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United States Department of Agriculture

Agricultural Research Service

Related Topics

Edward S Buckler (Ed)
Plant, Soil and Nutrition Research
Genetics

Phone: (607) 255-4520
Fax: (607) 255-6249

Room 159
BIOTECHNOLOGY BUILDING - CORNELL UNIVERSITY
ITHACA , NY 148532901

Projects
Development and Application of Genetic, Genomic, and Bioinformatic Resources in Maize
Appropriated (D)
  Accession Number: 424894
Genomic Analysis of Plant Genetic Load and Development
Specific Cooperative Agreement (S)
  Accession Number: 423515

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Development of high-density linkage map and tagging leaf spot resistance in pearl millet using genotyping-by-sequencing markers -
Punnuri, S.M., Wallace, J.G., Knoll, J.E., Hyma, K.E., Mitchell, S.E., Buckler Iv, E.S., Varshney, R.K., Singh, B.P. 2016. Development of high-density linkage map and tagging leaf spot resistance in pearl millet using genotyping-by-sequencing markers. The Plant Genome. 9(2):1-13. doi: 10.3835/plantgenome2015.10.0106.
Sequence, assembly and annotation of the maize W22 genome -
Andorf, C.M., Ahem, K., Bai, F., Barad, O., Barbazuk, B.W., Bass, H.W., Baruch, K., Ben-Zvi, G., Buckler Iv, E.S., Bukowski, R., Davenport, R., Dooner, H.K., He Du, L., Du, C., Easterling, K.A., Gault, C.M., Guan, J., Jander, G., Jiao, Y., Koch, K., Kol, G., Kudo, T., Li, Q., Lu, F., Mayfield-Jones, D., Mei, W., McCarty, D., Portwood II, J.L., Ronen, G., Settles, M.A., Shem-Tov, D., Soifer, I., Springer, N.M., Suzuki, M., Vera, D., Vollbrecht, E., Vrebalov, J.T., Ware, D., Wimalanathan, K., Xiong, W., Brutnell, T. 2016. Sequence, assembly and annotation of the maize W22 genome. In: 58th Annual Maize Genetics Conference, March 17-20, 2016, Jacksonville, Florida. p. 91.
Genome-wide associations with flowering time in switchgrass -
Grabowski, P.P., Buckler IV, E.S., Casler, M.D. 2016. Genome-wide associations with flowering time in switchgrass [abstract]. Plant and Animal Genome XXIV. Paper No. P0001.
Expanding maize genetic resources with predomestication alleles: maize-teosinte introgression populations Reprint Icon -
Liu, Z., Cook, J., Melia-Hancock, S., Guill, K.E., Bottoms, C., Garcia, A., Ott, O., Nelson, R., Recker, J., Balint-Kurti, P.J., Larsson, S., Lepak, N.K., Buckler, E.S., Trimble, L., Tracy, W., McMullen, M.D., Flint-Garcia, S.A. 2016. Expanding maize genetic resources with predomestication alleles: maize-teosinte introgression populations. The Plant Genome. 9(1). doi:10.3835/plantgenome2015.07.0053.
Population genetics and structure of a global foxtail millet germplasm collection -
Upadhyaya, H.D., Vetriventhan, M., Deshpande, S.P., Sivasubramani, S., Wallace, J.G., Buckler IV, E.S., Hash, T.C., Ramu, P. 2015. Population genetics and structure of a global foxtail millet germplasm collection. The Plant Genome. DOI: 10.385/plantgenome2015.07.0054.
Independent molecular basis of convergent highland adaptation in maize -
Takuno, S., Ralph, P., Swarts, K.L., Elshire, R.J., Glaubitz, J.C., Buckler Iv, E.S., Hufford, M.B., Ross-Ibarra, J. 2015. Independent molecular basis of convergent highland adaptation in maize. Genetics. 200(4):1297.
Genome-environment associations in sorghum landraces predict adaptive traits -
Lasky, J.R., Upadhyaya, H.D., Ramu, P., Deshpande, S., Hash, T.C., Bonnette, J., Juenger, T., Hyma, K., Acharya, C., Mitchell, S.E., Buckler IV, E.S., Brenton, Z., Kresovich, S., Morris, G.P. 2015. Genome-environment associations in sorghum landraces predict adaptive traits. Life Science Advances. 1(6):e1400218.
Genome-wide association study of carbon and nitrogen metabolism in the maize nested association mapping population -
Zhang, N., Gibon, Y., Lepak, N.K., Pinghua, L., Dedow, L., Chen, C., So, Y., Brutnell, T., Sitt, M., Buckler Iv, E.S., Wallace, J.G., Kremling, K., Bradbury, P. 2015. Genome-wide association study of carbon and nitrogen metabolism in the maize nested association mapping population. Plant Physiology. doi: 10.1104/pp.15.0025.
High-resolution genetic mapping of maize pan-genome sequence anchors Reprint Icon -
Lu, F., Romay, M.C., Glaubitz, J.C., Bradbury, P., Elshire, R.J., Wang, T., Li, Y., Li, Y., Semagn, K., Zhang, X., Hernandez, A.G., Mikel, M.A., Soifer, I., Barad, O., Buckler IV, E.S. 2015. High-resolution genetic mapping of maize pan-genome sequence anchors. Nature Communications. 6:694.
Genome-wide association analysis based on multiple imputation with low-depth GBS data: application to biofuel traits in reed canarygrass Reprint Icon -
Ramstein, G., Lu, F., Lipka, A., Costich, D., Cherney, J., Casler, M.D., Buckler IV, E.S. 2015. Genome-wide association analysis based on multiple imputation with low-depth GBS data: application to biofuel traits in reed canarygrass. G3, Genes/Genomes/Genetics. 5(5):891-909.
Genetic mapping in grapevine using a SNP microarray: intensity values -
Myles, S., Brooks, S., Harriman, J.V., Reisch, B., Ramming, D.W., Owens, C.L., Li, L., Buckler Iv, E.S., Cadle Davidson, L.E. 2015. Genetic mapping in grapevine using a SNP microarray: intensity values. Molecular Breeding. 35:88.
Recombination in maize is stable, predictable, and associated with genetic load: a joint study of the US and Chinese maize NAM populations Reprint Icon -
Rodgers-Melnick, E., Bradbury, P., Elshire, R.J., Glaubitz, J.C., Archarya, C.B., Mitchell, S.E., Li, C., Li, Y., Buckler IV, E.S. 2015. Recombination in maize is stable, predictable, and associated with genetic load: a joint study of the US and Chinese maize NAM populations. Proceedings of the National Academy of Sciences. 112(12):3823.
Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection -
Zila, C., Ogut, F., Romay, M.C., Gardner, C.A., Buckler IV, E.S., Holland, J.B. 2014. Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection. Biomed Central (BMC) Plant Biology. 14:372.
VitisGen on the road: mapping the way to the next generation of grapes Reprint Icon -
Yang, S., Fresnedo, J., Takacs, E., Barba, P., Hyma, K., Lillis, J.A., Acharya, C., Fisher, A., Cote, L., Manns, D., Ryona, I., Gadoury, D., Seem, B., Sacks, G., Mansfield, A., Ledbetter, C.A., Luby, J., Hemstad, P., Fennell, A., Hwang, C., Walker, A., Riaz, S., Cousins, P., Londo, J.P., Buckler Iv, E.S., Mitchell, S., Schweitzer, P., Sun, Q., Cadle Davidson, L.E., Reisch, B. 2015. VitisGen on the road: mapping the way to the next generation of grapes. Annual International Plant & Animal Genome Conference. P0873: 15597.
Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches Reprint Icon -
Lipka, A.E., Lu, F., Cherney, J.H., Buckler IV, E.S., Casler, M.D., Costich, D.E. 2014. Accelerating the switchgrass (panicum virgatum L.) breeding cycle using genomic selection approaches. PLoS One. 9(11):e112227.
Genomic prediction in bi-parental tropical maize populations in water-stressed and well-watered environments using low density and GBS SNPs Reprint Icon -
Zhang, X., Perez-Rodriquez, P., Kassa, S., Beyene, Y., Babu, R., Lopez Cruz, M., San Vicente, F., Olsen, M., Buckler IV, E.S., Jannink, J., Prasanna, B.M., Crossa, J. 2014. Genomic prediction in bi-parental tropical maize populations in water-stressed and well-watered environments using low density and GBS SNPs. Heredity. 114:291-299.
A super powerful method for genome wide association study -
Wang, Q., Tian, F., Pan, Y., Buckler IV, E.S., Zhang, Z. 2014. A super powerful method for genome wide association study. PLoS One. 9(9):e107684.
Novel methods to optimize genotypic imputation for low-coverage, next-generation sequence data in crop plants -
Swarts, K., Li, H., Navarro, J., An, D., Romay, M., Hearne, S., Acharya, C., Glaubitz, J.C., Mitchell, S., Elshire, R.J., Buckler Iv, E.S., Bradbury, P. 2014. Novel methods to optimize genotypic imputation for low-coverage, next-generation sequence data in crop plants. The Plant Genome. 7(3). DOI: 10.3835/plantgenome2014.05.0023.
Insights into the effects of long-term artificial selection on seed size in maize Reprint Icon -
Hirsch, C.N., Flint Garcia, S.A., Beissinger, T.M., Eichten, S.R., Deshpande, S., Barry, K., Mcmullen, M.D., Holland, J.B., Buckler IV, E.S., Springer, N., Buell, R.C., de Leon, N., Kaeppler, S.M. 2014. Insights into the effects of long-term artificial selection on seed size in maize. Genetics. 198(1):409-421.
The genetic architecture of maize height Reprint Icon -
Peiffer, J.A., Romay, M.C., Gore, M.A., Flint Garcia, S.A., Zhang, Z., Millard, M.J., Gardner, C.A., McMullen, M.D., Holland, J.B., Bradbury, P., Buckler IV, E.S. 2014. The genetic architecture of maize height. Genetics. 196:1337-1356.
TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline -
Glaubitz, J.C., Casstevens, T.M., Lu, F., Harriman, J., Elshire, R.J., Sun, Q., Buckler Iv, E.S. 2014. TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. PLoS One. 9(2):e90346.
A modern ampelography: A genetic basis for leaf shape and venation patterning in grape Reprint Icon -
Chitwood, D.H., Ranjan, A., Martinez, C.C., Headland, L.R., Thiem, T., Kumar, R., Covington, M.F., Hatcher, T, Naylor, D.T., Zimmerman, S., Downs, N., Raymundo, N., Buckler IV, E.S., Maloof, J.N., Aradhya, M.K., Prins, B.H., Li, L., Myles, S., Sinha, N.R. 2013. A modern ampelography: A genetic basis for leaf shape and venation patterning in grape. Plant Physiology. 164(1):259-272.
Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls Reprint Icon -
Miller, A., Matasci, N., Schwaninger, H.R., Aradhya, M.K., Prins, B.H., Zhong, G., Simon, C., Buckler Iv, E.S., Myles, S. 2013. Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls. PLoS One. doi: 10.1371/journal.pone.0078680.
Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits -
Morris, G.P., Rhodes, D.H., Brenton, Z., Ramu, P., Thayil, V.L., Deshpande, S., Hash, T.C., Acharya, C., Mitchell, S.E., Buckler IV, E.S., Yu, J., Kresovich, S. 2013. Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits. Genes, Genomes, Genetics. 3(11):2085-2094.
Genomic prediction in maize breeding populations with genotyping-by-sequencing -
Crossa, J., Beyene, Y., Segman, K., Perez, P., Hickey, J.M., Chen, C., De Los Campos, G., Burgueno, J., Windhausen, V.S., Buckler IV, E.S., Jannink, J., Lopez Crua, M.A., Babu, R. 2013. Genomic prediction in maize breeding populations with genotyping-by-sequencing. Genes, Genomes, Genetics. DOI: 10.1534/g3.113.008227.
Mining conifers’ mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform -
Charles, C., Mitchell, S., Elshire, R.J., Buckler IV, E.S., El-Kassaby, Y.A. 2013. Mining conifers’ mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform. Tree Genetics and Genomes. 9(6):1537-1544.
Natural variation in maize aphid resistance is associated with 2,4-Dihydroxy-7-Methoxy-1,4-Benzoxazin-3-One Glucoside Methyltransferase activity -
Meihls, L.N., Handrick, V., Glauser, G., Barbier, H., Kaur, H., Haribal, M.M., Lipka, A.E., Gershenzon, J., Buckler IV, E.S., Erb, M., Kollner, T.G., Jander, G. 2013. Natural variation in maize aphid resistance is associated with 2,4-Dihydroxy-7-Methoxy-1,4-Benzoxazin-3-One Glucoside Methyltransferase activity. The Plant Cell. 25(6):2341-2355.
Comprehensive genotyping of the USA national maize inbred seed bank -
Romay, M.C., Millard, M.J., Glaubitz, J.C., Peiffer, J.A., Swarts, K.L., Casstevens, T.M., Elshire, R.J., Acharya, C.B., Mitchell, S.E., Flint Garcia, S.A., McMullen, M.D., Holland, J.B., Buckler IV, E.S., Gardner, C.A. 2013. Comprehensive genotyping of the US national maize inbred seed bank. Genome Biology. 14(6):1-18.
Genome-wide association study and pathway level analysis of tocochromanol levels in maize grain -
Lipka, A.E., Gore, M., Magallanes-Lundback, M., Mesberg, A., Lin, H., Tiede, T., Chen, C., Buell, R.C., Buckler IV, E.S., Rocheford, T., Dellapenna, D. 2013. Genome-wide association study and pathway level analysis of tocochromanol levels in maize grain. Genes, Genomes, Genetics. DOI: 10.1534/g3.113.006148.
The genetic architecture of maize stalk strength Reprint Icon -
Peiffer, J.A., Flint Garcia, S.A., De Leon, N.N., McMullen, M.D., Kaeppler, S.M., Buckler IV, E.S. 2013. The genetic architecture of maize stalk strength. PLoS One. 8(6):e67066. Available: http://www.plosone.org/article/info:doi/10.1371/journal.pone.0067066#pone-0067066-g005.
Diversity and heritability of the maize rhizosphere microbiome under field conditions -
Peiffer, J.A., Spor, A., Koren, O., Jin, Z., Tringe, S., Dangl, J.L., Buckler IV, E.S., Ley, R.E. 2013. Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proceedings of the National Academy of Sciences. 110(16):6548-6553.
Aluminum tolerance is associated with higher MATE1 gene copy-number in maize Reprint Icon -
Maron, L., Guimareas, C., Matias, K., Albert, P.S., Birchler, J.A., Bradbury, P., Buckler IV, E.S., Coluccio, A.E., Danilova, T.V., Kudrna, D., Magalhaes, J.V., Pineros, M., Schatz, M.C., Wing, R., Kochian, L.V. 2013. Aluminum tolerance is associated with higher MATE1 gene copy-number in maize. Proceedings of the National Academy of Sciences. 110(13):5241-5246.
Compare Identity By Sequence Relationships of the Ames Diversity Panel using TYPSimSelector [abstract] Reprint Icon -
Mauch, E., Andorf, C.M., Millard, M.J., Romay, C., Buckler Iv, E.S., Gardner, C.A., Lawrence, C.J. 2013. Compare Identity By Sequence Relationships of the Ames Diversity Panel using TYPSimSelector [abstract]. In: Maize Genetics Conference, St. Charles, IL. Mar. 14-17, 2013. p. 55.
Entering the second century of maize quantitative genetics -
Wallace, J.G., Larsson, S.J., Buckler IV, E.S. 2013. Entering the second century of maize quantitative genetics. Heredity. DOI: 10.1038/hdy.2013.6.
Lessons from dwarf8 on the strengths and weaknesses of structured association mapping Reprint Icon -
Larson, S., Lipka, A.E., Buckler IV, E.S. 2013. Lessons from dwarf8 on the strengths and weaknesses of structured association mapping. PLoS Genetics. 9(2):e1003246.
Population genomic and genome-wide association studies of agroclamatic traits in sorghum Reprint Icon -
Morris, G.P., Ramu, P., Deshpande, S.P., Hash, T.C., Shah, T., Upadhyaya, H.D., Riera-Lizarazu, O., Brown, P., Acharya, C.B., Mitchell, S.E., Harriman, J., Glaubitz, J.C., Buckler IV, E.S., Kresovich, S. 2013. Population genomic and genome-wide association studies of agroclamatic traits in sorghum. Proceedings of the National Academy of Sciences. 110(2):453-458.
Can genomics boost productivity of orphan crops? Reprint Icon -
Varshney, R.K., Ribaut, J., Buckler IV, E.S., Tuberosa, R., Rafalski, A.J., Langridge, P. 2012. Can genomics boost productivity of orphan crops?. Nature Biotechnology. 30:1172-1176.
Switchgrass genomic diversity, ploidy and evolution: novel insights from a network-based SNP discovery protocol -
Lu, F., Lipka, A.E., Glaubitz, J.C., Elshire, R., Cherney, J.H., Casler, M.D., Buckler IV, E.S., Costich, D. 2013. Switchgrass genomic diversity, ploidy and evolution: novel insights from a network-based SNP discovery protocol. PLoS Genetics. 9(1):e1003215. DOI:10.1371/journal.pgen.1003215.
PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants -
Charles, C., Declerck, G., Tian, F., Spooner, W., Mccouch, S., Buckler IV, E.S. 2012. PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants. PLoS One. 7(11): e46596.
Genetic analysis of visually scored orange kernel color in maize -
Chandler, K., Lipka, A.E., Owens, B.F., Li, H., Buckler IV, E.S., Rocheford, T., Gore, M.A. 2012. Genetic analysis of visually scored orange kernel color in maize. Crop Science. 53:189-200.
SNP discovery with EST and NextGen sequencing in switchgrass (panicum virgatum L.) Reprint Icon -
Ersoz, E.S., Wright, M.H., Pangilinan, J.L., Sheehan, M.J., Tobias, C.M., Casler, M.D., Buckler IV, E.S., Costich, D. 2012. SNP discovery with EST and NextGen sequencing in switchgrass (panicum virgatum L.). PLoS One. 7(9):e44112.
GAPIT: genome association and prediction integrated tool Reprint Icon -
Lipka, A.E., Feng, T., Wang, Q., Peiffer, J., Li, M., Bradbury, P., Gore, M.A., Buckler IV, E.S., Zhang, Z. 2012. GAPIT: genome association and prediction integrated tool. Bioinformatics. 28(18):2397-2399.
Using High-Throughput Genotyping Information for Management of a Large Maize Collection -
Gardner, C.A., Romay-Alvarez, M.C., Millard, M.J., Flint Garcia, S.A., Holland, J.B., Buckler Iv, E.S. 2012. Using High-Throughput Genotyping Information for Management of a Large Maize Collection. Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. Abstract 375-3.
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize -
Hung, H., Shannon, L.M., Tian, F., Bradbury, P., Chen, C., Flint Garcia, S.A., McMullen, M.D., Ware, D., Buckler IV, E.S., Doebley, J.F., Holland, J.B. 2012. ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. Proceedings of the National Academy of Sciences. 109:E1913–E1921.
Genic and non-genic contributions to natural variation of quantitative traits in maize Reprint Icon -
Li, X., Zhu, C., Yeh, C., Wu, W., Takacs, E.M., Petsch, K.A., Tian, F., Bai, G., Buckler Iv, E.S., Muehlbauer, G.J., Timmermans, M., Scanlon, M.J., Schnable, P.S., Yu, J. 2012. Genic and non-genic contributions to natural variation of quantitative traits in maize. Genome Research. 22:2436-2444.
Maize HapMap2 identifies extant variation from a genome in flux -
Chia, J., Song, C., Bradbury, P., Costich, D., De Leon, N., Doebley, J., Elshire, R., Gaut, B., Geller, L., Glaubitz, J., Gore, M.A., Guill, K., Holland, J., Hufford, M., Lai, J., Li, M., Liu, X., Lu, Y., McCombie, R., Nelson, R., Poland, J.A., Prasanna, B., Phyajarvi, T., Rong, T., Sekhon, R., Sun, Q., Tenaillon, M., Tian, F., Wang, J., Xu, X., Zhang, Z., Kaeppler, S.M., Ross-Ibarra, J., McMullen, M.D., Buckler IV, E.S., Zhang, G., Xu, Y., Ware, D. 2012. Maize HapMap2 identifies extant variation from a genome in flux. Nature Genetics. 40:803-807. DOI: 10.1038/ng.2313.
Comparative population genomics of maize domestication and improvement -
Hufford, M., Xu, X., Van Heerwaarden, J., Pyhajarvi, T., Chia, J., Cartwright, R., Elshire, R., Glaubitz, J., Guill, K.E., Kaeppler, S., Lai, J., Morrell, P., Shannon, L., Song, C., Springer, N., Swanson-Wagner, R., Tiffin, P., Wang, J., Zhang, G., Doebley, J., McMullen, M.D., Ware, D., Buckler IV, E.S., Yang, S., Ross-Ibarra, J. 2012. Comparative population genomics of maize domestication and improvement. Nature Genetics. 44:808-811. DOI: 10.1038/ng.2309.
Crop genomics: advances and applications -
Morrell, P.L., Buckler IV, E.S., Ross-Ibarra, J. 2011. Crop genomics: advances and applications. Nature Reviews Genetics. 13:85-96.
Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels Reprint Icon -
Cook, J.P., McMullen, M.D., Holland, J.B., Tian, F., Bradbury, P., Ross-Ibarra, J., Buckler IV, E.S., Flint-Garcia, S.A. 2012. Genetic architecture of maize kernel composition in the nested association mapping and inbred association panels. Plant Physiology. 158:824-834.
A large maize (Zea Mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome -
Ganal, M.W., Durstewitz, G., Polley, A., Berard, A., Buckler IV, E.S., Charcosset, A., Clarke, J.D., Graner, E., Mcmullen, M.D., Falque, M. 2011. A large maize (Zea Mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome. PLoS One. 6(12):e28334. DOI: 10.1371/journal.pone.0028334.
Distinct genetic architectures for male and female inflorescence traits of maize -
Brown, P.J., Upadyayula, N., Mahone, G.S., Tian, F., Bradbury, P., Myles, S., Holland, J.B., Flint Garcia, S.A., McMullen, M.D., Buckler IV, E.S., Rocheford, T.R. 2011. Distinct genetic architectures for male and female inflorescence traits of maize. PLoS Genetics. 7(11):e1002383.
The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population -
Hung, H., Browne, C.J., Guill, K.E., Coles, N., Eller, M., Garcia, A., Lepak, N.K., Melia-Hancock, S., Oropeza-Rosas, M., Salvo, S., Upadyayula, N., Buckler IV, E.S., Flint Garcia, S.A., Mcmullen, M.D., Rocheford, T., Holland, J.B. 2012. The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population. Heredity. 108:490-499.
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species Reprint Icon -
Elshire, R.J., Glaubitz, J.C., Sun, Q., Poland, J.A., Kawamoto, K., Buckler IV, E.S., Mitchell, S.E. 2011. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One. 123:307-326.
Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize Reprint Icon -
Poland, J.A., Bradbury, P., Buckler IV, E.S., Nelson, R. 2011. Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. Proceedings of the National Academy of Sciences. 108:6893-6898.
Population genetics of genomics-based crop improvement methods -
Hamblin, M., Buckler Iv, E.S., Jannink, J. 2011. Population genetics of genomics-based crop improvement methods. Trends in Genetics. 27:98-106.
Joint QTL linkage mapping for multiple-cross mating design sharing one common parent -
Li, H., Bradbury, P., Buckler IV, E.S., Ersoz, E., Wang, J. 2011. Joint QTL linkage mapping for multiple-cross mating design sharing one common parent. PLoS One. 6:e17573.
Genome-wide association study of maize identifies genes affecting leaf architecture -
Tian, F., Bradbury, P., Brown, P., Sun, Q., Flint Garcia, S.A., Rocheford, T.R., McMullen, M.D., Holland, J.B., Buckler IV, E.S. 2011. Genome-wide association study of maize identifies genes affecting leaf architecture. Nature Genetics. 43:159-162.
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population -
Kump, K., Bradbury, P., Buckler IV, E.S., Belcher, A., Oropeza-Rosas, M., Wisser, R., Zwonitzer, J., Kresovich, S., McMullen, M.D., Ware, D., Balint Kurti, P.J., Holland, J.B. 2011. Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population. Nature Genetics. 43:163-168.
Genetic structure and domestication history of the grape -
Myles, S., Boyko, A., Owens, C.L., Brown, P., Fabrizio, G., Aradhya, M.K., Prins, B.H., Reynolds, A., Chia, J., Ware, D., Bustamante, C., Buckler IV, E.S. 2011. Genetic structure and domestication history of the grape. Proceedings of the National Academy of Sciences. 10.1073/pnas.1009363108.
Fine quantitative trait loci mapping of carbon and nitrogen metabolism enzyme activities and seedling biomass in the intermated maize IBM mapping population -
Zhang, N., Gibon, Y., Gur, A., Chen, C., Lepak, N.K., Hohne, M., Zhang, Z., Kroon, D., Tschoep, H., Sitt, M., Buckler IV, E.S. 2010. Fine quantitative trait loci mapping of carbon and nitrogen metabolism enzyme activities and seedling biomass in the intermated maize IBM mapping population. Plant Physiology. 154:1753-1765.
Response-Additional Implications of Perennial Bioenergy Crops: Hydrology and Climate -
Glover, J.D., Reganold, J.P., Bell, L.W., Borevitz, J., Brummer, E.C., Buckler Iv, E.S., Cox, C.M., Cox, T.S., Crews, T.E., Culman, S.W., Dehann, L.R., Eriksson, D., Gill, B.S., Holland, J.B., Hu, F., Hulke, B.S., Ibrahim, A., Jackson, W., Jones, S.S., Murray, S.C., Paterson, A.H., Ploschuk, E., Sacks, E.J., Snapp, S., Tao, D., Van Tassel, D.L., Wade, L.J., Wyse, D.L., Xu, Y. 2010. Perennial questions of hydrology and climate - response. Science. 330:33-34.
Genome-wide and fine resolution association studies of 14 agronomic traits in rice land races -
Huang, X., Sang, T., Zhao, Q., Wei, X., Feng, Q., Zhao, Y., Li, C., Zhu, C., Lu, T., Zhang, Z., Li, M., Fan, D., Guo, Y., Wang, A., Wang, L., Deng, L., Li, W., Lu, Y., Weng, Q., Liu, K., Huang, T., Zhou, T., Jing, Y., Li, W., Zhang, L., Buckler IV, E.S., Qian, Q., Zhang, Q., Li, J., Han, B. 2010. Genome-wide and fine resolution association studies of 14 agronomic traits in rice land races. Nature Genetics. 42:961-967.
Genetic Association Mapping Identifies Single Nucleotide Polymorphisms in Genes that Affect Abscisic Acid Levels in Maize Floral Tissues During Drought -
Setter, T.L., Yan, J., Warburton, M.L., Ribaut, J., Xu, Y., Sawkins, M., Buckler, E.S., Zhang, Z., Gore, M.A. 2010. Genetic association mapping identifies single nucleotide polymorphisms in genes that affect abscisic acid levels in maize floral tissues during drought. Journal of Experimental Botany. 62:701-716. doi:10.1093/jxb/erq308.
Genome-size variation in switchgrass (Panicum virgatum): flow cytometry and cytology reveal rampant aneuploidy -
Costich, D., Friebe, B., Sheehan, M.J., Casler, M.D., Buckler IV, E.S. 2010. Genome-size variation in switchgrass (Panicum virgatum): flow cytometry and cytology reveal rampant aneuploidy. The Plant Genome. 3:130-141.
Increased Food and Ecosystem Security via Perennial Grains -
Glover, J.D., Reganold, J.P., Bell, L.W., Borevitz, J., Brummer, E.C., Buckler IV, E.S., Cox, C.M., Cox, T., Crews, T.E., Culman, S.W., Dehann, L.R., Eriksson, D., Gill, B., Holland, J.B., Hu, F.Y., Hulke, B.S., Ibrahim, A., Jackson, W., Jones, S., Murray, S., Paterson, A.H., Ploschuk, E., Sacks, E.J., Snapp, S., Tao, D.Y., Van Tassel, D., Wade, L., Wyse, D., Xu, Y. 2010. Increasing Food and Ecosystem Security through Perennial Grain Breeding. Science. 328:1638-1639
Association and linkage analysis of aluminum tolerance genes in maize -
Krill, A.M., Kirst, M., Kochian, L.V., Buckler Iv, E.S., Hoekenga, O. 2010. Association and linkage analysis of aluminum tolerance genes in maize. PLoS One. 5(4):e9958. DOI: 10.1371/journal.pone.0009958.
Rare Genetic Variation at Zea mays crtRB1 Increases B-Carotene in Maize Grain -
Yan, J., Kandianis, C.B., Haries, C.E., Bai, L., Kim, E., Yang, X., Skinner, D., Fu, Z., Mitchell, S., Li, Q., Fernandez, M., Zaharieva, M., Babu, R., Fu, Y., Palacios, N., Li, J., DellaPenna, D., Brutnell, T., Buckler, E.S., Warburton, M.L., Rocheford, T. 2010. Rare Genetic Variation at Zea mays crtRB1 Increases B-carotene in Maize Grain. Nature Genetics. 42:322-329.
Mixed linear model approach adapted for genome-wide association studies -
Zhang, Z., Ersoz, E., Lai, C., Todhunter, R., Tiwari, H.K., Gore, M.A., Bradbury, P., Yu, J., Arnett, D., Ordovas, J.M., Buckler IV, E.S. 2010. Mixed linear model approach adapted for genome-wide association studies. Nature Genetics. 42:355-360.
Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity -
Zhang, N., Gur, A., Gibbon, Y., Sulpice, R., Flint Garcia, S.A., Mcmullen, M.D., Stitt, M., Buckler IV, E.S. 2010. Genetic analysis of central carbon metabolism unveils an amino acid substitution that alters maize NAD-dependent isocitrate dehydrogenase activity. PLoS One. 5(4):e9991.
DNA Markers and Sequences Reveal Geographic Races of Reed Canarygrass (Phalaris arundinacea) -
Jakubowski, A., Casler, M.D., Denton, M., Costich, D., Buckler Iv, E.S., Phillips, M., Jackson, R., Krohn, A. 2010. DNA Markers and Sequences Reveal Geographic Races of Reed Canarygrass (Phalaris arundinacea) [abstract]. Proceedings of the 6th International Symposium on the Molecular Breeding of Forage and Turf, March 15-19, 2010, Buenos Aires, Argentina. Abstract P-44: p.98.
Rapid genomic characterization of the genus Vitis -
Myles, S., Chia, J., Hurwitz, B., Simon, C.J., Zhong, G., Buckler IV, E.S., Ware, D. 2010. Rapid genomic characterization of the genus Vitis. PLoS One. 5(1):e8219.
Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers -
Yan, J., Shah, T., Warburton, M.L., Buckler IV, E.S., McMullen, M.D., Crouch, J. 2009. Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers. PLoS One. 4:1-14.
A first generation haplotype map of maize -
Gore, M.A., Chia, J., Elshire, R.J., Sun, Q., Ersoz, E.S., Hurwitz, B.L., Peiffer, J.A., Mcmullen, M.D., Grills, G.S., Ross-Ibarra, J., Ware, D., Buckler Iv, E.S. 2009. A first generation haplotype map of maize. Science. 326(5956):1115-1117.
Software engineering the mixed model for genome-wide association studies on large samples -
Zhang, Z., Buckler IV, E.S., Casstevens, T., Bradbury, P. 2009. Software engineering the mixed model for genome-wide association studies on large samples. Briefings in Bioinformatics. 10(6):664-675.
Heterosis is Prevalent for Multiple Traits in Diverse Maize Germplasm -
Flint Garcia, S.A., Buckler IV, E.S., Tiffin, P., Ersoz, E., Springer, N.M. 2009. Heterosis is Prevalent for Multiple Traits in Diverse Maize Germplasm. PLoS One. 4:e7433.
Joint linkage association analysis of aluminum tolerance in maize -
Hoekenga, O., Buckler Iv, E.S., Kirst, M., Krill, A., Lyi, S., Magalhaes, J., Maron, L., Kochian, L.V. 2009. Joint linkage association analysis of aluminum tolerance in maize. Symposium Proceedings. Proceedings of the 7th International Symposium on Plant-Soil Interaction at Low pH, October 5-10, 2009, Guangzhou, China. p. 136-137.
Association mapping: critical considerations shift from genotyping to experimental design -
Buckler IV, E.S., Myles, S., Peiffer, J., Brown, P., Ersoz, E., Zhang, Z., Costich, D. 2009. Association mapping: critical considerations shift from genotyping to experimental design. The Plant Cell. 10.1105/tpc.109.068437.
Genetic Properties of the Maize Nested Association Mapping Population -
Mcmullen, M.D., Kresovich, S., Sanchez-Villeda, H., Bradbury, P., Li, H., Sun, Q., Flint Garcia, S.A., Thornsberry, J., Acharya, C., Bottoms, C., Brown, P., Browne, C.J., Eller, M.S., Guill, K.E., Harjes, C., Kroon, D., Lepak, N.K., Mitchell, S., Peterson, B.E., Pressoir, G., Romero, S.M., Oropeza Rosas, M., Salvo, S.A., Yates, H., Hanson, M., Jones, E., Smith, S., Glaubitz, J., Goodman, M., Ware, D., Holland, J.B., Buckler Iv, E.S. 2009. Genetic Properties of the Maize Nested Association Mapping Population. Science. 325:737-740.
The Genetic Architecture of Maize Flowering Time -
Buckler Iv, E.S., Holland, J.B., Mcmullen, M.D., Kresovich, S., Acharya, C., Bradbury, P., Brown, P., Browne, C.J., Eller, M.S., Ersoz, E., Flint Garcia, S.A., Garcia, A., Glaubitz, J.C., Goodman, M., Haries, C., Guill, K.E., Kroon, D., Larsson, S., Lepak, N.K., Li, H., Mitchell, S.E., Pressoir, G., Peiffer, J., Oropeza Rosas, M., Rocheford, T., Romay, C., Romero, S., Salvo, S.A., Sanchez Villeda, H., Sun, Q., Tian, F., Upadyayula, N., Ware, D., Yates, H., Yu, J., Zhang, Z. 2009. The Genetic Architecture of Maize Flowering Time. Science. 325(5941):714-718.
Status and Prospects of Association Mapping in Plants -
Buckler Iv, E.S., Gore, M., Zhu, C., Yu, J. 2009. Status and Prospects of Association Mapping in Plants. The Plant Genome. 1(1):5-20.
Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10 -
Buckler IV, E.S., Tian, F., Stevens, N.M. 2009. Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10. Proceedings of the National Academy of Sciences. 106:9979-9986
Applications of Linkage Disequilibrium and Association Mapping in Maize -
Buckler Iv, E.S., Ersoz, E.S., Jianming, Y. 2009. Applications of Linkage Disequilibrium and Association Mapping in Maize. In: A.L. Kriz, B.A. Larkins, editors. Molecular Genetic Approaches to Maize Improvement, New York, NY: Springer-Verlag Berlin Heidelberg. p. 173.
Discovery and mapping of single feature polymorphisms in wheat using affymetrix arrays -
Bernardo, A.N., Bradbury, P., Ma, H., Hu, S., Bowden, R.L., Buckler Iv, E.S., Bai, G. 2009. Discovery and mapping of single feature polymorphisms in wheat using affymetrix arrays. Biomed Central (BMC) Genomics. 10:251.
Large-scale enrichment and discovery of gene-associated SNPs -
Buckler Iv, E.S., Gore, M., Wright, M., Ersoz, E., Bouffard, P., Jarvie, T., Hurwitz, B., Narechania, A., Harkins, T., Grills, G., Ware, D. 2009. Large-scale enrichment and discovery of gene-associated SNPs. The Plant Genome. 2:121-133.
Simulation appraisal of the adequacy of numbers of background markers for relationship estimation in association mapping -
Buckler Iv, E.S., Yu, J., Zhang, Z., Tabanao, D.A., Gail, P., Kresovich, S., Todhunter, R.J. 2009. Simulation appraisal of the adequacy of numbers of background markers for relationship estimation in association mapping. The Plant Genome. 2:63-77.
Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2 -
Pressoir, G., Brown, P.J., Zhu, W., Upadyayula, N., Rocheford, T., Buckler IV, E.S., Kresovich, S. 2009. Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2. Plant Journal. 58:618-628.
Panzea: An Update on New Content and Features -
Canaran, P., Buckler Iv, E.S., Glaubitz, J., Stein, L., Sun, Q., Zhao, W., Ware, D. 2009. Panzea: An Update on New Content and Features. Nucleic Acids Research. 36:D1041-D1043.
Empirical Comparison of Simple Sequence Repeats and Single Nucleotide Polymorphisms in Assessment of Maize Diversity and Relatedness -
Buckler Iv, E.S., Hamblin, M.T., Warburton, M.L. 2008. Empirical Comparison of Simple Sequence Repeats and Single Nucleotide Polymorphisms in Assessment of Maize Diversity and Relatedness. PLoS One. 2(12):e1367.
The Genetic Architecture of Complex Traits in Teosinte (Zea mays ssp. parviglumis): New Evidence from Association Mapping -
Buckler Iv, E.S., Weber, A.L., Briggs, W.H., Rucker, J., Baltazar, B.M., Sanchez-Gonzalez, J.D., Feng, P., Doebley, J.F. 2008. The Genetic Architecture of Complex Traits in Teosinte (Zea mays ssp.parviglumis): New Evidence from Association Mapping. Genetics. 180(2):1221-1232.
An Arabidopsis haplotype map takes root -
Buckler Iv, E.S., Gore, M. 2008. An Arabidopsis haplotype map takes root. Nature Genetics.39:1056-1057.
Comparison of Mixed-Model Approaches for Association Mapping -
Stich, B., Mohring, J., Piepho, H., Heckenberger, M., Buckler Iv, E.S., Melchinger, A.E. 2008. Comparison of Mixed-Model Approaches for Association Mapping. Genetics. 178(3):1748-1754.
Natural genetic variation in the lycopene epsilon cyclase gene can enhance provitamin A biofortification of maize -
Buckler Iv, E.S., Harjes, C., Rocheford, T., Bai, L., Brutnell, T., Kandianis, C.B., Sowinski, S.G., Stapleton, A.E., Vallabhaneni, R., Williams, M., Wurtzel, E., Jianbing, Y. 2008. Natural genetic variation in the lycopene epsilon cyclase gene can enhance provitamin A biofortification of maize. Science. 319(5861):330-333.
GENOME-WIDE COMPLEX TRAIT DISSECTION THROUGH NESTED ASSOCIATION MAPPING -
Buckler Iv, E.S., Yu, J., Holland, J.B., Mcmullen, M.D. 2008. Genome-wide complex trait dissection through nested association mapping. Genetics. 178:539-551.
Genetic and biochemical analysis of iron bioavailability in maize -
Hoekenga, O., Mwaniki, A., Buckler Iv, E.S., Glahn, R.P., Kochian, L.V. 2007. Genetic and biochemical analysis of iron bioavailability in maize (abstract). Agronomy Society of America, Crop Science Society of America, Soil Science Society of America Meeting. Session 176:4
Genetic and biochemical analysis of iron bioavailability in maize -
Hoekenga, O., Mwankini, A., Buckler Iv, E.S., Glahn, R.P., Kochian, L.V. 2007. Genetic and biochemical analysis of iron bioavailability in maize. American Society of Agronomy Meetings. Volume 52:102.
Gramene: a growing plant comparative genomics resource -
Jaiswal, P., Avraham, S., Buckler Iv, E.S., Casstevens, T., Hebbard, C., Liang, C., Ni, J., Ravenscroft, D., Ren, L., Stein, L., Spooner, W., Tecle, I., Thomason, J., Wei Xuehong, Ware, D., Youens-Clark, K., Yap, I., Mccouch, S., Tung, C. 2008. Gramene: a growing plant comparative genomics resource. Nucleic Acids Research. 36:D947-D953.
Using Crossover Breakpoints in Recombinant Inbred Lines to Identify Quantitative Trait Loci Controlling the Global Recombination Frequency -
Buckler Iv, E.S., Esch, E., Szymaniak, J., Yates, H., Wojciech, P. 2007. Using Crossover Breakpoints in Recombinant Inbred Lines to Identify Quantitative Trait Loci Controlling the Global Recombination Frequency. Genetics. 177:1851-1858.
TASSEL: Software for Association Mapping of Complex Traits in Diverse Samples -
Bradbury, P., Zhang, Z., Kroon, D., Casstevens, T., Ramdoss, Y., Buckler Iv, E.S. 2007. Tassel: software for association mapping of complex traits in diverse samples. Bioinformatics. 23:2633-2635.
Gramene: a bird's eye view of cereal genomes -
Jaiswal, P., Ni, J., Yap, I., Ware, D., Spooner, W., Youens-Clark, K., Ren, L., Liang, C., Zhao, W., Ratnapu, K., Faga, B., Canaran, P., Fogleman, M., Hebbard, C., Avraham, S., Schmidt, S., Casstevens, T., Buckler Iv, E.S., Stein, L., Mccouch, S. 2007. Gramene: a bird's eye view of cereal genomes. Nucleic Acids Research. 34:D717-D723. Available: http://nar.oxfordjournals.org/
Evaluation of Target Preparation Methods for Single Feature Polymorphism Detection in Large Complex Plant Genomes -
Gore, M., Bradbury, P., Hogers, R., Kirst, M., Verstege, E., Van Oeveren, J., Peleman, J., Buckler Iv, E.S., Van Eijk, M. 2007. Evaluation of Target Preparation Methods for Single Feature Polymorphism Detection in Large Complex Plant Genomes. Crop Science. 47:S135-S148.
APPLICATIONS OF LINKAGE DISEQUILIBRIUM AND ASSOCIATION MAPPING IN CROP PLANTS -
Buckler Iv, E.S., Ersoz, E., Yu, J. 2007. Applications of linkage disequilibrium and association mapping in crop plants. Book Chapter. In: Genomics Assisted Crop Improvement Vol. 1: Genomics Approaches and Platforms, R.K. Varshney and R. Ruberosa, editors. pp 97-119. Publisher: Springer, Dordrecht, The Netherlands
Panzea: A Database and Resource for Molecular and Functional Diversity in the Maize Genome -
Zhao, W., Canaran, P., Jurkuta, R., Fulton, T., Glaubitz, J., Buckler Iv, E.S., Doebley, J., Gaut, B., Goodman, M., Holland, J.B., Kresovich, S., Mcmullen, M.D., Stein, L., Ware, D. 2007. Panzea: A Database and Resource for Molecular and Functional Diversity in the Maize Genome. Nucleic Acids Research. 34:D752-D757.
POWER TO DETECT HIGHER-ORDER EPISTATIC INTERACTIONS IN A METABOLIC PATHWAY USING NESTED ASSOCIATION MAPPING AND DIALLEL ASSOCIATION MAPPING -
Buckler Iv, E.S., Stich, B., Yu, J., Maurer, H.P., Melchinger, A.E., Utz, H. 2007. Power to detect higher-order epistatic interactions in a metabolic pathway using nested association mapping and diallel association mapping. Genetics. Vol. 176:563-570
Joint linkage-association analysis of aluminum tolerance in maize -
Hoekenga, O., Buckler Iv, E.S., Maron, L., Magalhaes, J., Kirst, M., Krill, A., Lyi, M., Rose, J., Thannhauser, T.W., Kochian, L.V. 2007. Joint linkage-association analysis of aluminum tolerance in maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 55.
Technical note: Use of marker-based relationships with multiple-trait derivative-free restricted maximal likelihood -
Zhang, Z., Todhunter, R.J., Buckler Iv, E.S., Van Vleck, L.D. 2007. Technical note: Use of marker-based relationships with multiple-trait derivative-free restricted maximal likelihood. Journal of Animal Science. 85:881-885.
CONTRIBUTION OF GENETIC DIVERSITY TO TYPE I ERRORS IN SHORT-OLIGONUCLEOTIDE MICROARRAY ANALYSIS -
Kirst, M., Caldo, R., Casati, P., Tanimoto, G., Walbot, V., Wise, R.P., Buckler Iv, E.S. 2006. Contribution of genetic diversity to type 1 errors in short-oligonucleotide microarray analysis. Plant Biotechnology Journal. 4:489-498.
RECURRENT MUTATION AND GENOME EVOLUTION: EXAMPLE OF SUGARY1 AND THE ORIGIN OF SWEET MAIZE -
Tracy, W.F., Whitt, S.R., Buckler Iv, E.S. 2006. Recurrent mutation and genome evolution: example of sugary1 and the origin of sweet maize. The Plant Genome. 1:1-6.
GENETIC ASSOCIATION MAPPING AND GENOME ORGANIZATION OF MAIZE -
Yu, J., Buckler Iv, E.S. 2006. Genetic association mapping and genome organization of maize. Current Opinion in Biotechnology. 17:155-160.
MOLECULAR AND FUNCTIONAL DIVERSITY OF MAIZE -
Buckler Iv, E.S., Gaut, B.S., Mcmullen, M.D. 2006. Molecular and functional diversity of maize. Current Opinion in Plant Biology. 9:172-176.
INTERDISCIPLINARY ANALYSIS OF ALUMINUM TOLERANCE IN MAIZE -
Hoekenga, O., Buckler Iv, E.S., Maron, L., Magalhaes, J., Isaacson, T., Kirst, M., Krill, A., Lyi, S.M., Rose, J., Thannhauser, T.W., Kochian, L.V. 2006. Interdisciplinary analysis of aluminum tolerance in maize [abstract]. Plant and Animal Genome VX Conference Abstracts. p. 226.
ARCHITECTURE OF FLORAL BRANCH SYSTEMS IN MAIZE AND RELATED GRASSES -
Vollbrecht, E., Springer, P.S., Goh, L., Buckler Iv, E.S., Martienssen, R. 2005. Architecture of floral branch systems in maize and related grasses. Nature. 436:1119-1126.
A UNIFIED MIXED-MODEL METHOD FOR ASSOCIATION MAPPING ACCOUNTING FOR MULTIPLE LEVELS OF RELATEDNESS -
Yu, J., Pressoir, G., Briggs, W., Vroh, B., Yamasaki, M., Doebley, J.F., Mcmullen, M.D., Gaut, B.S., Holland, J.B., Kresovich, S., Buckler Iv, E.S. 2006. A unified mixed-model method for association mapping accounting for multiple levels of relatedness. Nature Genetics. 38:203-208.
MAIZE ASSOCIATION POPULATION: A HIGH RESOLUTION PLATFORM FOR QUANTITATIVE TRAIT LOCUS DISSECTION -
Flint Garcia, S.A., Thuillet, A., Yu, J., Pressoir, G., Romero, S.M., Mitchell, S.E., Doebley, J., Kresovich, S., Goodman, M.M., Buckler Iv, E.S. 2005. Maize association population: a high resolution platform for quantitative trait locus dissection. Plant Journal. 44:1054-1064.
BRIDGING MOLECULAR DIVERSITY AND FUNCTIONAL DIVERSITY: COMPLEX TRAITS DISSECTION IN MAIZE -
Yu, J., Pressoir, G., Holland, J.B., Kresovich, S., Buckler Iv, E.S. 2005. Bridging molecular diversity and functional diversity: complex traits dissection in maize. Agronomy Abstracts.
ASSOCIATION ANALYSIS OF CANDIDATE GENES FOR MAYSIN AND CHLOROGENIC ACID ACCUMULATION IN MAIZE SILKS -
Szalma, S.J., Buckler Iv, E.S., Snook, M.E., Mcmullen, M.D. 2005. Association analysis of candidate genes for maysin and chlorogenic acid accumulation in maize silks. Journal of Theoretical and Applied Genetics. 110(7):1324-1333.
GENETIC DIVERSITY AND POPULATION STRUCTURE OF TEOSINTE -
Fukunaga, K., Hill, J., Vigouroux, Y., Matsuoka, Y., G, J.S., Liu, K., Buckler Iv, E.S., Doebley, J. 2005. Genetic diversity and population structure of teosinte. Genetics. 169:2241-2254.
THE COLLABORATIVE CROSS, A COMMUNITY RESOURCE FOR THE GENETIC ANALYSIS OF COMPLEX TRAITS -
Churchill, G.A., Airey, D.C., Allayee, H., Angel, J.M., Attie, A.D., Beatty, J., Beavis, W.D., Belknap, J.K., Bennett, B., Buckler Iv, E.S., 2005. The collaborative cross, a community resource for the genetic analysis of complex traits. Nature Genetics. 36(11):1133-1137.
MOLECULAR AND FUNCTIONAL DIVERSITY IN THE MAIZE GENOME -
Doebley, J., Buckler Iv, E.S., Fulton, T., Gaut, B., Goodman, M., Holland, J.B., Kresovich, S., Mcmullen, M., Stein, L., Ware, D., Zhao, W. 2005. Molecular and functional diversity in the maize genome. Plant and Animal Genome XIII. [Abstracts].
MOLECULAR AND FUNCTIONAL DIVERSITY IN THE MAIZE GENOME -
Briggs, W., Buckler Iv, E.S., Canaran, P., Doebley, J., Fulton, T., Gaut, B., Goodman, M., Holland, J.B., Kresovich, S., Mcmullen, M.D., Stein, L., Ware, D., Wright, S., Zhao, W. 2005. Molecular and functional diversity in the maize genome [abstract]. Maize Genetics Conference. Paper No. 177. p. 126.
SNP GENOTYPING FOR DIVERSITY AND MAPPING STUDIES IN MAIZE AND TEOSINTE -
Briggs, W., Vroh, B., Yamasaki, M., Pressoir, G., Mcmullen, M.D., Gaut, B., Kresovich, S., Buckler Iv, E.S., Doebley, J. 2005. Snp genotyping for diversity and mapping studies in maize and teosinte [abstract]. Maize Genetics Conference. Paper No. 182. p. 129.
DISSECTION OF MAIZE KERNEL COMPOSITION AND STARCH PRODUCTION BY CANDIDATE GENE ASSOCIATION -
Wilson, L.M., Whitt, S.R., Ibanez, A.M., Rocheford, T.R., Goodman, M.M., Buckler Iv, E.S. 2004. Dissection of maize kernel composition and starch production by candidate gene association. The Plant Cell. 16:2719-2733.
PHYLOGEOGRAPHY OF THE WILD SUBSPECIES OF ZEA MAYS -
Buckler Iv, E.S., Goodman, M.M., Holtsford, T.P., Doebley, J.F., G, J.S. 2006. Phylogeography of the wild subspecies of zea mays. Maydica. 51:123-134.
GDPC: THE GENOMIC DIVERSITY AND PHENOTYPE CONNECTION -
Casstevens, T.M., Buckler Iv, E.S. 2004. GDPC: The Genomic Diversity and Phenotype Connection. Bioinformatics. 20:2839-2840.
DARWIN'S HARVEST: NEW APPROACHES TO THE ORIGINS, EVOLUTION, AND CONSERVATION OF CROPS -
Buckler Iv, E.S., Stevens, N.M. 2006. Darwin's harvest: new approaches to the origins, evolution, and conservation of crops. In: Motley, T.J., Zerega, N., Cross, H. (eds.) Maize Origins, Domestication, and Selection. New York: Columbia University Press. p. 67-90.
GENETIC STRUCTURE AND DIVERSITY AMONG MAIZE INBRED LINES AS INFERRED FROM DNA MICROSATELLITES -
Liu, K., Goodman, M., Muse, S., Smith, J.S., Buckler Iv, E.S., Doebley, J. 2003. Genetic structure and diversity among maize inbred lines as inferred from dna microsatellites. Genetics. 165:2117-2128.
A BRIEF INTRODUCTION TO THE PHYLOGENETIC ANALYSIS LIBRARY, VERSION 1.5 -
Goode, M., Strimmer, K., Drummond, A., Buckler Iv, E.S., Rodrigo, A. 2004. A brief introduction to the phylogenetic analysis library, version 1.5. Conferences in Research and Practice in Information Technology. 29:175-179.
EARLY ALLELIC SELECTION IN MAIZE AS REVEALED BY ANCIENT DNA -
JAENICKE, V., BUCKLER IV, E.S., SMITH, B.D., GILBERT, T.P., COOPER, A., DOEBLEY, J., PAABO, S. EARLY ALLELIC SELECTION IN MAIZE AS REVEALED BY ANCIENT DNA. SCIENCE. 2003. v. 302. p. 1206-1208.
STRUCTURE OF LINKAGE DISEQUILIBRIUM IN PLANTS -
FLINT-GARCIA, S.A., THORNSBERRY, J.M., BUCKLER IV, E.S. STRUCTURE OF LINKAGE DISEQUILIBRIUM IN PLANTS. ANNUAL REVIEWS OF PLANT BIOLOGY. 2003. v. 54. p. 357-374.
DEVELOPMENT OF A MAIZE MOLECULAR EVOLUTIONARY GENOMIC DATABASE -
DU, C., BUCKLER IV, E.S., MUSE, S. DEVELOPMENT OF A MAIZE MOLECULAR EVOLUTIONARY GENOMIC DATABASE. COMPARATIVE AND FUNCTIONAL GENOMICS. 2003. v. 4. p. 246-249.
USING NATURAL ALLELIC DIVERSITY TO EVALUATE GENE FUNCTION. -
ASSOCIATIONS BETWEEN GLOSSY15 POLYMORPHISMS AND VARIATION IN JUVENILE LEAF NUMBER -
LIU, D., FROST, J., SZALMA, S., ANDALUZ, S., MUSKET, T., BUCKLER IV, E.S., MCMULLEN, M.D., DAVIS, G. ASSOCIATIONS BETWEEN GLOSSY15 POLYMORPHISMS AND VARIATION IN JUVENILE LEAF NUMBER. MAIZE GENETICS CONFERENCE. 2002. ABSTRACT. P. 118.
MAIZE DOMESTICATION AND DIVERSIFICATION INFERRED FROM MICROSATELLITE DNA -
PLANT MOLECULAR DIVERSITY AND APPLICATIONS TO GENOMICS -
STRUCTURE OF LINKAGE DISEQUILIBRIUM AND PHENOTYPIC ASSOCIATIONS IN THE MAIZE GENOME. -
MOLECULAR DIVERSITY, STRUCTURE AND DOMESTICATION OF GRASSES -
DWARF8 POLYMORPHISMS ASSOCIATE WITH VARIATION IN FLOWERING TIME. -
QUANTITATIVE TRAIT LOCI ANALYSIS OF GROWTH RESPONSE TO VARYING NITROGEN SOURCES IN ARABIDOPSIS THALIANA. -
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