERICA lines. APS Annual Meeting. Aug. 10-14 Austin, TX Abstract #278.
PGPR and its combined use with fungicide for control of rice sheath blight in the southern U.S Reprint Icon -
Zhou, X., Liu, G., Anders, M.M., Maxwell, H., Allen, T., Kloepper, J.W., Reddy, M.S., Jia, Y., Lu, S., Jo, Y., Way, M. 2013. PGPR and its combined use with fungicide for control of rice sheath blight in the southern U.S. Rice Field Day Abstract. Beaumont, Texas Rice XIII (Special Section, Highlighting Research):17.
Analysis of rice PDR-like ABC transporter genes in sheath blight resistance -
Lee, S., Sing, P., Jia, M.H., Jia, Y. 2013. Analysis of rice PDR-like ABC transporter genes in sheath blight resistance. American Phytopathological Society Abstracts. 50-O.
Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance -
Wamishe, Y., Jia, Y., Kelsey, C., Belmar, S., Rasheed, M. 2014. Development of practical diagnostic methods for monitoring rice bacterial panicle blight disease and evaluation of rice germplasm for resistance. In BR Wells Studies- series 609 2013. Edited by Norman, RJ., Molderhauer, KAK, University of Arkansas. Arkansas Agricultural Experiment Station Research Series. Pages 103-108.
Deep transcriptome sequencing reveals the expression of key functional and regulatory genes involved in the abiotic stress signaling pathways in rice Reprint Icon -
Venu, R.A., Sreerekha, M., Nobuta, K., Madhav, S.M., Jia, Y., Meyers, B.C., Wang, G. 2013. Deep transcriptome sequencing reveals the expression of key functional and regulatory genes involved in the abiotic stress signaling pathways in rice. Journal of Plant Biology. 56:216-231.
Evaluation of brassica cover crop and PGPR strain for suppression of sheath blight of rice in Arkansas, 2012 -
Anders, M.M., Zhou, X., Jia, Y., Liu, G. 2013. Evaluation of brassica cover crop and PGPR strain for suppression of sheath blight of rice in Arkansas, 2012. Plant Disease Management Reports. 7: FC048 doi:10.1094/PDMR07.
Evolutionary insights into the origins of weediness in U.S. red rice -
Gealy, D.R., Liu, Y., Vigueira, C., Jia, Y., Caicedo, A., Burgos, N.R., Olsen, K. 2013. Evolutionary insights into the origins of weediness in U.S. red rice. Weed Science Society of America Meeting Abstracts. 53:96.
Molecular mapping of four blast resistance genes using recombinant inbred lines of 93-11 and nipponbare Reprint Icon -
Hongmei, Y., Jia, M.H., Jia, Y., Venus, R., Wang, Z., Sun, C., Wang, G. 2013. Molecular mapping of four blast resistance genes using recombinant inbred lines of 93-11 and nipponbare. Journal of Plant Biology. 56:91-97.
Construction of a yeast two hybrid library in a compatible interaction of rice with an AVR-Pita1 containing isolate -
Zhang, Z., Jia, Y., Wang, Y., Liu, F., Sun, G. 2013. Construction of a yeast two hybrid library in a compatible interaction of rice with an AVR-Pita1 containing isolate. Thirty-Fourth Rice Technical Working Group, Hot Springs, AR. Page 73.
PGPR: A novel strategy for the control of rice sheath blight disease -
Zhou, X., Kumar, V.K., Reddy, M.S., Kloepper, J.W., Jia, Y., Allen, T.W., Way, M.O. 2013. PGPR: A novel strategy for the control of rice sheath blight disease. Thirty-Fourth Rice Technical Working Group Meeting Proceedings, Hot Springs, AR, February 27-March 1, 2012. Page 81.
Identification of rice blast resistance genes using international monogenic differentials Reprint Icon -
Wang, J., Jia, Y., Wen, J., Liu, W., Liu, X., Li, L., Jiang, Z., Zhang, J., Guo, X., Ren, J. 2013. Identification of rice blast resistance genes using international monogenic differentials. Crop Protection. 45:109-116.
Analysis of genetic and molecular identity among field isolates of the rice blast fungus with an international differential system, rep-PCR and DNA sequencing Reprint Icon -
Xing, J., Jia, Y., Correll, J.C., Lee, F.N., Cartwright, R., Cao, M., Yuan, L. 2013. Analysis of genetic and molecular identity among field isolates of the rice blast fungus with an international differential system, rep-PCR and DNA sequencing. Plant Disease. 97:491-495.
Similar traits, different genes? Examining convergent evolution in related weedy rice populations Reprint Icon -
Thurber, C.S., Jia, M.H., Jia, Y., Caicedo, A. 2013. Similar traits, different genes? Examining convergent evolution in related weedy rice populations. Molecular Ecology. 22:685-698. doi: 10.1111/mec.12147.
Establishment and application of an efficient, economic, and rapid rice DNA extraction method -
Zhao, G., Jia, Y., Deren, C.W., Yan, Z., Jia, M.H., Dai, L. 2012. Establishment and application of an efficient, economic, and rapid rice DNA extraction method. Chinese Journal of Rice Science. 26(4):495-499.
Confirming QTLs and finding additional loci responsible for resistance to rice sheath blight disease Reprint Icon -
Liu, G., Jia, Y., McClung, A.M., Oard, J., Lee, F., Correll, J. 2013. Confirming QTLs and finding additional loci responsible for resistance to rice sheath blight disease. Plant Disease. 97:113-117.
Indica and Japonica crosses resulting in linkage block and recombination suppression on rice chromosome 12 Reprint Icon -
Jia, Y., Jia, M.H., Wang, Z., Liu, G. 2012. Indica and Japonica crosses resulting in linkage block and recombination suppression on rice chromosome 12. PLoS One. 7(8):Article e43066.
Transcriptome and methylome interactions in rice hybrids Reprint Icon -
Chodavarapu, R.K., Feng, S., Ding, B., Simon, S.A., Lopez, D., Jia, Y., Wang, G., Meyers, B.C., Jacobsen, S.E., Pellegrini, M. 2012. Transcriptome and methylome interactions in rice hybrids. Proceedings of the National Academy of Sciences. 109:30-36.
Pathological and Molecular Characterization of Rice Blast Pathogenicity Factor AVR-Pita 1 in Field Isolates -
Jia, Y., Correll, J.C., Lee, F.N. 2012. Pathological and Molecular Characterization of Rice Blast Pathogenicity Factor AVR-Pita 1 in Field Isolates. Annual International Plant & Animal Genome Conference. Page 53-72 in b.R. Wells Rice Research Studies 2011.
Pathological and molecular characterization of rice blast pathogenicity factor AVR-Pital in field isolates Reprint Icon -
Jia, Y., Correll, J.C., Lee, F.N. 2012. Pathological and molecular characterization of rice blast pathogenicity factor AVR-Pital in field isolates. Arkansas Agricultural Experiment Station Research Series. BR Wells Rice Research Studies 2011 pg. 53-72.
Natural variation and evolution of the avirulence genes in Magnaporthe oryzae -
Jia, Y., Zhang, Z., Xing, J., Wang, J., Correll, J.C., Cartwright, R. 2012. Natural Variation and Evolution of the Avirulence Genes in Magnaporthe Oryzae. American Phytopathological Society. published online.
Identification of blast resistance genes for managing rice blast disease -
Wang, J., Jia, Y., Wen, J., Liu, W., Ren, J. 2012. Identification of blast resistance genes for managing rice blast disease. American Phytopathological Society Annual Meeting. Providence, RI. p.579. August 4-8, 2012.
Identification of the rice blast resistance gene Pi-b in the national small grains collection Reprint Icon -
RoyChowdhury, M., Jia, Y., Jia, M.H., Fjellstrom, R.G., Cartwright, R. 2012. Identification of the rice blast resistance gene Pi-b in the national small grains collection. Phytopathology 102(7):700-706.
Putative fissure-resistance QTLs mapped to chromosomes 1 and 8 based on allelic frequency differences observed between fissure-resistant and fissure-susceptible progeny from two segregating populations -
Pinson, S.R., Gibbons, J., Jia, Y., Yeater, K.M. 2013. Putative fissure-resistance QTLs mapped to chromosomes 1 and 8 based on allelic frequency differences observed between fissure-resistant and fissure-susceptible progeny from two segregating populations. 35TH Rice Technical Working Group Meeting Proceedings, February 27, - March 1, 2012 Hot Springs, Arkansas. CDROM
Analysis of rice blast resistance in rice breeding parents from USA using molecular markers and pathogenicity assays -
Zhao, G., Yan, Z., Jia, Y., Deren, C.W., Dai, L. 2012. Analysis of rice blast resistance in rice breeding parents from USA using molecular markers and pathogenicity assays. Molecular Plant Breeding of China. 10:207-213.
Induction of avirulence in U.S. virulent field isolates of Magnaporthe oryzae by AVR-Pita 1 -
Dai, Y., Crowley, E.W., Correll, J.C., Jia, Y. 2014. Induction of avirulence in U.S. virulent field isolates of Magnaporthe oryzae by AVR-Pita 1. Poster presentation for International Plant & Animal Genome XX/ January 14-18, 2012, San Diego, CA.
Structure, Function, Interaction, Co-evolution of Rice Blast Resistance Genes -
Roychowdhury, M., Jia, Y., Cartwright, R.D. 2012. Structure, function, interaction, co-evolution of rice blast resistance genes. Acta Agronomica Sinica. 38: 381-393.
Understanding of evolutionary genomics of invasive species of rice -
Jia, Y., Gealy, D., Burgos, N., Olsen, K., and Caceido, A. 2012. Understanding of Evolutionary Genomics of Invasive Species of Rice. Page 46.
Characterization of genetic diversity of rice blast fungus in Arkansas field isolates -
Jia, Y., Xing, J., Crrell, J. Lee, FN. Cartwright, R., Cao, M., Yuan, L. 2012. Characterization of genetic diversity of rice blast fungus in Arkansas field isolates. Page 77.
Understanding rice heterosis using deep sequencing -
Venu, R., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M., Moldenhauer, K.A., Pellgrini, M., Jacobsen, S.E., Mcclung, A.M. 2012. Understanding rice heterosis using deep sequencing. Rice Technical Working Group Meeting Proceedings. Feb. 27 - Mar. 1, 2012. Hot Springs, AR. pg. 46-47..
Identification of expressed genes in the mapped QTLs for yield related traits in rice -
Venu, R., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M., Moldenhauer, K.A., Pellgrini, M., Jacobsen, S.E., Mcclung, A.M. 2012. Identification of expressed genes in the mapped QTLs for yield related traits in rice. Rice Technical Working Group Meeting Proceedings. Feb. 27 - Mar. 1, 2012. Hot Springs, AR. pg. 61.
Response to early generation selection for resistance to rice kernel fissuring -
Pinson, S.R., Jia, Y., Gibbons, J. 2013. Response to early generation selection for resistance to rice kernel fissuring. Crop Science. 52:1482-1492.
Genomic structure of weedy rice -
Hyma, K., Olsen, K., Jia, Y., Caicedo, A. 2012. Genomic structure of weedy rice. Annual International Plant & Animal Genome Conference. Abstract for conference.
Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA -
Lee, S., Jia, Y., Jia, M.H., Gealy, D.R., Olsen, K.M., Caicedo, A.L. 2011. Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA. PLoS One. 6(10):e26260. doi:10.1371/journal.pone.0026260.
Registration of a rice gene-mapping population consisting of 'TeQing'-into-'Lemont' backcross introgression lines -
Pinson, S.R., Liu, G., Jia, M.H., Jia, Y., Fjellstrom, R.G., Sharma, A., Wang, Y., Tabien, R.E., Li, Z. 2012. Registration of a rice gene-mapping population consisting of 'TeQing'-into-'Lemont' backcross introgression lines. Journal of Plant Registrations. 6(1):128-135. doi: 10.3198/jpr2011.02.0066crmp.
Registration of four rice germplasm lines with improved resistance to sheath blight and blast diseases Reprint Icon -
Jia, Y., Liu, G., Correa-Victoria, F.J., Mcclung, A.M., Oard, J.H., Bryant, R.J., Jia, M.H., Corell, J.C. 2012. Registration of four rice germplasm lines with improved resistance to sheath blight and blast diseases. Journal of Plant Registrations. 6(1):95-100.
Comparative analysis of putative pathogenesis-related gene expression in two Rhizoctonia solani pathosystems -
Rioux, R., Manmathan, H., Singh, P., De Los Reyes, B., Jia, Y., Tavantzis, S. 2011. Comparative analysis of putative pathogenesis-related gene expression in two Rhizoctonia solani pathosystems. Current Genetics. 57:391-408.
Molecular evolution of flowering time loci in U.S. weedy rice -
Thurber, C., Olsen, K., Jia, Y., Caicedo, A. 2011. Molecular evolution of flowering time loci in U.S. weedy rice [abstract]. In: Botany 2011, July 9 – 13, 2011, St. Louis, Missouri. p. 274.
Inoculation and Scoring Methods for Rice Sheath Blight Disease Caused by Rhizoctonia solani -
Jia, Y., Liu, G., Park, D., Yang, Y. 2013. Inoculation and scoring methods for rice sheath blight disease caused by Rhizoctonia solani. In: Yang, Y., editor. Rice Protocols. Methods in Molecular Biology Book Series, Volume 956. Humana Press. p. 257-268.
Analysis of rice blast resistance gene Pi-z in rice germplasm using pathogenicity assays and DNA markers -
RoyChowdhury, M., Jia, Y., Jackson, A.K., Jia, M.H., Fjellstrom, R.G., Cartwright, R. 2012. Analysis of rice blast resistance gene Pi-z in rice germplasm using pathogenicity assays and DNA markers. Euphytica. 184:35-46.
Sheath-blight resistance QTLs and in japonica rice germplasm -
Nelson, J., Oard, J.H., Groth, D., Utomo, H., Jia, Y., Liu, G., Moldenhauer, K.K., Correa-Victoria, F.J., Fjellstrom, R.G., Scheffler, B.E., Prado, G.A. 2012. Sheath-blight resistance QTLs and in japonica rice germplasm. Euphytica. 184:23-24. 10.1007/s10681-011-0475-1.
The short and the long of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice -
Reagon, M., Thurber, C.S., Olsen, K.M., Jia, Y., Caicedo, A.L. 2011. The short and the long of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice. Molecular Ecology. 20:3743-3756.
Breeding for rice fissure resistance made possible through development of a new selection technique and identification of molecular gene tags -
Pinson, S.R., Gibbons, J., Jia, Y. 2011. Breeding for rice fissure resistance made possible through development of a new selection technique and identification of molecular gene tags. Texas Rice Special Section, Highlighting Research in 2011. p. II.
Release of four new breeding lines having resistance to blast and sheath blight diseases -
Jia, Y., Bryant, R.J., Jia, M.H., McClung, A.M., Liu, G., Oard, J., Correa, F. 2011. Release of four new breeding lines having resistance to blast and sheath blight diseases. Texas Rice Special Section, Highlighting Research in 2011. p. VIII-IX.
Biocontrol-based sheath blight management to reduce fungicide use on rice -
Zhou, X., Kumar, K.A., Reddy, M.S., Liu, G., Kloepper, J.W., Jia, Y., Allen, T.W., Lu, S. 2011. Biocontrol-based sheath blight management to reduce fungicide use on rice. Texas Rice Special Section, Highlighting Research in 2011. p. XXIV-XXV.
Molecular mapping of yield related traits in a recombinant inbred line population of a Nipponbare x 93-11 cross and identification of candidate genes associated with heterosis in rice -
Venu, R., Jia, Y., Liu, G., Jia, M.H., Nobuta, K., Sreerekha, M., Moldenhauer, K., Pellegrini, M., Jacobsen, S., McClung, A.M., Meyers, B., Wang, G. 2011. Molecular mapping of yield related traits in a recombinant inbred line population of a Nipponbare x 93-11 cross and identification of candidate genes associated with heterosis in rice [abstract]. American Society of Plant Biologists Annual Meeting, Minneapoli, Minnesota. Abstract P15068.
Genetic and genomic dissection of resistance genes to the rice sheath blight pathogen -
Jia, Y. 2010. Genetic and genomic dissection of resistance genes to the rice sheath blight pathogen. Plant and Animal Genome Conference. http://www.intl-pag.org/19/abstracts/P05b_PAGXIX_257.html.
Isolation and characterization of a phytotoxin from Rhizoctonia solani, the causal agent of rice sheath blight -
Yang, Y., Yang, M., Li, M., Jia, Y., Zhou, E. 2011. Isolation and characterization of a phytotoxin from Rhizoctonia solani, the causal agent of rice sheath blight. Asian Journal of Chemistry 23(8):3500-3508.
Linkage Block and Recombination Suppression at the Pi-ta locus at the Centromere Region of Rice Chromosome 12 -
Jia, Y., Jia, M.H., Liu, G. 2011. Linkage Block and Recombination Suppression at the Pi-ta locus at the Centromere Region of Rice Chromosome 12. American Phytopathology Society. 101:S82.
Characterization of the Pi-b Rice Blast Resistance Gene in the National Small Grains -
Roychowdhury, M., Jia, Y., Jia, M.H., Fjellstrom, R.G., Cartwright, R.D. 2011. Characterization of the Pi-b Rice Blast Resistance Gene in the National Small Grains. American Phytopathology Society. 101:S156.
Mapping Quantitative Trait Loci for Resistance to Rice Blast -
Jia, Y., Liu, G. 2011. Mapping quantitative trait loci for resistance to rice blast. Phytopathology. 101(2):176-181.
Development of genetic and molecular toolboxes to control both rice blast and sheath blight -
Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae -
Dai, Y., Jia, Y., Correll, J.C., Wang, X., Wang, Y. 2010. Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae. Fungal Genetics and Biology. 47:973-980.
Development of strategies to manage rice blast disease in the USA Reprint Icon -
Jia, Y., Lin, M.J., Dai, Y., Costanzo, S., Lee, S., Rubinelli, F.G., Green, E.A., Jia, M.H., Mcclung, A.M., Fjellstrom, R.G., Correll, J.C., Roy-Chowdhury, M., Cartwright, R., Lee, F.N., Moldenhauer, K.K., Liu, G., Zhou, X.G., Wang, X., Wu, D., Rioux, R.A., Tavantzis, S., Xing, J., Yan, L., Singh, P. 2010. Development of strategies to manage rice blast disease in the USA. Symposium Proceedings. IV-P-62.
Plants and pathogens engage in trench warfare-knowledge learned from natural variation of rice blast resistance gene Pi-ta and the corresponding avirulence gene AVR-Pita1 -
Jia, Y. 2011. Plants and pathogens engage in trench warfare-knowledge learned from natural variation of rice blast resistance gene Pi-ta and the corresponding avirulence gene AVR-Pita1 [abstract]. In: Fifth International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. p. 9.
Evolutionary dynamics and structure of the rice blast resistance locus Pi-ta in wild, cultivated, and US weedy rice -
Lee, S., Jia, Y., Costanzo, S., Olsen, K.M., Caicedo, A., Gealy, D.R., Jia, M.H. 2010. Evolutionary dynamics and structure of the rice blast resistance locus Pi-ta in wild, cultivated, and US weedy rice [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Abstract II-CO-85.
Identification of rice blast resistant gene Pi-z(t) in NSGC using DNA markers and pathogenicity assays -
Roy-Chowdhury, M., Jia, Y., Jia, M.H., Jackson, A.K., Fjellstrom, R.G., Cartwright, R.D. 2010. Identification of rice blast resistant gene Pi-z(t) in NSGC using DNA markers and pathogenicity assays [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract IV-CP-51.
Mapping quantitative trait loci of rice to blast using physiological races of the fungus -
Liu, G., Jia, Y. 2010. Mapping quantitative trait loci of rice to blast using physiological races of the fungus [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract IV-P-56.
New insight for two major rice blast R genes: Pi-ta and Pi-km -
Costanzo, S., Yang, Y., Jia, Y. 2010. New insight for two major rice blast R genes: Pi-ta and Pi-km [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Abstract II-CO-84.
Characterization of rice lesion mimic mutants of 93-11 for a better understanding of general host defense response to both rice blast and sheath blight diseases -
Wang, X., Wu, D., Jia, Y., Zhang, M. 2011. Characterization of rice lesion mimic mutants of 93-11 for a better understanding of general host defense response to both rice blast and sheath blight diseases [abstract]. In: Fifth International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. p. 23.
Understanding the molecular mechanism of instability of the avirulence gene AVR-Pita1 in field isolates of Maganporthe oryzae -
Dai, Y., Correll, J.C., Jia, Y. 2010. Understanding the molecular mechanism of instability of the avirulence gene AVR-Pita1 in field isolates of Maganporthe oryzae [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract I-CP-12.
Rice blast disease in Texas Reprint Icon -
Zhou, X.G., Mcclung, A.M., Jia, Y. 2010. Rice blast disease in Texas. Symposium Proceedings. IV-P-65.
Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies -
Reddyvari-, C.V., Madhav, S., Nobuta, K., Sreerekha, M.V., Chen, S., Songkumarn, P., Jia, Y., Meyers, B.C., Wang, G. 2010. Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies [abstract]. 5th International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas. Poster Abstract II-CP-30.
Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies -
Reddyvari-Channaraya, V., Madhav, M., Nobuta, K., Sreerekha, M.V., Chen, S., Songkumarn, P., Jia, Y., Meyers, B.C., Wang, G. 2011. Expression profiling of common and specific defense responses of rice to Magnaporthe oryzae infection using deep sequencing technologies [abstract]. In: Fifth International Rice Blast Conference, August 12-14, 2010, Little Rock, Arkansas p. 75.
New method opens opportunity to proactively select for fissure resistance in early breeding generations -
Pinson, S.R., Gibbons, J.R., Jia, Y. 2010. New method opens opportunity to proactively select for fissure resistance in early breeding generations. Texas Experiment Station Field Day Handout. VI-VII - http://beaumont.tamu.edu/eLibrary/Newsletter/2010_Highlights_in_Research.pdf..
Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice -
Reagon, M., Thurber, C.S., Gross, B.L., Olsen, K.M., Jia, Y., Caicedo, A.L. 2010. Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. BMC Evolutionary Biology. 10(180):1-16.
Establishment of new rice disease nurseries in Texas Reprint Icon -
Zhou, X.G., Tabien, R.E., Jia, Y., Mcclung, A.M., Mccauley, G., Liu, G., Vawter, J. 2010. Establishment of new rice disease nurseries in Texas. Texas Experiment Station Field Day Handout. Texas rice Special Section XVII.
Gene discovery of crop disease in the postgenome era -
Jia, Y. 2011. Gene discovery of crop disease in the postgenome era. In: Gu, W., Wang, Y., editors. Gene Discovery for Disease Models, 1st edition. John Wiley & Sons, Inc. p. 425-441.
Co-evolution of the rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita1 -
Jia, Y. 2010. Co-evolution of the rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita1. In: 19th International Plant Resistance to Insects, Charleston, SC, March 28-31,2010.
Sequence variation at the rice blast resistance gene Pi-km locus: Implications for the development of allele specific markers Reprint Icon -
Costanzo, S., Jia, Y. 2010. Sequence variation at the rice blast resistance gene Pi-km locus: Implications for the development of allele specific markers. Plant Science. 178-523-530.
Molecular evolution of the sh4 shattering locus in U.S. weedy rice -
Thurber, C.S., Reagon, M., Gross, B.L., Olsen, K.M., Jia, Y., Caicedo, A.L. 2010. Molecular evolution of the sh4 shattering locus in U.S. weedy rice. Molecular Ecology. 19:3271-3284.
Early generation selection for rice fissure resistance proves effective and indicates a fissure resistance gene on chromsome 1 -
Pinson, S.R., Jia, Y., Gibbons, J. 2010. Early generation selection for rice fissure resistance proves effective and indicates a fissure resistance gene on chromsome 1. Rice Technical Working Group Meeting Proceedings. CDROM.
Compare and contrast invasive growths and global gene expressions of rice after infections with rice blast and sheath blight pathogens -
Jia, Y., Wang, G.L. 2010. Compare and contrast invasive growths and global gene expressions of rice after infections with rice blast and sheath blight pathogens [abstract]. Rice Technical Working Group Meeting Proceedings, February 18-20, 2008, San Diego, California. CDROM.
Linkage Drag: Implication for Plant Breeding -
Jia, Y., Costanzo, S., Lee, S., Lin, M.J., Jia, M.H. 2010. Linkage Drag: Implication for Plant Breeding. In: Proceedings of the 33rd Rice Technical Working Group Meeting. CDROM.
An update of genetic studies of disease resistance genes and their utilizations for rice protection -
Jia, Y., Costanzo, S., Lee, S., Dai, Y., Correll, J., Roy-Chodhury, M., Cartwright, R., Lee, F. 2010. An update of genetic studies of disease resistance genes and their utilizations for rice protection. In: Proceedings of the Rice Technical Working Group Meeting, Feb. 22-24, 2010, Biloxi, MS. CDROM
Confirming QTLs and finding additional Loci responsible for resistance to Sheath Blight in Rice -
Lui, G., Jia, Y., Mcclung, A.M., Oard, Correll, J.C. 2010. Confirming QTLs and finding additional Loci responsible for resistance to Sheath Blight in Rice. In: Proceedings of the 33rd Rice Technical Working Group Meeting, Feb. 22-24, 2010, Biloxi, MS. CDROM
Characterization of the Recombinant Inbred Line Population Derived from the Cross of Nipponbare/9311 -
Liu, G., Jia, Y., Jia, M.H., Venu, R., Wang, G., Meyers, B., McClung, A.M. 2010. Characterization of the Recombinant Inbred Line Population Derived from the Cross of Nipponbare/9311. In: Proceedings of the 33rd Rice Technical Working Group Meeting, Feb. 22-24, 2010, Biloxi, MS. CDROM
New Marker Development for the Rice Blast Resistance Gene Pi-km -
Costanzo, S., Jia, Y. 2010. New Marker Development for the Rice Blast Resistance Gene Pi-km. In: Proceedigs 33rd Rice Technical Working Group Meetings, February 22-24, 2010, Biloxi, MS. CDROM.
Characterization of interacting genes with the rice blast fungus avirulence gene AVR-Pita -
Xing, J., Lee, S., Jia, Y., Yuan, L. 2010. Characterization of interacting genes with the rice blast fungus avirulence gene AVR-Pita. American Phytopathological Society Annual Meeting, Feb. 7-8, 2010, Orlando, FL. CDROM
Understanding the molecular mechanisms of the instability of rice blast resistance -
Jia, Y. Understanding the molecular mechanisms of the instability of rice blast resistance. In: Proceedings of Plant and Animal Genome XVIII Conference, January 9-13, 2010, San Diego, CA. p. 521.
Molecular evolution of weed-adaptive traits in US red rice populations -
Olsen, K.M., Gross, B.L., Hsu, S., Reagon, M., Jia, Y., Caicedo, A.L. 2010. Molecular evolution of weed-adaptive traits in US red rice populations. Poster presented at the Plant and Animal Genome XVIII Conference, San Diego, CA. January 9-13, 2010.
The origin of weediness in U.S. red rice -
Caicedo, A.L., Reagon, M., Thurber, C.S., Olsen, K.L., Gross, B.L., Jia, Y. 2010. The origin of weediness in U.S. red rice [abstract]. Plant and Animal Genome Conference Proceedings, January 9-13, 2010, San Diego, California. Abstract W629.
Seeing red: The origin of grain pigmentation in US weedy rice -
Goss, B.L., Reagon, M., Hsu, S., Caicedo, A.L., Jia, Y., Olsen, K.M. 2010. Seeing red: The origin of grain pigmentation in US weedy rice. Molecular Ecology. 19:3380-3393.
Registration of 'RU9101001'/'Katy' recombinant inbred lines of rice -
Jia, Y., Moldenhauer, K.A. 2010. Development of morogenic and digenic rice lines for blast resistance genes of Pi-ta, Pi-kh/Pi-ks. Journal of Plant Registrations. 4:163-166.
A population of ‘TeQing’-into-‘Lemont’ chromosome segment substitution lines supports QTL discovery, fine-mapping, and determination of breeding values -
Pinson, S.R., Liu, G., Jia, M.H., Jia, Y., Fjellstrom, R.G., Sharma, A., Yang, Y., Tabien, R.E., Li, Z. 2009. A population of ‘TeQing’-into-‘Lemont’ chromosome segment substitution lines supports QTL discovery, fine-mapping, and determination of breeding values. 6th International Rice Genetics Symposium on Nov. 16-18, 2009, Manilla, Philippines. P9-1 Page 215.
Structural and expressional analysis of the B-hordein genes in Tibetan hull-less barley -
Han, Z., Wu, F., Deng, G., Qian, G., Yu, M., Jia, Y. 2009. Structural and expressional analysis of the B-hordein genes in Tibetan hull-less barley. Genetica. 138-227-239.
Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome Oryza species Reprint Icon -
Lee, S., Costanzo, S., Jia, Y., Olsen, K.M., Caicedo, A.L. 2009. Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome Oryza species. Genetics. 183:1315-1325.
A user friendly method to isolate and single spore the fungi Magnaporthe oryzae and Magnaporthe grisea obtained from diseased field samples -
Jia, Y. 2009. A user friendly method to isolate and single spore the fungi Magnaporthe oryzae and Magnaporthe grisea obtained from diseased field samples. Plant Health Progress. Available: doi:10.1094/PHP-2009-1215-01-BR.
Molecular Plant Pathology: Develop tools and resources for crop protection -
Structural and functional analysis of rice blast avirulence gene AVR-Pita1 in Magnaporthe oryzae -
RiceCAP: Progress in identifying QTL for sheath blight resistance and milling yield -
Mcclung, A.M., Boza, E., Brooks, S.A., Correll, J., Eizenga, G.C., Fjellstrom, R.G., Groth, D.E., Jia, Y., Jodari, F., Linscombe, S.D., Liu, G., Moldenhauer, K.K., Nelson, J.C., Oard, J., Pinson, S.R., Prasad, B., Scheffler, B.E., Yeater, K.M., Wang, Y. 2009. RiceCAP: Progress in identifying QTL for sheath blight resistance and milling yield. American Society of Agronomy Abstracts.
Alternatively spliced transcripts of Pi-ta blast resistance gene in Oryza sativa Reprint Icon -
Costanzo, S., Jia, Y. 2009. Alternatively spliced transcripts of Pi-ta blast resistance gene in Oryza sativa. Plant Science. 177:468-478.
Characterization of Pi-ta Blast resistance gene in an international rice core collection -
Wang, X., Fjellstrom, R.G., Jia, Y., Yan, W., Jia, M.H., Scheffler, B.E., Wu, D., Shu, Q., McClung, A.M. 2010. Characterization of Pi-ta Blast resistance gene in an international rice core collection. Plant Breeding. 129(5):491-501.
Selection for fissure resistance now made possible in early breeding generations -
Pinson, S.R., Gibbons, J., Jia, Y. 2009. Selection for fissure resistance now made possible in early breeding generations. Texas Rice, Highlighting Research in 2009. pp. VI-VII.
Artificial introgression of a large fragment around the Pi-ta rice blast resistance gene in backcross progenies and several elite rice cultivars -
Jia, Y. 2009. Artificial introgression of a large fragment around the Pi-ta rice blast resistance gene in backcross progenies and several elite rice cultivars. Heredity. 103(4):333-339.
Current progress on genetic interactions of rice with rice blast and sheath blight fungi Reprint Icon -
Jia, Y., Liu, G., Costanzo, S., Lee, S., Dai, Y. 2009. Current progress on genetic interactions of rice with rice blast and sheath blight fungi. Frontiers of Agriculture in China. 3(3):231-239.
Mapping quantitative trait loci responsible for resistance to rice sheath blight disease using greenhouse assays -
Liu, G., Jia, Y., Correa-Victoria, F.J., Prado, G.A., Yeater, K.M., McClung, A.M., Correll, J.C. 2009. Mapping quantitative trait loci responsible for resistance to rice sheath blight disease using greenhouse assays. Phytopathology. 99(9):1078-1084.
Identification of two major resistance genes against race IE-1k of Magnaporthe oryzae in the indica rice cultivar ZHE733 -
Lee, S., Wasmishe, Y., Jia, Y., Liu, G., Jia, M.H. 2009. Identification of two major resistance genes against race IE-1k of Magnaporthe oryzae in the indica rice cultivar ZHE733. Molecular Breeding. 24:127-134.
Determination of resistance spectra of the Pi-ta and Pi-k genes to US races of Magnaporthe oryzae causing rice blast in a recombinant inbred line population -
Jia, Y., Lee, F.N., McClung, A.M. 2009. Determination of resistance spectra of the Pi-ta and Pi-k genes to U.S. races of Magnaporthe oryzae causing rice blast in a recombinant inbred line population. Plant Disease. 93(6):639-644.
Structural and functional analysis of the avirulence gene AVR-Pita1 of the rice blast fungus in isolates of Magnaporthe oryzae worldwide -
Dai, Y., Jia, Y., Correll, J.C. 2009. Structural and functional analysis of the avirulence gene AVR-Pita1 of the rice blast fungus in isolates of Magnaporthe oryzae worldwide [abstract]. In: Plant and Animal Genome XVII Conference Abstracts. January 10-14, 2009, San Diego, California. P679.
Molecular evolution and strong selective sweep at the rice blast resistance gene Pi-ta during crop domestication -
Lee, S., Jia, Y. 2009. Molecular evolution and strong selective sweep at the rice blast resistance gene Pi-ta during crop domestication. In: Proceedings Plant and Animal Genome XVII Conference, January 10-14, 2009, San Diego,CA. P243.
Mapping two major resistance genes in an indica cultivar Zhe733 to the race IE-1K of Magnaporthe oryzae -
Lee, S., Wamishe, Y., Jia, Y., Liu, G., Jia, M.H. 2009. Mapping two major resistance genes in an indica cultivar Zhe733 to the race IE-1K of Magnaporthe oryzae. In: Proceedings of Plant and Animal Genome XVII Conference, January 10-14-2009, San Diego, CA. W506.
Worldwide distribution and origin of rice blast resistance gene Pi-ta -
Xueyan, W., Fjellstrom, R.G., Jia, Y., Yan, W., Jia, M.H., Scheffler, B.E., Dianxing, W., Qingyao, S., McClung, A.M. 2009. Worldwide distribution and origin of rice blast resistance gene Pi-ta. In: Proceedings of the Plant and Animal Genome Conference XVII, January 10-14-2009, San Diego, CA. P116.
Effective early-generation selection for rice resistant to kernel fissuring to hasten breeding efforts -
Pinson, S.R., Gibbons, J.W., Jia, Y. 2009. Effective early-generation selection for rice resistant to kernel fissuring to hasten breeding efforts. Rice Utilization Workshop Proceedings. http://www.usarice.com/doclib/124/3957.pdf.
Origins and evolution of weedy rice in the US -
Olsen, K.M., Reagon, M., Caicedo, A.L., Gross, B.L., Jia, Y., Lee, S. 2009. Origins and evolution of weedy rice in the US. In: Proceedings of Plant and Animal Genome Conference XVII, January 10-14, 2009, San Diego, CA. W506.
Field resistance expressed when the PI-TA gene is compromised by Magnaporthe oryzae -
Lee, F.N., Cartwright, R.D., Jia, Y., Correll, J.C. 2009. Field resistance expressed when the PI-TA gene is compromised by Magnaporthe oryzae. In: Wang, G.-L., Valen, B., editors. Advances in Genetics, Genomics and Control of Rice Blast Disease. Springer Science and Media. p. 281-290.
Examination of the rice blast pathogen population diversity in Arkansas, USA – Stable or Unstable? -
Correll, J.C., Boza, E.J., Seyran, E., Cartwright, R.D., Jia, Y., Lee, F.N. 2009. Examination of the rice blast pathogen population diversity in Arkansas, USA – Stable or Unstable? In: Wang, X., Balent, B., editors. Advance in Genetics, Genomics, and Control of Rice Blast Disease. Springer, Berlin. p. 217-228.
Signaling in the rice and Rhizoctonia pathosystem -
Early generation selection for resistance to rice kernel fissuring proves effective -
Pinson, S.R., Gibbons, J.W., Jia, Y. 2008. Early generation selection for resistance to rice kernel fissuring proves effective. [abstract] American Society of Agronomy Abstracts. p. 552-8.
Haplotype diversity at the Pi-ta locus in cultivated rice and its wild relataives -
Wang, X., Jia, Y., Shu, Q., Wu, D. 2008. Haplotype diversity at the Pi-ta locus in cultivated rice and its wild relataives. Phytopathology. 98:1305-1311.
Understanding the molecular mechanisms of rice blast resistance using rice mutants -
Jia, Y. 2009. Understanding the molecular mechanisms of rice blast resistance using rice mutants. Shu, Q.Y., editor, Induced Plant Mutations in the Genomics Era. Food and Agriculture Organization of the United Nations, Rome. p. 375-378.
Signaling in the Rhizoctonia solani-rice pathosystem -
Jia, Y. 2008. Signaling in the Rhizoctonia solani-rice pathosystem. Symposium Proceedings. p. 14.
Sequence variation of the rDNA internal transcribed spacer (ITS) region among isolates of Rhizoctonia solani -
Gomaa, N.M., Rothrock, C.S., Jia, Y. 2008. Sequence variation of the rDNA internal transcribed spacer (ITS) region among isolates of Rhizoctonia solani. Proceedings of 4th International Symposium of Rhizoctonia, Aug. 20-22, 2008, Berlin Germany. p. 50.
Development of the recombinant inbred line population of tropical japonica Lemont crossed with indica Jasmine 85 -
Jia, Y., Liu, G., McClung, A.M. 2008. Development of the recombinant inbred line population of tropical japonica Lemont crossed with indica Jasmine 85. American Phytopathology Society 98:S75.
Analysis of genomic variation of rice blast resistance gene Pi-ta in oryza species -
Lee, S., Jia, Y. 2008. Analysis of genomic variation of rice blast resistance rene Pi-ta in oryza species. American Phytopathology Society. 98:S87.
Structural and functional analysis of the rice blast fungus avirulence gene AVR-Pita -
Dai, Y., Jia, Y., Wang, X., Lee, F.N., Wang, Y., Correll, J.C. 2008. Structural and functional analysis of the rice blast fungus avirulence gene AVR-Pita. American Phytopathology Society. 98:S44.
Identification of quantitative trait loci (QTLs) responsible for sheath blight resistance in rice using recombinant inbred line population of Lemont X Jasmine 85 -
Liu, G., Jia, Y., Correa-Victoria, F., McClung, A.M. 2008. Identification of quantitative trait loci (QTLs) responsible for sheath blight resistance in rice using recombinant inbred line population of Lemont X Jasmine 85 [abstract]. American Phytopathology Society. 98:S92.
Understanding the co-evolution of the rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita -
Jia, Y., Wang, X., Costanzo, S., Lee, S. 2009. Understanding the co-evolution of the rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita. In: Wang, X., Valent, B., editors. Advances in Genetics, Genomics and Control of Rice Blast Disease. Springer, Berlin. p. 137-148.
Registration of TIL:455, TIL:514, and TIL:642, three rice germplasm lines containing introgressed sheath blight resistance alleles -
Pinson, S.R., Oard, J.H., Groth, D., Miller, R., Jia, M.H., Jia, Y., Fjellstrom, R.G., Mackill, D., Li, Z. 2008. Registration of TIL:455, TIL:514, and TIL:642, three rice germplasm lines containing introgressed sheath blight resistance alleles. Journal of Plant Registrations. 2(3):251-254.
Mapping of a genetic component required for Pi-ta-mediated signal recognition -
Costanzo, S., Jia, M.H., Jia, Y. 2008. Mapping of a genetic component required for Pi-ta-mediated signal recognition. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Using a set of TeQing-into-Lemont chromosome segment substitution lines for fine mapping QTL: Case studies on sheath blight resistance, spreading culm, and mesocotyl elongation -
Pinson, S.R., Wang, Y., Liu, G., Jia, M.H., Jia, Y., Sharma, A., Fjellstrom, R.G., Tabien, R.E. 2008. Using a set of TeQing-into-Lemont chromosome segment substitution lines for fine mapping QTL: Case studies on sheath blight resistance, spreading culm, and mesocotyl elongation. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Identification of SSR markers for a broad-spectrum blast resistance gene Pi-20(t) for marker-assisted breeding -
Li, W., Lei, C., Cheng, Z., Jia, Y., Huang, D., Liu, Z., Wang, J., Shi, K., Zhang, X., Su, N., Guo, X., Zhai, H., Wan, J. 2008. Identification of SSR markers for a broad-spectrum blast resistance gene Pi-20(t) for marker-assisted breeding. Molecular Breeding. 22:141-149.
Identification of a new locus Ptr(t) required for rice blast resistance gene Pi-ta-mediated resistance -
Jia, Y., Marin, R. 2008. Identification of a new locus Ptr(t) required for rice blast resistance gene Pi-ta-mediated resistance. Molecular Plant-Microbe Interactions. 21(4):396-403.
Global Gene Expression of Rice after Infections with Rice Blast and Sheath blight Pathogens -
Jia, Y., Wang, G., Valent, B. 2008. Global gene expression of rice after infections with rice blast and sheath blight pathogens. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Mechanisms of Rice Blast Resistance and Its Implication for Breeding for Improved Resistance -
Jia, Y. 2008. Mechanisms of Rice Blast Resistance and Its Implication for Breeding for Improved Resistance. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Development and Characterization of Deletion and Mapping Populations for Functional Genomics and Rice Breeding -
Jia, Y., Rutger, J.N., Moldenhauer, K.K., Gibbons, J. 2008. Development and characterization of deletion and mapping populations for functional genomics and rice breeding. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Identification of Sheath Blight Resistance QTLs in Rice Using Recombinant Inbred Line Population of Lemont X Jasmine 85 -
Liu, G., Jia, Y., Correa, F., Jia, M.H., McClung, A.M., Groth, D., Correll, J.C., Rutger, J.N. 2008. Identification of sheath blight resistance QTLs in rice using recombinant inbred line population of Lemont X Jasmine 85. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Molecular Characterization of the Recombinant Inbred Line Population of the Cross of Lemont with Jasmine 85 -
Liu, G., Jia, Y., Jia, M.H., McClung, A.M., Correll, J.C. 2008. Molecular characterization of the recombinant inbred line population of the cross of Lemont with Jasmine 85. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Analysis of the effectiveness of the rice blast resistance gene Pi-ta -
Costanzo, S., Wang, X., Jia, Y. 2008. Analysis of the effectiveness of the rice blast resistance gene Pi-ta. In: Proceedings of the 32nd Rice Technical Working Group Meetings, February 18-21, 2008, San Diego, CA. 2008. CDROM.
Carolina foxtail (Alopecurus carolinianus): susceptibility and suitability as an alternative host to rice blast disease (Magnaporthe oryzae [formerly M. grisea]) -
Jia, Y., Gealy, D.R., Lin, M., Wu, L., Black, H.L. 2008. Carolina foxtail (Alopecurus carolinianus): susceptibility and suitability as an alternative host to rice blast disease (Magnaporthe oryzae [formerly M. grisea]). Plant Disease. 92(4):504-507. doi:10.1094/PDIS-92-4-0504.
HOST ACTIVE DEFENSE RESPONSES OCCUR 24 HOURS AFTER PATHOGEN INOCULATION IN THE RICE BLAST SYSTEM -
Jia, Y., Lin, H., Wang, Z., Valent, B., Rutger, J.N. 2007. Host active defense responses occur 24 hours after pathogen inoculation in the rice blast system. Chinese Journal of Rice Science. 14(4):302-310.
A new rice gene-mapping population containing indica chromosomal segments introgressed into a tropical japonica background -
Pinson, S.R., Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G., Sharma, A. 2007. A new rice gene-mapping populatin containing indica chromosomal segments introgressed into a tropical japonica background. [abstract] American Society of Agronomy Abstracts. p.277-6.
Development and characterization of RiceCAP QTL mapping population for sheath blight resistance -
Mcclung, A.M., Groth, D., Oard, J.H., Utomo, H., Moldenhauer, K.K., Boza, E., Scheffler, B.E., Jia, Y., Liu, G., Correa, F., Fjellstrom, R.G. 2007. Development and characterization of RiceCAP QTL mapping population for sheath blight resistance. [abstract] American Society of Agronomy Abstracts. p. 259-4.
The structure and regulation of genes and consequences of their genetic mutations -
Lee, S., Costanzo, S., Jia, Y. 2012. The structure and regulation of genes and consequences of their genetic mutations. In: Shu, Q.-Y., Forster, B.P., Nakagawa, H. editor. Plant Mutation Breeding and Biotechnology. CAB International:Cambridge. p. 33-47.
Understanding the coevolution of rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita -
Jia, Y. 2007. Understanding the coevolution of rice blast resistance gene Pi-ta and Magnaporthe oryzae avirulence gene AVR-Pita. Intl. Rice Blast Conference, October 8-14, 2007, Changsha, China p. 27.
Examination of the rice blast pathogen population diversity between 1990 and 2006 - Stable or unstable? -
Correll, J.C., Boza, E.J., Seyran, E., Cartwright, R.D., Jia, Y., Lee, F.N. 2007. Examination of the rice blast pathogen population diversity between 1990 and 2006 - Stable or unstable? 4th Intl. Rice Blast Conference, October 108-14, 2007, Changsha, China. p. 46.
Host active defense responses occur within 24 hours after pathogen inoculation in the rice blast system -
Wang Zhonghua, Jia, Y., Lin, H., Valent, B., Rutger, J.N. 2007. Host active defense responses occur within 24 hours after pathogen inoculation in the rice blast system. 4th Intl. Rice Blast Conference, October 8-14, 2007, Changsha, China. p. 37.
STUDIES ON ISOLATES OF RHIZOCTONIA SOLANI FROM ARKANSAS FOR MANAGEMENT OF RICE SHEATH BLIGHT -
Wamishe, Y.A., Jia, Y., Singh, P., Cartwright, R.D., Eizenga, G.C., Lee, F.N. 2007. Studies on isolates of Rhizoctonia solani from Arkansas for management of rice sheath blight. Frontiers of Agriculture in China. 1(47):361-367.
Reactive oxygen species trigger a regulatory module invovled in the early responses of rice seedlings to cold stress -
Chen, C., Yun, K., Ressom, H., Mohanty, B., Bajic, V.B., Jia, Y., Yun, S., De Los Reyes, B.G. 2007. Reactive oxygen species trigger a regulatory module involved in the early responses of rice seedlings to cold stress. Biomed Central (BMC) Genomics. 18:175.
RL-SAGE and microarray analysis of the rice defense transcriptome after Rhizoctonia solani infection -
Venu, R.C., Jia, Y., Gowda, M., Jia, M.H., Jantasuriyarat, C., Stahlbert, E., Li, H., Rhineheart, A., Reddy, P., Singh, P., Rutger, J.N., Kudrna, D., Wing, R., Nelson, J.C., Wang, G. 2007. Rl-sage and microarray analysis of the rice defense transcriptome after Rhizoctonia solani infection. Molecular Genetics and Genomics. 278:421-431.
Molecular dynamics of interactions of rice with rice blast and sheath blight pathogens -
Jia, Y., Jia, M.H., Gubrij, K.I., Wang, G. 2007. Molecular dynamics of interactions of rice with rice blast and sheath blight pathogens. [abstract] American Phytopathological Society, July 28 - August 1, 2007, San Diego, CA. 97:S52.
Development of rice materials for studying the genomics of disease resistance -
Jia, Y., Lin, M.J., Liu, G., Mcclung, A.M. 2007. Development of rice materials for studying the genomics of disease resistance. [abstract] American Phytopathology Society, 97:S52.
Natural variation of rice blast resistant gene Pi-ta in Oryza species -
Wang, X., Jia, Y., Shu, Q. 2007. Natural variation of rice blast resistant gene Pi-ta in Oryza species. American Phytopathological Society Meeting, July 28-August 1, 2007, San Diego, CA. 97:S120.
Molecular mechanisms of the instability of rice blast fungus avirulence gene AVR-Pita -
Dai, Y., Jia, Y., Correll, J. 2007. Molecular mechanisms of the instability of rice blast fungus avirulence gene AVR-Pita. American Phytopathological Society, July 28-August 1, 2007, San Diego, CA. 97:S25.
Instability of the Magnaporthe oryzae Avirulence gene AVR-Pita alters virulence -
Zhou, E., Jia, Y., Singh, P., Correll, J.C., Lee, F.N. 2007. Instability of the Magnaporthe oryzae Avirulence gene AVR-Pita alters virulence. Fungal Genetics and Biology. 44:1024-1034.
The evolutionary genomics of weedy red rice in the U.S.A. -
Olsen, K.M., Caicedo, A.L., Jia, Y. 2007. The evolutionary genomics of weedy red rice in the U.S.A. Journal of Integrative Plant Biology. 49:811-816.
Rapid Determination of Rice Cultivar Responses to the Sheath Blight Pathogen Rhizoctonia solani Using a Micro-Chamber Screening Method -
Jia, Y., Coarrea-Victoria, F., McClung, A.M., Zhu, L., Liu, G., Wamishe, Y., Xie, J., Marchetti, M.A., Pinson, S.R., Rutger, J.N., Correll, J.C. 2006. Rapid determination of rice cultivar responses to the sheath blight pathogen Rhizoctonia solani using a micro-chamber screening method. Plant Disease. 91:485-489.
Evolutionary Genomics Of Invasive Weedy Rice -
Olsen, K., Caicedo, A.L., Jia, Y. 2007. Evolutionary Genomics Of Invasive Weedy Rice . Plant and Animal Genome.
Plants and pathogens engage in trench warfare-knowledge learned from natural variation of rice blast resistance gene Pi-ta -
Jia, Y. 2007. Plants and pathogens engage in trench warfare-knowledge learned from natural variation of rice blast resistance gene Pi-ta. Plant and Animal Genome Conference Proceedings.
Molecular characterization of a population of backcross introgression lines derived from crossing the US japonia rice cultivar Lemont as the recurrent parent withthe Chinese indica cultivar TeQing -
Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G., Sharma, A., Li, Z., Pinson, S.R. 2007. Molecular characterization of a population of backcross introgression lines derived from crossing the US japonia rice cultivar Lemont as the recurrent parent withthe Chinese indica cultivar TeQing. Plant and Animal Genome Conference Proceedings.
Natural variation of the rice blast resistance gene Pi-ta in Oryza species and its corresponding avirulence gene AVR-Pita in Magnaporthe oryzae -
Wang, X., Jia, Y., Correll, J., Lee, F.N., Wu, D., Shu, Q. 2007. Natural variation of the rice blast resistance gene Pi-ta in Oryza species and its corresponding avirulence gene AVR-Pita in Magnaporthe oryzae. Plant and Animal Genome Conference Proceedings.
New Breeding Parents Containing Novel QTL for Rice Sheath Blight Resistance Identified by Combining Phenotypic and Molecular Characterizations -
Pinson, S.R., Oard, J.H., Groth, D., Miller, R., Liu, G., Jia, Y., Jia, M.H., Fjellstrom, R.G. 2007. New Breeding Parents Containing Novel QTL for Rice Sheath Blight Resistance Identified by Combining Phenotypic and Molecular Characterizations. [abstract]. Plant and Animal Genome Conference XV, January 13-17, 2007, San Diego, CA. Available: http://intl-pag.org/15/abstracts.
CANDIDATE REGULATORS OF THE COLD STRESS RESPONSE GENE REGULON OF RICE -
De Los Reyes, B.G., Cheng, C., Yun, K.Y., Jia, Y., Ressom, H., Yun, S.J. 2006. Candidate regulators of the cold stress response gene regulon of rice. Proceedings 4th International Rice Genetic Symposium, Montpellier, France. p.117.
Translational genomics-rice research in agriculture research service -
Jia, Y. 2006. Translational genomics-rice research in agriculture research service [abstract]. China-US Biotech. Workshop, October 22-25, 2006, Beijin, China.
Candidate regulators of the cold stress response gene regulon of rice -
De Los Reyes, B.G., Cheng, C., Yun, K.Y., Jia, Y., Ressom, H., Gibbons, J., Yun, .S. 2006. Candidate regulators of the cold stress response gene regulon of rice. Meeting Proceedings.
MOLECULAR CHARACTERIZATION OF RICE RECOMBINANT INBRED LINE POPULATION DERIVED FROM A JAPONICA-INDICA CROSS -
Liu, G., Bernhardt, J., Jia, M.H., Wamishe, Y., Jia, Y. 2007. Molecular characterization of rice recombinant inbred line population derived from a japonica-indica cross. Euphytica. 159:73-82.
RAPID SURVEY FOR PRESENCE OF A BLAST RESISTANCE GENE PI-TA IN RICE CULTIVARS USING THE DOMINANT DNA MARKERS DERIVED FROM PORTIONS OF THE PI-TA GENE -
Wang, Z., Jia, Y., Rutger, J.N., Xia, Y. 2007. Rapid survey for presence of a blast resistance gene Pi-ta in rice cultivars using the dominant DNA markers derived from portions of the Pi-ta gene. Plant Breeding. 126:36-42.
HOST ACTIVE DEFENSE RESPONSES OCCUR WITHIN 24 HOURS POST-INOCULATION IN THE RICE BLAST SYSTEM -
Jia, Y., Lin, H., Wang, Z., Lin, M.J., Valent, B., Rutger, J.N. 2006. Host active defense responses occur within 24 hours post-inoculation in the rice blast system [abstract]. XII International Congress on Molecular Plant-Microbe Interactions. p. 91.
TWELVE RICE GERMPLASM ACCESSIONS IDENTIFIED WITH NOVEL BLAST RESISTANCE FOR US RICE VARIETY IMPROVEMENT -
Eizenga, G.C., Agrama, H.A., Lee, F.N., Yan, W., Jia, Y. 2006. Twelve rice germplasm accessions identified with novel blast resistance for US rice variety improvement. In? Norman, R.J. Meullenet, J.-F. and Moldenhauer, K.A.K., editors. B.R. Wells Rice Research Studies 2005. Arkansas Agricultural Experiment Station Research Series 540. p. 55-61. Available: http:www/uark.edu/depts/agripub/Publications/research series/.
DEVELOPMENT OF A MOLECULAR MARKER FROM THE RICE BLAST AVIRULENCE GEN AVR-PITA FOR SURVEILLANCE OF DURABLE RICE BLAST RESISTANCE CONFERRED BY PI-TA IN ARKANSAS -
Singh, P., Jia, Y., Boza, E.J., Correll, J.C., Lee, F.N. 2006. Development of a molecular marker from the rice blast avirulence gene AVR-Pita for surveillance of durable rice blast resistance conferred by Pi-ta in Arkansas. In: Norman, R.J., Meullenet, J.-F., Moldenhauer, K.A.K.., editors. B.R. Wells Rice Research Studies 2005 Arkansas Agricultural Experiment Station Research Series 540. p. 152-159.
MOLECULAR MECHANISMS OF THE INSTABILITY OF AVIRULENCE GENE AVR-PITA IN RICE BLAST FUNGUS MAGNAPORTHE ORYZAE -
Zhou, E., Jia, Y., Correll, J.C., Lee, F.N. 2006. Molecular mechanisms of the instability of avirulence gene avr-pita in rice blast fungus magnaporthe oryzae. In: Norman, R.J., Meullenet, J.-F., Moldenhauer, K.A.K., editors. B.R. Wells Rice Research Studies 2005, Arkansas Agricultural Experiment Station Research Series 540. p. 160-167. Available: http://www.uark.edu/depts/agripub/Publications/researchseries/.
INCORPORATING FOREIGN SHEATH BLIGHT RESISTANCE GENES INTO US RICE GEMPLASM -
Pinson, S.R., Fjellstrom, R.G., Shank, A.R., Oard, J., Groth, D., Jia, Y., Jia, M.H. 2006. Incorporating foreign sheath blight resistance genes into us rice gemplasm. Texas Rice, Highlighting Research 2006. pp.VI-VII.
Use of robust-long serial analysis of gene expression to identify novel fungal and plant genes. -
Gowda, M., Varichannarayappa, V., Jia, Y., Stahlberg, E., Pampanwar, V., Soderlund, C., Want, G. 2007. Use of rl-sage analysis to identify novel fungal and plant genes involved in host-pathogen interactions. In: Ronald, P.C., editor. Plant-Pathogen Interactions: Methods and Protocols. Humana Press, Inc., Totowa, NJ. p. 131-144.
DEVELOPMENT AND CHARACTERIZATION OF RICE MUTANTS ALTERED IN THE RICE BLAST RESISTANT GENE PI-TA-MEDIATED DISEASE RESISTANCE PATHWAY -
Jia, Y., Fjellstrom, R.G., Jia, Melissa H., Yan, W., Rutger, J.N., McClung, A.M. 2006. Development and characterization of rice mutants altered in the rice blast resistant gene pi-ta-mediated disease resistance pathway [abstract]. American Phytopathological Society Annual Meeting. Phytopathology. 96:S54.
RL-SAGE ANALYSIS OF THE RICE DEFENSE TRANSCRIPTOME DURING RICE AND RHIZOCTONIA SOLANI INTERACTION -
Venu, R.C., Jia, Y., Gowda, M., Jia, M.H., Bellizzi, M., Singh, P., Rutger, J.N., Wang, G. 2006. Rl-sage analysis of the rice defense transcriptome during rice and Rhizoctonia solani interaction [abstract]. American Phytopathological Society Abstracts. 96.
MOLECULAR AND AGRONOMIC CHARACTERIZATION OF NEWLY INTRODUCED BLAST RESISTANT RICE GERMPLASM -
Eizenga, G.C., Agrama, H.A., Lee, F.N., Yan, W., Jia, Y. 2006. Molecular and agronomic characterization of newly introduced blast resistant rice germplasm. Crop Science. 46:1870-1878.
GENOMIC ANALYSIS OF THE EARLY RESPONSES OF DEVELOPING RICE SEEDLINGS TO COLD STRESS -
Cheng, C., De Los Reyes, B.G., Jia, Y., Yun, S., Zhang, Y., Ressom, H. 2006. Genomic analysis of the early responses of developing rice seedlings to cold stress. Proceedings of the National Academy of Sciences. p. 13.
CHARACTERIZATION OF SHEATH BLIGHT PATHOGEN RHIZOCTONIA SOLANI AND ITS MOLECULAR INTERACTION WITH ORYZA SATIVA -
Jia, Y., Singh, P., Wamishe, Y., Jia, M.H., Gowda, M., Channaryappa, V.R., Zhou, E., Flowers, C., Lin, M.J., Wang, G.L., Rutger, J.N. 2006. Characterization of sheath blight pathogen Rhizoctonia solani and its molecular interaction with Oryza sativa. Bulletin for Biochemistry and Biotecnology of SAAS. Available: http//orgs.tntech.edu/saas/.
GENOMIC ANALYSIS OF THE EARLY RESPONSES OF DEVELOPING RICE SEEDLINGS TO COLD STRESS -
Cheng, C., De Los Reyes, B.G., Zhang, Y., Ressom, H., Jia, Y., Yun, S.J. 2006. Genomic analysis of the early responses of developing rice seedlings to cold stress [abstract]. In: Proceedings of the XIV Annual International Plant & Animal Genome Conference, Janaury 14-18, 2006, San Diego, California. p. 734.
GENOTYPIC AND PHENOTYPIC ASSESSMENT OF THE NSGC CORE COLLECTION OF RICE FOR RESISTANCT TO PYRICULARIA GRISEA -
McClung, A.M., Yan, W., Jia, Y., Lee, F.N., Marchetti, M.A., Fjellstrom, R.G. 2006. Genotypic and phenotypic assessment of the NSGC Core Collection of rice for resistance to Pyricularia grisea. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006. Houston, Texas. 2006 CDROM.
BRINGING QUANTITATIVE TRAITS UNDER BREEDER CONTROL BY COMBINING QTL MAPPING WITH CANDIDATE GENE APPROACHES: A CASE STUDY OF RICE SHEATH BLIGHT RESISTANCE -
Pinson, S.R., Jia, Y., Fjellstrom, R.G., Jia, M.H., Hulbert, S., Liu, K., Nelson, J.C. 2006. Bringing quantitative traits under breeder control by combining QTL mapping with candidate gene approaches: A case study of rice sheath blight resistance. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
MOLECULAR MECHANISMS OF BLAST RESISTANCE GENE PI-TA MEDIATED DEFENSE RESPONSE -
Jia, Y., Lin, M.J., Jia, M.H., Gubrij, K.I. 2006. Molecular mechanisms of blast resistance gene pi-ta mediated defense response [abstract]. In: Rice Technical Working Group Meeting Proceedings, February 29 - March 1, 2006, Houston, Texas. 2006. CDROM.
IDENTIFICATION OF NOVEL BLAST RESISTANCE GENES IN RICE CULTIVAR ZHE733 -
Wamishe, Y., Jia, Y., Jia, M.H., Liu, G. 2006. Identification of novel blast resistance genes in rice cultivar zhe733 [abstract]. In: Rice Technical Working Group Meeting Proceedings, February 28, 2006 - March 1, 2006, Houston, Texas. 2006. CDROM.
MOLECULAR CHARACTERIZATION OF RICE RECOMBINANT INBRED LINE POPULATION DERIVED FROM A JAPONICA-INDICA CROSS -
Liu, G., Bernhardt, J., Jia, M.H., Wamishe, Y., Jia, Y. 2006. Molecular characterization of rice recombinant inbred line population derived from a japonica-indica cross. Rice Technical Working Group Meeting Proceedings, Houston, Texas, February 29-March 2, 2006. 2006. CDROM.
DEVELOPMENT OF US GENETIC RESOURCES FOR RICE FUNCTIONAL GENOMICS -
Jia, Y., Rutger, J.N., Xie, J., Lin, M.J., Moldenhauer, K., Gibbons, J. 2006. Development of us genetic resources for rice functional genomics. Rice Technical Working Group Meeting Proceedings, February 29-March 2, 2006, Houston, TX. 2006 CDROM.
FIELD AND MILLING QUALITY ANALYSIS OF THE MY1 MAPPING POPULATION IN ARKANSAS -
Boza, E.J., Moldenhauer, K.A., Gibbons, J.W., Lee, F.N., Cartwright, R.D., Jia, Y., Boyette, V., Blocker, M.M. 2006. Field and milling quality analysis of the my1 mapping population in Arkansas [aabstract]. Rice Technical Working Group Meeting Proceedings, Feburary 28, 2006 -March 1, 2006, Houston, Texas. 2006. CDROM.
ADVANCES IN MARKER-ASSISTED SELECTION FOR RICE BLAST RESISTANCE -
Boyett, V.A., Gibbons, J.W., Moldenhauer, K.A., Jia, Y., McClung, A.M., Fjellstrom, R.G. 2006. Advances in marker-assisted selection for rice blast resistance. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006, Houston, Texas. 2006 CDROM.
PROGRESS IN DEVELOPING MOLECULAR MARKERS FOR TAGGING MAGNAPORTHE GRISEA PATHOTYPES IN THE USA -
Jia, Y., Zhou, E., Lee, F.N., Correll, J., Singh, P. 2006. Progress in developing molecular markers for tagging magnaporthe grisea pathotypes in the usa. Rice Technical Working Group Meeting Proceedings, February 29-March 1, 2006. 2006 CDROM.
DEVELOPMENT OF MOLECULAR STRATEGIES TO CONTROL RICE SHEATH BLIGHT DISEASE -
Jia, Y., Singh, P., Jia, M.H., Wang, G., Wamishe, Y., Zhu, L., Zhou, E. 2006. Development of molecular strategies to control rice sheath blight disease [abstract]. In: Rice Technical Working Group Meeting Proceedings, February 28 - March 1, 2006, Houston, Texas. 2006. CDROM.
CAROLINA FOXTAIL (ALOPECURUS CAROLINIANUS): SUSCEPTIBILITY AND SUITABILITY AS AN ALTERNATE HOST TO RICE BLAST DISEASE (P. GRISEA) -
Jia, Y., Gealy, D.R., Lin, M.J., Wu, L., Black, H.L. 2006. Carolina foxtail (alopecurus carolinianus): susceptibility and suitability as an alternate host to rice blast disease (p. grisea) [abstract]. In: Rice Technical Working Group Meeting Proceedings, Houston, Texas, February 29-March 2, 2006. 2006.CDROM.
PROGRESS IN DEVELOPING RNA MARKERS FOR DETERMINING DISEASE REACTIONS IN THE RICE BLAST SYSTEM -
Jia, Y., Valent, B. 2006. Progress in developing rna markers for determining disease reactions in the rice blast system [abstract]. In: Rice Technical Working Group Meeting Proceedings, February 28 - March 1, 2006, Houston, Texas. 2006. CDROM.
Molecular co-evolution of the rice Pi-ta resistance gene and Magnaporthe oryzae avirulence gene AVR-pita -
Jia, Y., Zhou, E., Winston, E., Singh, P., Correll, J., Lee, F.N., Valent, B. 2006. Molecular co-evolution of the rice Pi-ta resistance gene and Magnaporthe oryzae avirulence gene AVR-pita. In: Sanchez, F., Quinto, C., Lopez-Luna, I.M., Geiger, O., editors. Biology of Plant Microbe Interactions. Volume 5. International Society for Molecular Plant-Microbe Interactins. p. 325-339.
MOLECULAR CO-EVOLUTION OF THE RICE PI-TA RESISTANCE GENE AND MAGNAPORTHE GRISEA AVIRULENCE GENE AVR-PITA -
Jia, Y., Zhou, E., Winston, E.M., Singh, P., Correll, J., Valent, B. 2005. Molecular co-evolution of the rice Pi-ta resistance gene and Magnaporthe grisea avirulence gene AVR-Pita [abstract]. International Congress on Molecular Plant-Microbe Interactions. p. 3-7. Available: http://www.lbt.unam.mx/Cancun2005/concurrent182.html.
DEVELOPMENT AND CHARACTERIZATION OF KATY DELETION MUTANT POPULATIONS -
Jia, Y., Xi, J., Rutger, J.N. 2006. Development and characterization of Katy deletion mutant populations. Plant Mutation Reports. 1(1):43-47.
TRANSLATIONAL GENOMICS: A CASE STUDY OF RICE PI-TA RESISTANCE GENE -
Jia, Y., Zhou, E., Winston, E., Singh, P., Wang, Z., Correll, J., Lee, F., Jia, M.H. 2005. Translational genomics: a case study of rice Pi-ta resistance gene. In: Proceedings of International Conference on Plant Molecular Breeding, October 27-30, 2005. p. 3.
APPLIED GENOMICS: A SHORT STORY OF THE RICE PI-TA RESISTANCE GENE -
Jia, Y. 2005. Applied genomics: a short story of the rice Pi-ta resistance gene [abstract]. USDA-China Cooperation Workshop, Workshop was cancelled, abstract shared among ARS-China Cooperators on October 3, 2005.
RICE GERMPLASM CHARACTERIZED FOR R-GENES AND POPULATION STRUCTURE -
Eizenga, G.C., Agrama, H.A., Lee, F.N., Yan, W., Jia, Y. 2006. Rice germplasm characterized for R-genes and population structure. Proceedings 10th Congress of SABRAO, August 22-23, 2005, Tsukuba, Japan. CDROM.
UNDERSTANDING THE GENETIC DIVERSITY IN ORDER TO IDENTIFY R-GENES IN ORYZA SPP AND O. SATIVA -
Eizenga, G.C., Agrama, H.A., Lee, F.N., Yan, W., Jia, Y. 2005. Understanding the genetic diversity in order to identify R-genes in Oryza spp and O. sativa. In: Proceedings 5th International Rice Genetics Symposium, November 19-23, 2005, Manila, Philippines. 2005 CDROM.
Molecular aspects of rice blast disease resistance: Insights from structural and functional analysis of the Pi-ta and AVR-Pita gene pair -
Jia, Y., Valent, B. 2009. Molecular aspects of rice blast disease resistance: Insights from structural and functional analysis of the Pi-ta and AVR-Pita gene pair. In: Datta, S., editor. Rice Improvements in the Genomic Era. Boca Raton, FL: CRC Press, Taylor & Francis Group. p. 207-236.
DISTRIBUTION OF BLAST RESISTANCE GENE PI-TA IN THE USDA RICE CORE COLLECTION -
Yan, W., Fjellstrom, R.G., McClung, A.M., Jia, Y., Bockelman, H.E. 2005. Distribution of blast resistance gene Pi-ta in the USDA rice core collection [abstract]. American Society of Agronomy Abstracts. p. 230-3.
GENOMIC ANALYSIS OF THE EARLY RESPONSES OF DEVELOPING RICE SEEDLINGS TO COLD STRESS -
Cheng, C., Zhang, Y., Ressom, H., Jia, Y., Yun, S., De Los Reyes, B.G. 2006. Genomic analysis of the early responses of developing rice seedlings to cold stress [abstract]. American Society of Plant Biologists Annual Meeting. Available: www.aspb.org/search
CONTINUED EVALUATION OF BLAST RESISTANCE GENES IN RICE WILD RELATIVES (ORYZA SPP.) AND UNIQUE RICE (O. SATIVA) ACCESSIONS UTILIZING DNA MARKERS -
Eizenga, G.C., Agrama, H.A., Lee, F.N., Jia, Y. 2005. Continued evaluation of blast resistance genes in rice wild relatives (Oryza spp.) and unique rice (O. sativa) accessions utilizing DNA markers. In: Norman, R.J., Meullenet, J.-F., Moldenhauer, K.A.K., editors. B.R. Wells Rice Research Studies 2004, Arkansas Agricultural Experiment Station Research Series 529. p. 30-37. Available: http://www.uark.edu/depts/agripub/Publications/researchseries/
STUDIES ON ISOLATES OF RHIZOCTONIA SOLANI FROM ARKANSAS FOR MANAGEMENT OF RICE SHEATH -
Wamishe, Y.A., Jia, Y., Singh, P., Cartwright, R.D. 2005. Studies on isolates of Rhizoctonia solani from Arkansas for management of rice sheath. Arkansas Agricultural Experiment Station Research Series 529. p. 142-148.
A PRELIMINARY CHARACTERIZATION OF THE RICE BLAST FUNGUS ON 'BANKS' RICE -
Lee, F.N., Cartwright, R.D., Jia, Y., Correll, J.C., Moldenhauer, K.A., Gibbons, J.W., Boyett, V., Zhou, E., Boza, E., Seyran, E. 2005. A preliminary characterization of the rice blast fungus on 'Banks' rice. In: Norman, R.J., Meullenet, J.-F., Moldenhauer, K.A.K., editors. B.R. Wells Rice Research Studies 2004, Arkansas Agricultural Experiment Station Research Series 529. p. 103-110. Available: http://www.uark.edu/depts/agripub/Publications/researchseries/
TWO MAJOR RESISTANCE GENES CONFER RESISTANCE TO RACE SHIFT ISOLATES OVERCOMING BLAST RESISTANCE GENC PI-TA -
Jia, Y., Wamishe, Y., Jia, M.H., Lin, M.J., Eizenga, G.C., Gibbons, J.W., Moldenhauer, K..K.., Correll, J.C. 2005. Two major resistance genes confer resistance to race shift isolates overcoming blast resistance genc Pi-ta. In: Norman, R.J., Meullenet, J.-F., Moldenhauer, K.S.K., editors. B.R.Wells Rice Research Studies 2004, Arkansas Agricultural Experiment Station Research Series 529. p. 91-95 Available: http//www.uark.edu/depts/agripub/Publications/researchseries/.
Exploring genetic diversity and potential novel disease resistance genes in a collection of rice wild relatives -
Eizenga, G.C., Agrama, H.A., Lee, F.N., Jia, Y. 2009. Exploring genetic diversity and potential novel disease resistance genes in a collection of rice wild relatives. Genetic Resources and Crop Evolution. 56:65-76.
Establishment of codominant markers for rice blast resistance gene Pi-ta -
Wang, Z., Redus, M., Jia, Y. 2005. Establishment of codominant markers for rice blast resistance gene Pi-ta. Chinese Journal of Rice Science. 19:483-488.
Establishment of codominant marker for rice blast resistance gene pi-ta -
Wang, Z., Redus, M., Jia, Y. 2005. Establishment of codominant marker for rice blast resistance gene pi-ta. Chinese Journal Rice Science. 19(6):483-488.
REGISTRATION OF KATY LESION MIMIC MUTANT -
Jia, Y. 2004. Registration of Katy lesion mimic mutant. Crop Science. 45:1675.
MOLECULAR COEVOLUTION OF RICE RESISTANCE GENE PI-TA AND THE CORRESPONDING MAGNAPORTHE GRISEA AVIRULANCE GENE AVR-PITA -
Jia, Y., Winston, E.M., Singh, P., Zhou, E., Wamishe, Y., Jia, M.H., Correll, J., Rutger, J.N. 2005. Molecular coevolution of rice resistance gene pi-ta and the corresponding Magnaporthe grisea avirulance gene avr-pita [abstract]. In: Plant and Animal Genome Conference Proceedings. p. 74.
MAGNAPORTHE GRISEA RACE SHIFT FOR VIRULENCE TO THE MAJOR R GENE, PITA, IN ARKANSAS -
Lee, F.N., Cartwright, R.D., Jia, Y., Correll, J.C. 2005. Magnaporthe grisea race shift for virulence to the major R gene, Pita, in Arkansas. Proceedings Southern Region American Phytopathology Society. Abstract p. 116.
MOLECULAR MECHANISMS OF DURABLE RICE BLAST RESISTANCE -
Jia, Y., Winston, E.M., Singh, P., Zhou, E., Wamishe, Y., Jia, M.H., Correll, J. 2004. Molecular mechanisms of durable rice blast resistance [abstract]. In: Proceedings, 2nd International Rice Functional Genomics Conference, Tucson, Arizona. Abstract p. 72.
DEVELOPMENT AND CHARACTERIZATION OF RICE DELETION MUTANTS FOR FUNCTIONAL GENOMICS -
Jia, Y., Zhou, E., Lin, M.J., Rutger, J.N. 2004. Development and characterization of rice deletion mutants for functional genomics [abstract]. In: Proceedings, 2nd International Rice Functional Genomics Conference, Tucson, Arizona. Abstract p. 178.
GENOTYPING OF SELECTED RICE WILD RELATIVES (ORYZA SPP.) AND THEIR PROGENIES -
Eizenga, G.C., Agrama, H., Jia, Y., Lee, F.N. 2005. Genotyping of selected rice wild relatives (Oryza spp.) and their progenies [abstract]. Plant and Animal Genome Conference. p. 147.
DEVELOPMENT OF MOLECULAR STRATEGIES TO CONTROL RICE BLAST AND SHEATH BLIGHT DISEASES -
Jia, Y., Singh, P., Wang, Z., Winston, E.M., Wamishe, Y., Redus, M., Rutger, J.N. 2004. Development of molecular strategies to control rice blast and sheath blight diseases. Southern Association of Agricultural Scientists Bulletin of Biochemistry and Biotechnology. 17:20-34.
DNA MARKERS IDENTIFY BLAST RESISTANCE GENES AND GENOTYPE NEWLY INTRODUCED RICE GERMPLASM -
Eizenga, G.C., Lee, F.N., Jia, Y., Yan, W. 2004. DNA markers identify blast resistance genes and genotype newly introduced rice germplasm [abstract] Agronomy Abstracts. 2004 CDROM.
RELEASE OF RICE GENETIC STOCK LESION MIMIC MUTANT 1 -
Jia, Y. 2004. Release of rice genetic stock lesion mimic mutant 1. Germplasm Release. USDA-ARS.
WELCOME TO CHINESE VISITING SCIENTIST -
Jia, Y., Zhou, E. 2004. Welcome to Chinese visiting scientist. International Society Molecular Plant-Microbe Interactions Reporter. p. 2.
DEVELOPMENT AND CHARACTERIZATION OF RICE MUTANT POPULATIONS FOR FUNCTIONAL GENOMICS OF HOST-PARASITE INTERACTIONS -
Jia, Y., Rutger, J.N., Wang, Z., Singh, P., Martin, R., Pinson, S.R. 2004. Development and characterization of rice mutant populations for functional genomics of host-parasite interactions. American Phytopathological Society Annual Meeting. Phytopathology. 94(6):47.
CHARACTERIZATION OF RHIZOCTONIA SOLANI ISOLATES FROM RICE IN ARKANSAS -
Wamishe, Y.A., Jia, Y., Singh, P., Cartwright, R.D. 2004. Characterization of Rhizoctonia solani isolates from rice in Arkansas. American Phytopathological Society Annual Meeting. Phytopathology. 94(6):107.
MOLECULAR CHARACTERIZATION OF MAGNAPORTHE GRISEA AVIRULENCE AVR-PITA ALLELES IN US PATHOTYPES -
Winston, E.M., Singh, P., Correll, J., Jia, Y., Rutger, J.N. 2004. Molecular characterization of Magnaporthe grisea avirulence AVR-Pita alleles in US pathotypes. American Phytopathological Society Annual Meeting. Phytopathology. 94(6):47.
MOLECULAR EVOLUTION OF RICE PI-TA GENE AND FUNGAL MAGNAPORTHE GRISEA AVR-PITA GENE -
Jia, Y., Singh, P., Winston, E.M., Wamishe, Y., Correll, J., Valent, B. 2004. Molecular evolution of rice Pi-ta gene and fungal Magnaporthe grisea AVR-Pita gene. American Phytopathological Society Annual Meeting. Phytopathology. 94(6):47.
DEVELOPMENT OF MOLECULAR STRATEGIES TO CONTROL RICE SHEATH BLIGHT DISEASE -
Singh, P., Wamishe, Y., Eizenga, G.C., Lee, F.N., Jia, Y. 2004. Development of molecular strategies to control rice sheath blight disease. American Phytopathological Society Annual Meeting. Phytopathology. 94(6):96.
DEVELOPMENT OF A CO-DOMINANT RESISTANCE GENE MARKER BY TRI-PRIMER POLYMERASE CHAIN REACTION -
Jia, Y., Redus, M.A., Wang, Z., Rutger, J.N. 2004. Development of a co-dominant resistance gene marker by tri-primer polymerase chain reaction. Euphytica. v. 138. p. 97-105.
HOW DOES THE RICE BLAST PATHOGEN DEFEAT A RESISTANCE GENE? -
Correll, J.C., Jia, Y., Boza, E.G., Singh, P., Lee, F. 2005. How does the rice blast pathogen defeat a resistance gene? Rice Technical Working Group Meeting Proceedings. Abstract p. 104.
DEVELOPMENT OF MOLECULAR STRATEGIES TO CONTROL MAJOR RICE FUNGAL DISEASES IN THE US -
Jia, Y., Singh, P., Winston, E.M., Wamashe, Y., Correll, J., Lee, F.N., Moldenhauaer, K., Gibbons, J., Rutger, J.N. 2005. Development of molecular strategies to control major rice fungal diseases in the US [abstract]. Rice Technical Working Group Meeting Proceedings. Abstract p. 109.
MARKER ASSISTED SELECTION FOR THE RICE BLAST RESISTANCE GENE PI-TA: DEVELOPMENT AND USE OF AN IMPROVED CO-DOMINANT ANALYSIS METHOD -
Johnson, V.A., Redus, M., Gibbons, J.W., Moldenhauer, K.A., Jiang, J., Jia, Y. 2005. Marker assisted selection for the rice blast resistance gene pi-ta: development and use of an improved co-dominant analysis method [abstract]. Rice Technical Working Group Meeting Proceedings. Abstract p. 62.
MOLECULAR CHARACTERIZATION OF MAGNAPORTHE GRISEA AVIRULENCE ALLELES (AVR-PITA) IN US PATHOTYPES -
Winston, E.M., Jia, Y., Correll, J. 2005. Molecular characterization of magnaporthe grisea avirulence alleles (avr-pita) in US pathotypes. Rice Technical Working Group Meeting Proceedings. Abstract p. 110.
RICE PI-TA GENE CONFERS RESISTANCE TO TWO MAJOR PATHOTYPES OF THE RICE BLAST FUNGUS IN THE U.S. -
Jia, Y., Wang, Z., Fjellstrom, R.G., Moldenhauer, K., Flowers, C.B., Rutger, J.N. 2005. Rice pi-ta gene confers resistance to two major pathotypes of the rice blast fungus in the U.S. [abstract]. Rice Technical Working Group Meeting Proceedings. Abstract p. 84.
DEVELOPMENT OF A DETACHED LEAF INOCULATION METHOD FOR RAPID EVALUATION OF RICE CULTIVAR RESPONSE TO SHEATH BLIGHT PATHOGEN -
Singh, P., Jia, Y., Eizenga, G.C., Lee, F. 2005. Development of a detached leaf inoculation method for rapid evaluation of rice cultivar response to sheath blight pathogen. Rice Technical Working Group Meeting Proceedings. Abstract p. 117.
CLONING AND CHARACTERIZATION OF INDUCED GENES BY THE SHEATH BLIGHT PATHOGEN RHIZOCTONIA SOLANI -
Singh, P., Jia, Y., Eizenga, G.C., Lee, F. 2005. Cloning and characterization of induced genes by the sheath blight pathogen rhizoctonia solani. Rice Technical Working Group Meeting Proceedings. Abstract p. 114.
IDENTIFICATION OF DISEASE RESISTANCE IN THE ORYZA SPP. AND FOLLOWING ITS INTROGRESSION INTO CULTIVATED RICE WITH DNA MARKERS -
Eizenga, G.C., Xiang, G., Jia, Y., Lee, F. 2005. Identification of disease resistance in the Oryza spp. and following its introgression into cultivated rice with DNA markers. Rice Technical Working Group Meeting Proceedings. Abstract p. 115.
IDENTIFICATION OF BLAST RESISTANCE GENES IN INDICA RICE GERMPLASM -
Eizenga, G.C., Refeld, R., Lee, F., Emerson, M., Xiang, G., Jia, Y., Yan, W. Identification of blast resistance genes in Indica rice germplasm. Rice Technical Working Group Meeting Proceedings. Abstract. p. 70-71.
IDENTIFICATION OF BLAST RESISTANCE GENES IN RICE WILD RELATIVES (ORYZA SPP.) AND NEWLY INTRODUCED RICE (O. SATIVA) LINES -
Eizenga, G.C., Lee, F.N., Jia, Y. 2004. Identification of blast resistance genes in rice wild relatives (Oryza spp.) and newly introduced rice (O. sativa) lines. Arkansas Agricultural Experiment Station Research Series 417. p. 29-36.
RICE PI-TA GENE CONFERS RESISTANCE TO THE MAJOR PATHOTYPES OF THE RICE BLAST FUNGUS IN THE U.S. -
Jia, Y., Wang, Z., Singh, P., Redus, M., Fjellstrom, R.G., Johnson, V., Correll, J., Lee, F., Rutger, J.N. 2004. Rice Pi-ta gene confers resistance to the major pathotypes of the rice blast fungus in the U.S. [abstract]. Annual International Plant & Animal Genome Conference. Abstract P293, p. 145.
DNA MARKER IDENTTIFICATION OF ORYZA SPP. FOR INTROGRESSION OF R-GENES -
Eizenga, G.C., Xiang, G., Jia, Y., Lee, F.N. 2004. DNA marker identification of Oryza spp. for introgression of r-genes [abstract]. Annual International Plant & Animal Genome XII Conference. Available: http://www.intl-pag.org/12/abstracts/P5b_PAG12_P393_XI.html.
RICE PI-TA GENE IS CLOSELY LINKED WITH RESISTANCE TO THE MAJOR PATHOTYPES OF THE RICE BLAST FUNGUS IN THE U.S. -
Jia, Y., Wang, Z., Fjellstrom, R.G., Moldenhauer, K.A., Azam, M., Correll, J., Lee, F.N., Xia, Y., Rutger, J.N. 2004. Rice pi-ta gene is closely linked with resistance to the major pathotypes of the rice blast fungus in the U.S. Phytopathology. 94:296-301.
MARKER ASSISTED SELECTION FOR THE CONTROL OF RICE BLAST DISEASE -
Jia, Y. 2003. Marker assisted selection for the control of rice blast disease. Pesticide Outlook. 14:150-152.
CHARACTERIZATION OF ISOLATE DIVERSITY IN THE RICE SHEATH BLIGHT PATHOGEN RHIZOCTONIA SOLANI -
Jia, Y., Singh, P., Cartwright, R., Lee, F.N., Rothrock, C.S., Eizenga, G.C., Rutger, J.N. 2003. Characterization of isolate diversity in the rice sheath blight pathogen rhizoctonia solani [abstract]. American Phytopathological Society Annual Meeting. 9-2003-0294-AMA.
In vitro identification of cultivar responses to rice sheath blight pathogen Rhizoctonia solani -
Jia, Y., Singh, P., Eizenga, G.C., Lee, F.N., Cartwright, R.D. 2003. In vitro identification of cultivar responses to rice sheath blight pathogen Rhizoctonia solani. In: Norman, R.J., Meullenet, J.-F., editors. B.R. Wells Rice Research Studies 2002. Fayetteville, AR: Arkansas Agricultural Experiment Station. Series 504:229-236.
DEVELOPMENT OF RICE BLAST PI-TA RESISTANCE GENE MARKERS FOR MARKER-ASSISTED SELECTION BREEDING -
Jia, Y., Wang, Z., Redus, M.A., Singh, P., Correll, J., Lee, F.N., Valent, B., Xia, Y., Rutger, J.N. 2003. Development of rice blast pi-ta resistance gene markers for marker-assisted selection breeding [abstract]. 15th International Plant Protection Congress Proceedings. p. 262.
DEVELOPMENT AND CHARACTERIZATION OF RICE MUTANT POPULATIONS FOR FUNCTIONAL GENOMICS OF HOST-PARASITE INTERACTIONS -
Jia, Y., Wang, Z., Singh, P., Rutger, J.N., Martin, R., Pinson, S.R. 2004. Development and characterization of rice mutant populations for functional genomics of host-parasite interactions [abstract]. 15th International Plant Protection Congress Proceedings. p. 64.
Identification of blast resistance genes in rice wild relatives (Oryza spp.) and selected indica lines (o. sativa) -
Eizenga, G.C., Lee, F.N., Jia, Y. 2003. Identification of blast resistance genes in rice wild relatives (Oryza spp.) and selected indica lines (o. sativa). Arkansas Agricultural Experiment Station Research Series. 504: 27-32.
DNA POLYMORPHISMS OF THE PI-TA ALLELES IN THE RICE BLAST RESISTANT AND SUSCEPTIBLE CULTIVARS -
Rice variety improvement using marker-assisted selection -
Johnson, V.A., Gibbons, J.G., Moldenhauer, K.A., Wang, Z., Jia, Y. 2003. Rice variety improvement using marker-assisted selection. In: Norman, R.J., Meullenet, J.-F., editors. B.R. Wells Rice Research Studies 2002. Fayetteville, AR: Arkansas Agricultural Experiment Station. Series 504:66-72.
Molecular characterization of rice wild relatives (Oryza spp.) and accelerating the development of disease resistant germplasm using microsatellite markers -
Eizenga, G.C., Jia, Y. 2003. Molecular characterization of rice wild relatives (Oryza spp.) and accelerating the development of disease resistant germplasm using microsatellite markers. Plant and Animal Genome Conference Proceedings. Jan. 11-15, 2003. San Diego, CA.
THE POPULATION BIOLOGY OF THE RICE BLAST PATHOGEN MAGNAPORTHE GRISEA IN THEUNITED STATES -
UNIFORM INFECTION AND DETERMINATION OF HOST RESPONSES TO MAGNAPORTHE GRISEAON DETACHED RICE LEAVES USING SPOT INOCULATION -
USE OF DNA MARKERS TO IDENTIFY BLASTS RESISTANCE GENES IN THE WILD RELATIVES OF RICE (ORYZA SP.) -
Eizenga, G.C., Lee, F.N., Jia, Y. 2002. USE OF DNA MARKERS TO IDENTIFY BLASTS RESISTANCE GENES IN THE WILD RELATIVES OF RICE (ORYZA SP.). Arkansas Agricultural Experiment Station Research Series. Exp. Stn. Res. Ser. 495. p.19-23.
MOLECULAR AND PATHOLOGICAL CHARACTERIZATION OF THE RICE SHEATH BLIGHT PATHOGEN RHIZOCTONIA SOLANI IN ARKANSAS -
Jia, Y., Singh, P., Eizenga, G.C., Lee, F.N., Cartwright, R. 2002. MOLECULAR AND PATHOLOGICAL CHARACTERIZATION OF THE RICE SHEATH BLIGHT PATHOGEN RHIZOCTONIA SOLANI IN ARKANSAS. Arkansas Agricultural Experiment Station Research Series. Univ. of AR Ag Exp. Stn. Res. Ser. 495. pg. 148-153.
Utilizing DNA markers to further identify the blast resistance in indica rice and other Oryza spp. germplasm -
Eizenga, G.C., Lee, F.N., Jia, Y., Yan, W. 2002. Utilizing DNA markers to further identify the blast resistance in indica rice and other Oryza spp. germplasm. American Society of Agronomy Meetings. Madison, WI [CD-ROM].
Opportunities for the development of rice blast resistant cultivars/germplasm -
Jia, Y., Zhonghua, W., Singh, P., Fjellstrom, R.G., Correll, J., Lee, F.N., Eizenga, G.C., Gealy, D.R., Gibbons, J., Moldenhauer, K.A., Rutger, N., McClung, A., Marchetti, T. 2002. Opportunities for the development of rice blast resistant cultivars/germplasm [abstract]. Proceedings of the Third International Rice Blast Conference. p. 116.
Molecular,genetic, and virulence diversity of the rice blast pathogen in the United States -
Correll, J.C., Guerber, J.C., Jia, Y., Lee, F.N. 2002. Molecular,genetic, and virulence diversity of the rice blast pathogen in the United States[abstract]. Proceedings of the Third International Rice Blast Conference. p. 102.
Development and evaluation of rice breeding lines for blast resistance at Arkansas, USA -
Gibbons, J.A., Lee, F.N., Jia, Y., Eason, R. 2002. Development and evaluation of rice breeding lines for blast resistance at Arkansas, USA [abstract]. Proceedings of the Third International Rice Blast Conference. p. 113.
Analysis of AVR gene function in pathogenicity and host specificity -
Valent, B., Dalby, M., Kankanala, P., Klaahsen, D., Khang, C., Kang, S., Jia, Y., Bryan, G.T. 2002. Analysis of AVR gene function in pathogenicity and host specificity [abstract]. Proceedings of the Third International Rice Blast Conference. p. 12.
DEVELOPMENT OF THE RICE BLAST PI-TA RESISTANCE GENE DOMINANT MARKERS -
Jia, Y., Wang, Z., Singh, P. 2002. DEVELOPMENT OF THE RICE BLAST PI-TA RESISTANCE GENE DOMINANT MARKERS. Crop Science. 42:2145-2149.
MOLECULAR AND PATHOLOGICAL CHARACTERIZATION OF RICE SHEATH BLIGHT PATHOGEN ISOLATES FROM ARKANSAS USING RDNA-INTERNAL TRANSCRIBED SPACER SEQUENCES -
Singh, P., Jia, Y., Cartwright, R., Lee, F.N., Eizenga, G.C. 2003. Molecular and pathological characterization of rice sheath blight pathogen isolates from arkansas using rDNA-internal transcribed spacer sequences [abstract]. National American Phytopathology Meetings. P-2002-0676-AMA/
MOLECULAR CONTROL OF THE RICE BLAST DISEASE -
Jia, Y. 2002. Molecular control of the rice blast disease. [abstract]. National American Phytopathology Meetings. P-2002-0669-AMA.
THE RELATIONSHIP OF THE RICE BLAST RESISTANCE GENES PI-TA AND PI-TA2 -
Jia, Y., Wang, Z., Fjellstrom, R.G. 2002. The relationship of the rice blast resistance genes pi-ta and pi-ta2 [abstract]. National American Phytopathology Meetings.P. 2002-0670-AMA.
PROGRESS IN IDENTIFICATION OF DISEASE RESISTANCE IN ORYZA SPECIES ACCESSIONS -
UNDERSTANDING MOLECULAR INTERACTION MECHANISMS OF RICE WITH FUNGAL PATHOGENS -
CYTOLOGICAL AND MOLECULAR CHARACTERIZATION OF RICE SHEATH BLIGHT PATHOGEN RHIZOCTONIA SOLANI -
RICE BLAST RESISTANCE GENE PI-TA ASSISTED SELECTION FOR NEW RICE CULTIVAR DEVELOPMENT -
UNIFORM INFECTION AND DETERMINATION OF HOST RESPONSES TO MAGNAPORTHE GRISEA ON DETACHED RICE LEAVES USING SPOT INOCULATION -
RELATIONSHIP OF THE RICE BLAST RESISTANCE GENES PI-TA AND PI-TA2 -
ENHANCING DEPLOYMENT OF GENES FOR BLAST RESISTANCE: OPPORTUNITIES FROM CLONING A RESISTANCE GENE/AVIRULENCE GENE PAIR -
Valent, B., Bryan, G.T., Jia, Y., Farrall, L., Mcadams, S.A., Faulk, K.N., Levy, M. 2001. Enhancing deployment of genes for blast resistance: opportunities from cloning a resistance gene/avirulence gene pair. In: Khush, G.J., Brar, D.S., Hardy, B., editors. Rice Genetics IV. Science Publishers, Inc., Enfield, NH. p. 309-322.
UTILIZING MICROSATELLITE MARKERS TO FOLLOW THE INCORPORATION OF ORYZA SPECIES DNA INTO CULTIVATED RICE -
MOLECULAR INTERACTIONS BETWEEN THE RICE BLASE RESISTANCE GENE PI-TA AND ITSCORRESPONDING AVIRULENCE GENE -
RAPID DETERMINATION OF MAGNAPORTHE GRISEA PATHOGENECITY TOWARDS RICE -
RECEPTOR-LIGAND INTERACTIOS IN CONTROL OF RICE BLAST DISEASE -
UNDERSTANDING MOLECULAR INTERACTION MECHANISMS OF THE PI-TA RICE RESISTANCE GENE AND THE RICE BLAST PATHOGEN -
DIRECT INTERACTION OF RESISTANCE GENE AND AVIRULENCE GENE PRODUCTS CONFERS RICE BLAST RESISTANCE -
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