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United States Department of Agriculture

Agricultural Research Service

Research Project: ALLIUM, CUCUMIS, AND DAUCUS GERMPLASM ENHANCEMENT, GENETICS, AND BIOCHEMISTRY Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus)     Reprint Icon - (Peer Reviewed Journal)
Schmaelzle, S., Gannon, B., Crawford, S., Arscott, S.A., Goltz, S., Palacios-Rojas, N., Pixley, K.V., Simon, P.W., Tanumihardjo, S.A. 2014. Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus). Journal of Agricultural and Food Chemistry. 62(1):136-143.
Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot     Reprint Icon - (Peer Reviewed Journal)
Ali, A., Mathews, W.C., Cavagnaro, P.F., Iorizzo, M., Roberts, P.A., Simon, P.W. 2014. Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot. Journal of Heredity. 105(2):288-291.
Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot     Reprint Icon - (Peer Reviewed Journal)
Bowman, M.J., Willis, D.K., Simon, P.W. 2014. Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot. Journal of the American Society for Horticultural Science. 139(1):63-68.
Transcriptomics of induced defense responses to greenbug aphid feeding in near isogenic wheat lines     Reprint Icon - (Peer Reviewed Journal)
Reddy, S.K., Weng, Y., Rudd, J.C., Akhunova, A., Liu, R.S. 2013. Transcriptomics of induced defense responses to greenbug aphid feeding in near isogenic wheat lines. Plant Science. 212:26-36.
DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic     Reprint Icon - (Peer Reviewed Journal)
Macko-Podgorni, A., Nowicka, A., Grzebelus, E., Simon, P.W., Grzebelus, D. 2013. DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic. Genetica. 141(4-6):255-267.
Single nucleotide polymorphisms in linkage disequilibrium with the male-fertility restoration (Ms) locus in open-pollinated and inbred populations of onion - (Peer Reviewed Journal)
Havey, M.J. 2013. Single nucleotide polymorphisms in linkage disequilibrium with the male-fertility restoration (Ms) locus in open-pollinated and inbred populations of onion. Journal of the American Society for Horticultural Science. 138(4):306-309.
Fine mapping of the pleiotropic locus B for black spine and orange mature fruit color in cucumber identifies a 50 kb region containing a R2R3-MYB transcription factor     Reprint Icon - (Peer Reviewed Journal)
Li, Y., Wen, C., Weng, Y. 2013. Fine mapping of the pleiotropic locus B for black spine and orange mature fruit color in cucumber identifies a 50 kb region containing a R2R3-MYB transcription factor. Theoretical and Applied Genetics. 126(8):2187-2196.
Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project - (Abstract Only)
Simon, P.W., Navazio, J.P., Colley, M., Hoagland, L., Roberts, P.A., Du Toit, L., Waters, T., Silva, E., Colquhoun, J., Nunez, J., Mccluskey, C. 2013. Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project [abstract]. American Society for Horticultural Science. Paper No. 079.
QTL mapping of powdery mildew resistance in WI 2757 cucumber (Cucumis sativus L) - (Peer Reviewed Journal)
He, X., Li, Y., Pandey, S., Yandell, B.S., Pathak, M., Weng, Y. 2013. QTL mapping of powdery mildew resistance in WI 2757 cucumber (Cucumis sativus L). Theoretical and Applied Genetics. 126(8):2149-2161.
Transcriptome sequencing to produce SNP-based genetic maps of onion     Reprint Icon - (Peer Reviewed Journal)
Duangjit, J., Bohanec, B., Chan, A.P., Town, C.T., Havey, M.J. 2013. Transcriptome sequencing to produce SNP-based genetic maps of onion. Theoretical and Applied Genetics. 126(8)2093:2101.
Expression and mapping of anthocyanin biosynthesis genes in carrot     Reprint Icon - (Peer Reviewed Journal)
Yildiz, M., Willis, D.K., Cavagnaro, P.F., Iorizzo, M., Abak, K., Simon, P.W. 2013. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 126(7):1689-1702.
Genetic structure and domestication of carrot (Daucus carota subsp. sativus)(Apiaceae)     Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Senalik, D.A., Ellison, S., Grzebelus, D., Cavagnaro, P., Allender, C., Brunet, J., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae). American Journal of Botany. 100(5):930-938.
A 1,681-Locus Consensus Genetic Map of Cultivated Cucumber Including 67 Nb-Lrr Resistance Gene Homolog and Ten Gene Loci     Reprint Icon - (Peer Reviewed Journal)
Yang, L., Li, D., Li, Y., Gu, X., Huang, S., Garcia-Mas, J., Weng, Y. 2013. A 1,681-locus consensus genetic map of cultivated cucumber including 67 NB-LRR resistance gene homolog and ten gene loci. Biomed Central (BMC) Plant Biology. 13(53):1-14.
Onions showing reduced damage by thrips and iris yellow spot virus - (Trade Journal)
Havey, M.J., Cramer, C., Pappu, H., Schwartz, H. 2013. Onions showing reduced damage by thrips and iris yellow spot virus. Onion World. 29(2):14.
Whole genome sequencing of a begomovirus-resistant tomato inbred reveals introgressions from wild Solanum species - (Abstract Only)
Menda, N., Strickler, S., Edwards, J., Bombarely, A., Mejia, L., Hutton, S.F., Scott, J.W., Havey, M.J., Maxwell, D.P., Mueller, L.A. 2013. Whole genome sequencing of a begomovirus-resistant tomato inbred reveals introgressions from wild Solanum species [abstract]. Tomato Breeders Roundtable Proceedings. Paper No. S11-3.
Transcriptome sequencing to produce SNP-based genetic maps of onion - (Abstract Only)
Duangjit, J., Bohanec, B., Town, C., Chan, A., Havey, M.J. 2013. Transcriptome sequencing to produce SNP-based genetic maps of onion [abstract]. Plant and Animal Genome. Paper No. P048.
Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR     Reprint Icon - (Peer Reviewed Journal)
Bowman, M.J., Simon, P.W. 2013. Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR. Plant Molecular Biology Reporter. 31(4):1040-1047.
Comparative transcriptomics involving greenbug and water-deficit stress responses in hard-red winter wheat - (Abstract Only)
Reddy, S.K., Liu, S., Akhunova, A., Weng, Y., Rudd, J., Xue, Q., Payton, P.R., Mahan, J.R. 2013. Comparative transcriptomics involving greenbug and water-deficit stress responses in hard-red winter wheat [abstract]. Plant and Animal Genome Conference. Paper No. P0787.
Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome     Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Grzebelus, D., Senalik, D.A., Szklarczyk, M., Spooner, D.M., Simon, P.W. 2012. Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome. Mobile Genetic Elements. 2(6):261-266.
Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) - (Abstract Only)
Ellison, S.L., Iorizzo, M., Senalik, D.A., Simon, P.W. 2013. Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0698.
Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) - (Abstract Only)
Iorizzo, M., Senalik, D.A., Ellison, S.L., Grzebelus, D., Cavagnaro, P., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0762.
Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) - (Abstract Only)
Grzebelus, D., Baranski, R., Iorizzo, M., Senalik, D.A., Ellison, S.L., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Simon, P.W. 2013. Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0697.
Next-generation sequencing reveals deletions in mitochondrial mutants - (Abstract Only)
Del Valle-Echevarria, A.R., Havey, M.J. 2012. Next-generation sequencing reveals deletions in mitochondrial mutants [abstract]. Plant and Animal Genome Conference. P0242.
Breeding and genomics of vegetable crops for climate-resilience traits - (Book / Chapter)
(20-Oct-12)
Ensuring US onion sustainability: Breeding and genomics to control thrips and iris yellow spot virus - (Abstract Only)
Havey, M.J., Cramer, C.S., Pappu, H., Schwartz, H., Chan, A., Town, C. 2012. Ensuring US onion sustainability: Breeding and genomics to control thrips and iris yellow spot virus [abstract]. National Allium Research Conference. Paper No. O-21.
An international plan to sequence the nuclear genome of onion - (Abstract Only)
Havey, M.J. 2012. An international plan to sequence the nuclear genome of onion [abstract]. National Allium Research Conference. Paper No. O-23.
Transcriptome sequencing to produce a SNP-based genetic map of onion - (Abstract Only)
Duangjit, J., Bonanec, B., Chan, A., Town, C., Havey, M.J. 2012. Transcriptome sequencing to produce a SNP-based genetic map of onion. Slovenian Genetics Society Meeting. p. 45.
Molecular mapping of vernalization requirement and fertility restoration genes in carrot     Reprint Icon - (Peer Reviewed Journal)
Alessandro, M.S., Galamarini, C.R., Iorizzo, M., Simon, P.W. 2013. Molecular mapping of vernalization requirement and fertility restoration genes in carrot. Theoretical and Applied Genetics. 126(2):415-423.
Genetic diversity and population structure of cucumber (Cucumis sativus L.) - (Peer Reviewed Journal)
Lu, J., Qi, J.J., Shi, Q.X., Shen, D., Zhang, S.P., Shao, G.I., Li, H., Sun, Z.Y., Weng, Y., Shang, Y., Van Treuren, R., Van Dooijeweert, W., Zhang, Z.H., Huang, S.W. 2012. Genetic diversity and population structure of cucumber (Cucumis sativus L.). PLoS One. Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0046919.
Genetic variation for epicuticular waxes in onion: a thrips-avoidance mechanism - (Abstract Only)
Damon, S., Havey, M.J. 2012. Genetic variation for epicuticular waxes in onion: a thrips-avoidance mechanism [abstract]. National Association of Plant Breeders 2nd Annual Meeting. p. 21.
Genotypic variation in sulfur assimilation and metabolism of onion (Allium cepa L.) III. Characterization of sulfite reductase - (Peer Reviewed Journal)
McManus, M.T., Joshi, S., Leung, S., Albert, N., Pither-Joyce, M., Shaw, M., Mccallum, J., Searle, B., Shigyo, M., Jakse, J., Havey, M.J. 2012. Genotypic variation in sulfur assimilation and metabolism of onion (Allium cepa L.) III. Characterization of sulfite reductase. Phytochemistry. 83:34-42.
The genome of melon (Cucumis melo L.). Genome amplification in the absence of recent duplication in an old widely cultivated species - (Peer Reviewed Journal)
Garcia-Mas, J., Benjak, A., Sanserverino, W., Bourgeois, M., Mir, G., Gonzalez, V.M., Henaff, E., Camara, L., Cozzuto, L., Lowy, E., Alioto, T., Capella-Gutierrez, S., Blanca, J., Canizares, J., Ziarsolo, P., Gonzalez-Ibeas, D., Rodriguez-Moreno, L., Droege, M., Du, L., Alvarez-Tejado, M., Lorente-Galos, B., Mele, M., Yang, L., Weng, Y., Navarro, A., Marques-Bonet, T., Aranda, M.A., Nuez, F., Pico, B., Gabaldon, T., Roma, G., Guigo, R., Casacuberta, J.M., Arus, P., Puigdomenech, P. 2012. The genome of melon (Cucumis melo L.). Genome amplification in the absence of recent duplication in an old widely cultivated species. Proceedings of the National Academy of Sciences. 109(29):11872-11877.
Chromosome rearrangements during domestication of cucumber as revealed from high-density genetic mapping and draft genome assembly - (Peer Reviewed Journal)
Weng, Y., Yang, L., Koo, D., Li, Y., Xuejiao, Z., Luan, F., Havey, M.J., Jiang, J. 2012. Chromosome rearrangements during domestication of cucumber as revealed from high-density genetic mapping and draft genome assembly . Plant Journal. 71:895-906.
Reflections from 20 years of onion breeding and genetics: Where do we go next? - (Abstract Only)
Havey, M.J. 2012. Reflections from 20 years of onion breeding and genetics: Where do we go next [abstract]. 6th International Symposium on Edible Alliaceae. Paper No. I-04.
De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome     Reprint Icon - (Peer Reviewed Journal)
Simon, P.W., Iorizzo, M., Senalik, D.A., Szklarczyk, M., Grzebelus, D., Spooner, D.M. 2012. De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. Biomed Central (BMC) Plant Biology. 12:1-17.
In vitro culture of cucumber microspores - (Research Notes)
Kielkowska, A., Havey, M.J. 2014. In vitro culture of cucumber microspores. Cucurbit Genetics Cooperative Report. 37:1-1.
Genetic mapping of paternal sorting of mitochondria in cucumber - (Peer Reviewed Journal)
Calderon, C.I., Yandell, B.S., Havey, M.J. 2012. Genetic mapping of paternal sorting of mitochondria in cucumber. Theoretical and Applied Genetics. 125:11-18.
Transcriptome profilng of defense responses to aphid feeding in wheat - (Abstract Only)
Krishnareddy, S., Weng, Y., Rudd, J., Akhunova, A., Liu, S. 2011. Transcriptome profilng of defense responses to aphid feeding in wheat [abstract]. Plant and Animal Genome Conference. Available: http://pag.confex.com/pag/xx/webprogram/Paper4178.html.
Chromosome synteny in cucumis species - (Abstract Only)
Weng, Y., Yang, L., Koo, D., Li, D., Jiang, J., Havey, M.J. 2011. Chromosome synteny in cucumis species [abstract]. Plant and Animal Genome Conference. Available: http://pag.confex.com/pag/xx/webprogram/Paper2200.html.
Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci - (Peer Reviewed Journal)
Baransi, R., Maksylewicz-Kaul, A., Nothnagel, T., Cavagnaro, P., Simon, P.W., Grzebelus, D. 2011. Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci. Genetic Resources and Crop Evolution. 59(2):163-170.
Development of applied genomics tools for cucumber breeding - (Abstract Only)
Weng, Y. 2011. Development of applied genomics tools for cucumber breeding. Pickle Packers International Meeting Proceedings.
De novo assembly of the carrot mitochondrial genome - (Abstract Only)
Iorizzo, M., Simon, P.W., Senalik, D.A., Szklarczyk, M., Grzeblus, D. 2012. De novo assembly of the carrot mitochondrial genome [abstract]. Plant and Animal Genome Conference. Paper No. P0040.
Diallel analysis of floral longevity in Impatiens walleriana - (Peer Reviewed Journal)
Howard, N., De Leon, N., Havey, M.J., Martin, W. 2012. Diallel analysis of floral longevity in Impatiens walleriana. Journal of the American Society for Horticultural Science. 137(1):47-50.
Identification and validation of a core set of microsatellite markers for genetic diversity analysis in watermelon, Citrullus lanatus Thunb. Matsum. & Nakai - (Peer Reviewed Journal)
Zhang, H., Wang, H., Guo, S., Ren, Y., Gong, G., Weng, Y., Xu, Y. 2011. Identification and validation of a core set of microsatellite markers for genetic diversity analysis in watermelon, Citrullus lanatus Thunb. Matsum. & Nakai. Euphytica. 186:329-342.
Map-based cloning a multifunctional gene regulating leaf, flower and fruit development and plant architecture in cucumber - (Abstract Only)
Yang, L., Weng, Y. 2011. Map-based cloning a multifunctional gene regulating leaf, flower and fruit development and plant architecture in cucumber [abstract]. 2011 Plant Sciences Symposium.
In vitro flowering and pollen viability of cucumber - (Peer Reviewed Journal)
Havey, M.J., Kielkowska, A.Z. 2011. In vitro flowering and pollen viability of cucumber. Plant Cell Tissue And Organ Culture. 109:73-82.
Fine genetic mapping of greenbug aphid resistance gene Gb3 in Aegilops tauschii - (Peer Reviewed Journal)
Azhaguvel, P., Rudd, J.C., Ma, Y., Luo, M., Weng, Y. 2011. Fine genetic mapping of greenbug aphid resistance gene Gb3 in Aegilops tauschii. Theoretical and Applied Genetics. 124(3):555-564.
Overview of USDA-SCRI Project: Cucumber applied genomics: tool development and applications for recessive disease resistance genes - (Abstract Only)
Weng, Y. 2011. Overview of USDA-SCRI Project: Cucumber applied genomics: tool development and applications for recessive disease resistance genes. Pickle Packers International Meeting Proceedings.
Fine mapping of paternal sorting of mitochondria (psm) in cucumber - (Abstract Only)
Park, Y.H., Calderon, C., Al-Faifi, S., Havey, M.J. 2011. Fine mapping of paternal sorting of mitochondria (psm) in cucumber [abstract]. 8th Solanaceae and 2nd Cucurbitaceae Genome Joint Conference. Paper No. OP9-1.
Daucus - (Book / Chapter)
Grzebelus, D., Baranski, R., Spalik, K., Allender, C., Simon, P.W. 2011. Daucus. In: Kole, C., editor, Wild Crop Relatives: Genomic and Breeding Resources. New York, NY:Springer. p. 91-113.
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity - (Peer Reviewed Journal)
Iorizzo, M., Senalik, D.A., Grzebelus, D., Bowman, M., Cavagnaro, P.F., Matvienko, M., Ashrafi, H., Van Deynze, A., Simon, P.W. 2011. De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. Biomed Central (BMC) Genomics. 12:389.
Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae - (Peer Reviewed Journal)
Cavagnaro, P.F., Chung, S., Manin, S., Yildiz, M., Ali, A., Alessandro, M.S., Iorizzo, M., Senalik, D.A., Simon, P.W. 2011. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae. Biomed Central (BMC) Genomics. 12:386.
Onion thiosulfinates: some like them hot, others not - (Abstract Only)
Havey, M.J. 2011. Onion thiosulfinates: some like them hot, others not [abstract]. ASA-CSSA-SSSA Annual Meeting Abstracts. Paper No. 338-5.
Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp - (Peer Reviewed Journal)
Bo, K., Song, H., Shen, J., Qian, C., Staub, J.E., Simon, P.W., Lou, Q., Chen, J. 2011. Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp. Molecular Breeding. 30(1):335-344.
Retrotransposon- and microsatellite sequence-associated genomic changes in early 2 generations of a newly synthesized allotetraploid cucumis × hytivus Chen & Kirkbride - (Peer Reviewed Journal)
Jiang, B., Lou, Q., Wang, D., Wu, Z., Zhang, W., Mbira, K.G., Weng, Y., Chen, J. 2011. Retrotransposon- and microsatellite sequence-associated genomic changes in early 2 generations of a newly synthesized allotetraploid cucumis × hytivus Chen & Kirkbride. Plant Molecular Biology. Available: http://www.springerlink.com/content/2155j32p4h574585/export-citation/.
Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping - (Peer Reviewed Journal)
Li, D., Weng, Y., Cuevas, H., Yang, L., Li, Y., Garcia-Mas, J., Zalapa, J.E., Staub, J.E., Luan, F., Reddy, U., He, X., Gong, Z. 2011. Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping. Biomed Central (BMC) Genomics. 12:396-409.
Fine genetic mapping of Cp, a recessive gene for compact (dwarf) plant architecture in cucumber, cucumis sativus L - (Peer Reviewed Journal)
Li, Y., Pathak, M., Yang, L., Li, D., He, X., Weng, Y. 2011. Fine genetic mapping of Cp, a recessive gene for compact (dwarf) plant architecture in cucumber, cucumis sativus L. Journal of Theoretical and Applied Genetics. Available: http://www.springerlink.com/content/b3062187w253v464/.
A linkage map of cultivated cucumber (cucumis sativus l.) with 248 microsatellite marker loci and seven genes for horticulturally important traits - (Peer Reviewed Journal)
Miao, H., Zhang, S., Wang, X., Zhang, Z., Li, M., Mu, S., Cheng, Z., Zhang, R., Huang, S., Xie, B., Fang, Z., Zhang, Z., Weng, Y., Gu, X. 2011. A linkage map of cultivated cucumber (cucumis sativus l.) with 248 microsatellite marker loci and seven genes for horticulturally important traits. Euphytica. Available: http://www.springerlink.com/content/l8u2603qg4657g53/fulltext.html.
Comparative FISH mapping of Daucus species (Apiaceae family) - (Peer Reviewed Journal)
Iovene, M., Cavagnaro, P.F., Simon, P.W., Senalik, D.A., Buell, C.R., Jiang, J. 2011. Comparative FISH mapping of Daucus species (Apiaceae family). Chromosome Research. 19:493-506.
An International Plan to Sequence the Onion Genome - (Abstract Only)
Havey, M.J., Bohanec, B., Mccallum, J., Town, C. 2012. An International Plan to Sequence the Onion Genome. International Symposium on the Edible Alliaceae [abstract]. Paper. No. W-06.
Wild tomato introgressions that confer resistance to begomoviruses in Guatemala - (Abstract Only)
Mejia, L., Fulladolsa, A.C., Mendez, L., Melgar, S., Hutton, S., Scott, J.W., Havey, M.J., Maxwell, D.P. 2011. Wild tomato introgressions that confer resistance to begomoviruses in Guatemala ]abstract]. Solanaceae International Congress Proceedings. Available: http://www.sol-symposium2011.com/sci-program.aspx.
Cloning and function validation of a nb-arc-lrr-type candidate gene for the greenbug aphid resistance locus, Gb3, in wheat - (Abstract Only)
Azhaguvel, P., Weng, Y., Ma, Y., Luo, M., Simkova, H., Dolezel, J., Wicker, T., Saha, M., Rammna, H., Nelson, R., Zhou, C., Ray, T., Tang, Y., Liu, S., Rudd, J. 2010. Cloning and function validation of a nb-arc-lrr-type candidate gene for the greenbug aphid resistance locus, Gb3, in wheat [abstract]. Plant and Animal Genome Conference. P301.
Molecular mapping of genes for compact growth habit and fruit spine color in cultivated cucumber (Cucumis sativus var. sativus L.) - (Abstract Only)
Li, Y., Weng, Y. 2010. Molecular mapping of genes for compact growth habit and fruit spine color in cultivated cucumber (Cucumis sativus var. sativus L.) [abstract]. Plant and Animal Genome Conference. P324.
Molecular markers: are they really useful to detect genetic variability in local garlic collections? - (Peer Reviewed Journal)
Garcia Lampasona, S., Burba, J.L., Simon, P.W. 2010. Molecular markers: are they really useful to detect genetic variability in local garlic collections? The Americas Journal of Plant Science and Biotechnology. 4(SI1):104-112.
The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae - (Abstract Only)
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philge, P., Senapathy, P. 2011. The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae [abstract]. Plant and Animal Genome Conference. P. 811.
Development of EST based markers for exploiting the carrot genome - (Abstract Only)
Iorizzo, M., Bowman, M., Simon, P.W., Cavagnaro, P., Senalik, D.A., Carputo, D., Van Deynze, A. 2011. Development of EST based markers for exploiting the carrot genome [abstract]. Plant and Animal Genome Conference. p. 175.
Genomics and genetic improvement of carrot pigments - (Abstract Only)
Simon, P.W. 2011. Genomics and genetic improvement of carrot pigments [abstract]. Plant and Animal Genome Conference. W409.
Sequencing and mapping of the onion genome - (Abstract Only)
Havey, M.J., Bohanec, B. 2010. Sequencing and mapping of the onion genome [abstract]. National Allium Research Conference. Paper No. O-01.
Major Cucurbit Crops - (Book / Chapter)
Weng, Y., Sun, Z. 2011. Major Cucurbit Crops. In: Kole, C., editor. Genetics, Genomics and Breeding of Cucurbits. Boca Raton, FL: Science Publishers. p. 1 - 16.
A collection of historical photos from US onion breeding and pathology - (Abstract Only)
Havey, M.J. 2010. A collection of historical photos from US onion breeding and pathology [abstract]. National Allium Research Conference. p. 18.
Bac Libraries from Wheat Chromosome 7d – Efficient Tool for Positional Cloning of Aphid Resistance Genes - (Peer Reviewed Journal)
Simkova, H., Safar, J., Kubalakova, M., Suchankova, P., Cihalikova, J., Robert-Quatre, H., Azhaguvel, P., Weng, Y., Peng, J.H., Lapitan, N.L., Ma, Y., You, F.M., Luo, M., Bartos, J., Dolezel, J. 2010. BAC Libraries from Wheat Chromosome 7D – Efficient Tool for Positional Cloning of Aphid Resistance Genes. Journal of Biomedicine and Biotechnology. Available: http://www.hindawi.com/journals/jbb/2011/302543.html.
Development of a haploid mapping family for onion - (Abstract Only)
Duangjit, J., Bohanec, B., Havey, M.J. 2010. Development of a haploid mapping family for onion [abstract]. Plant and Animal Genome Conference. Paper No. P668.
Studies on in vitro culture of cucumber microspores - (Abstract Only)
Havey, M.J., Kielkowska, A.Z. 2010. Studies on in vitro culture of cucumber microspores [abstract]. Plant and Animal Genome Conference. Paper No. P871.
Fine Genetic Mapping Localizes Cucumber Scab Resistance Gene Ccu into an R Gene Cluster - (Peer Reviewed Journal)
Kang, H., Yang, Y., Zhang, Z., Zhang, S., Mao, Z., Cheng, G., Gu, X., Huang, S., Weng, Y., Xie, B. 2010. Fine Genetic Mapping Localizes Cucumber Scab Resistance Gene Ccu into an R Gene Cluster. Journal of Theoretical and Applied Genetics. Available: http://www.springerlink.com/content/lqu520225154x357/.
Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.) - (Peer Reviewed Journal)
Cavagnari, P.F., Weng, Y., Senalik, D.A., Yang, L., Simon, P.W., Harkins, T.T., Kodira, C.D., Huang, S. 2010. Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.). Biomed Central (BMC) Genomics. Available: http://www.biomedcentral.com/1471-2164/11/569.
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.) - (Peer Reviewed Journal)
Cavagnaro, P.F., Weng, Y., Senalik, D.A., Simon, P.W., Harkins, T.T., Huang, S. 2010. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). Biomed Central (BMC) Genomics. 11:569-588.
Fine mapping of paternal sorting of mitochondria (Psm) in cucumber - (Abstract Only)
Calderon, C., Al-Faifi, S., Havey, M.J. 2010. Fine Mapping of Paternal Sorting of Mitochondria (Psm) in Cucumber [abstract]. Plant and Animal Genome Conference. Paper No. W182.
The Unique Mitochondrial Genetics of Cucumber - (Review Article)
Calderon, C., Al-Faifi, S., Bartoszewski, G., Malepzy, S., Havey, M.J. 2010. The Unique Mitochondrial Genetics of Cucumber. Cucurbitaceae Proceedings. p. 40-41.
RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae - (Peer Reviewed Journal)
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philip, P., Senapathy, P. 2010. RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae. Biomed Central (BMC) Plant Biology. 10:161.
Genetic Diversity among Sorghum Bicolor L. Moench Benotypes as Revealed by Prolamines and SSR Markers - (Peer Reviewed Journal)
Vittal, R., Stewart, B.A., Weng, Y., Ghosh, N. 2010. Genetic Diversity among Sorghum Bicolor L. Moench Benotypes as Revealed by Prolamines and SSR Markers. Journal of Biotechnology. 2:101-111.
Translational Genomics of Onion: Challenges of an Enormous Nuclear Genome - (Abstract Only)
Havey, M.J. 2010. Translational Genomics of Onion: Challenges of an Enormous Nuclear Genome [abstract]. Abstract of International Horticultural Congress. Paper No. S04.006.
Cucumber Phylogeny, Genetics and Genomics as of 2010 - (Proceedings)
Weng, Y. 2010. Cucumber Phylogeny, Genetics and Genomics as of 2010. Cucurbitaceae Proceedings. p. 114-119.
Biotypic diversity in greenbug (Hemiptera: Aphididae): Microsatellite-based regional divergence and host-adapted differentiation - (Peer Reviewed Journal)
Weng, Y., Perumal, A., Rudd, J.C., Burd, J.D. 2010. Biotypic diversity in greenbug (Hemiptera: Aphididae): Microsatellite-based regional divergence and host-adapted differentiation. Journal of Economic Entomology. 103(4):1454-1463.
An Extended Intervarietal Microsatellite Linkage Map of Cucumber, Cucumis Sativus L - (Peer Reviewed Journal)
Weng, Y., Staub, J.E., Johnson, S., Huang, S. 2010. An Extended Intervarietal Microsatellite Linkage Map of Cucumber, Cucumis Sativus L. HortScience. 45:882-886.
New carrot and garlic germplasm to advance breeding and understand crop origins - (Abstract Only)
Simon, P.W. 2010. New carrot and garlic germplasm to advance breeding and understand crop origins [abstract]. American Society of Horticulture Science Meeting. p. 11.
Genome mapping and QTL analysis in cucurbits - (Book / Chapter)
Cuevas, H.E., Staub, J.E., Zalapa, J.E. 2011. Genome mapping and QTL analysis in cucurbits. In: Wang, Y.H., Behera , T.K., Kole , E.C., editors. Cucurbits; Genetics, Genomics and Breeding in Crop Plants. Enfield, New Hampshire:Science Publishers Inc.
Evaluation of Gynogenic Responsiveness and Pollen Viability of Selfed Doubled Haploid Onion Lines and Chromosome Doubling via Somatic Regeneration - (Peer Reviewed Journal)
Jakse, M., Hirschegger, P., Bohanec, B., Havey, M.J. 2010. Evaluation of Gynogenic Responsiveness and Pollen Viability of Selfed Doubled Haploid Onion Lines and Chromosome Doubling via Somatic Regeneration. Journal of the American Society for Horticultural Science. 135(1):67-73.
Genetic diversity among cucumis metuliferus populations revealed by cucumber microsatellites - (Peer Reviewed Journal)
Weng, Y. 2010. Genetic diversity among cucumis metuliferus populations revealed by cucumber microsatellites. HortScience. 45(2):214-219.
The Dominant Ms Allele in Onion Shows Reduced Penetrance - (Peer Reviewed Journal)
Melgar, S., De Biologia, E., Havey, M.J. 2010. The Dominant Ms Allele in Onion Shows Reduced Penetrance. Journal of the American Society for Horticultural Science. 135:49-52.
Expression Profiling of R Gene-Mediated Host Defense Against Aphid Feeding in Wheat - (Abstract Only)
Weng, Y., Bai, J., Akhunova, A., Azhaguvel, P., Rudd, J. 2010. Expression Profiling of R Gene-Mediated Host Defense Against Aphid Feeding in Wheat [abstract]. Plant and Animal Genome Conference. p. 232.
A Candidate Gene for Aphid Resistance in Wheat - (Abstract Only)
Azhaguvel, P., Weng, Y., Ma, Y., Luo, M., Simkova, H., Dolezel, J., Rudd, J. 2010. A Candidate Gene for Aphid Resistance in Wheat [abstract]. Plant and Animal Genome Conference. p. 296.
Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis - (Abstract Only)
Cavagnaro, P., Weng, Y., Senalik, D.A., Harkins, T.T., Kodira, C.D., Simon, P.W., Huang, S. 2010. Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis [abstract]. Plant and Animal Genome Conference. p. 135.
Genetic Analyses of Sorting of Paternally Transmitted Mitochondrial DNA - (Abstract Only)
Calderon, C.I., Havey, M.J. 2010. Genetic Analyses of Sorting of Paternally Transmitted Mitochondrial DNA [abstract]. Plant and Animal Genome Conference. p. 675.
Effectiveness of the Ty-3 Introgression for Conferring Resistance in Recombinant Inbred Lines of Tomato to Bipartite Begomoviruses in Guatemala - (Research Notes)
Mejia, L., Garcia, B.E., Fulladolsa, A.C., Sanchez-Perez, A., Havey, M.J., Maxwell, D.P. 2009. Effectiveness of the Ty-3 Introgression for Conferring Resistance in Recombinant Inbred Lines of Tomato to Bipartite Begomoviruses in Guatemala. Tomato Genetics Cooperative. 59:42-47.
Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers - (Abstract Only)
Acharya, L., Simon, P.W. 2010. Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers [abstract]. Plant and Animal Genome Conference. p. 124.
DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome - (Abstract Only)
Podgorni, M., Mschichowska, A., Grzebelus, E., Grzebelus, D., Simon, P.W. 2010. DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome [abstract]. Plant and Animal Genome Conference. p. 205.
Developing genomic resources for the apiaceae - (Abstract Only)
Bowman, M., Matvienko, M., Van Deynze, A., Simon, P.W., Senalik, D.A. 2010. Developing genomic resources for the apiaceae [abstract]. Plant and Animal Genome Conference. P. 037.
New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae - (Abstract Only)
Cavagnaro, P.F., Chung, S., Manin, S., Atkins, A.E., Simon, P.W. 2010. New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae [abstract]. Plant and Animal Genome Conference. P. 038.
Genetic Analyses of Soluble Carbohydrate Concentrations in Onion Bulbs - (Peer Reviewed Journal)
Havey, M.J., Raines, S., Henson, C.A. 2009. Genetic Analyses of Carbohydrate Accumulation in Onion. Journal of the American Society for Horticultural Science. 134:618-623.
The Genome of the Cucumber, Cucumis Sativus L - (Peer Reviewed Journal)
Huang, S., Li, R., Zhang, Z., Li, L., Gu, X., Fan, W., Lucas, W., Wang, X., Xie, B., Ni, P., Ren, Y., Zhu, H., Li, J., Lin, K., Jin, W., Fei, Z., Li, G., Staub, J.E., Kilian, A., Van Der Vossen, E.A., Wu, Y., Guo, J., He, J., Jia, Z., Ren, Y., Tian, G., Lu, Y., Ruan, J., Qian, W., Wang, M., Huang, Q., Li, B., Xuan, Z., Cao, J., Wu, Z., Zhang, J., Cai, Q., Bai, Y., Zhao, B., Han, Y., Li, Y., Li, X., Wang, S., Shi, Q., Liu, S., Cho, W.K., Kim, J., Xu, Y., Heller-Uszynska, K., Miao, H., Cheng, Z., Zhang, S., Wu, J., Yang, Y., Kang, H., Li, M., Liang, H., Ren, X., Shi, Z., Wen, M., Jian, M., Yang, H., Zhang, G., Yang, Z., Chen, R., Liu, S., Li, J., Ma, L., Liu, H., Zhou, Y., Zhao, J., Fang, X., Li, G., Fang, L., Li, Y., Liu, D., Zheng, H., Zhang, Y., Qin, N., Li, Z., Yang, G., Yang, S., Bolund, L., Kristiansen, K., Zheng, H., Li, S., Zhang, X., Yang, H., Wang, J., Sun, R., Zhang, B., Jiang, S., Wang, J., Du, Y., Li, S. 2009. The Genome of the Cucumber, Cucumis Sativus L. Nature Genetics. 41(12):1275-1281.
2008 Public Sector Cucumber Research Priority Survey - (Research Notes)
Weng, Y. 2009. 2008 Public Sector Cucumber Research Priority Survey. Cucurbit Genetics Cooperative Report. 31-32:1-4.
Fundamentals of Physical Mapping - (Book / Chapter)
Azhaguvel, P., Weng, Y., Babu, R., Manickavel, A., Saraswathi, D.V., Balyan, H.S. 2010. Fundamentals of Physical Mapping. In: Kole, C., Abbot, A. G., editors. Principles and Practices of Plant Genomics, Volume 3: Advanced Genomics. Boca Raton, FL:CRC Press. p. 24-62.
Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.) - (Peer Reviewed Journal)
Cuevas, H.E., Staub, J.E., Simon, P.W. 2010. Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.). Euphytica. 171(3):301-311.
Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit - (Peer Reviewed Journal)
Cuevas, H.E., Song, H., Staub, J.E., Simon, P.W. 2010. Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit. Euphytica. 171(3):301-311.
Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008) - (Peer Reviewed Journal)
Ortiz, R., Simon, P.W., Jansky, S.H., Stelly, D. 2009. Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008). Annals Of Botany. 104(5):795-807.
Cucumber as a Model for Organellar Genetics - (Abstract Only)
Havey, M.J., Bartoszewski, G., Malepszy, S. 2009. Cucumber as a Model for Organellar Genetics [abstract]. Joint Congress SBD and SGD Otocec. p. 62.
Educating the Next Generation of Plant Breeders: The Need and the Challenge - (Peer Reviewed Journal)
Baenziger, P.S., Simon, P.W., Wehner, T.C. 2009. Educating the Next Generation of Plant Breeders: The Need and the Challenge. Society for Advancement of Breeding Researches in Asia and Oceania. 14:1-10.
Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding - (Peer Reviewed Journal)
Tanumihardjo, S., Horvitz, M., Dosti, M.P., Simon, P.W. 2009. Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding. Experimental Biology and Medicine. 234:1280-1286.
An Inter-varietal Cucumber Linkage Map with 133 New Microsatellite Markers - (Abstract Only)
Weng, Y. 2009. An Inter-varietal Cucumber Linkage Map with 133 New Microsatellite Markers [abstract]. International Symposium on Cucurbits Proceedings. p. 22.
Genome Wide Characterization of Simple Sequence Repeats in Cucumber - (Abstract Only)
Weng, Y., Cavagnaro, P., Senalik, D.A., Harkins, T., Simon, P.W. 2009. Genome Wide Characterization of Simple Sequence Repeats in Cucumber [abstract]. International Symposium on Cucurbits Proceedings. p. 80.
Molecular mapping of greenbug resistance genes Gb2 and Gb6 in T1AL.1RS wheat-rye translocations - (Peer Reviewed Journal)
Weng, Y., Lu, H., Rudd, J.C., Burd, J.D. 2009. Molecular mapping of greenbug resistance genes Gb2 and Gb6 in T1AL.1RS wheat-rye translocations. Plant Breeding. 129:472-476.
New Specialty Crop Funds Invested in Onion Genomics Project - (Trade Journal)
Havey, M.J., Cheung, F., Cramer, C.S., Pappu, H., Schwartz, H.F. 2009. New Specialty Crop Funds Invested in Onion Genomics Project. Onion World. 25:21.
Mapping of Mitochondrial Sorting Locus in Cucumber - (Abstract Only)
Al-Faifi, S., Garcia-Mas, J., Havey, M.J. 2009. Mapping of Mitochondrial Sorting Locus in Cucumber [abstract]. Plant Genomics and Beyond Conference 2009. p. 59.
Genetic Diversity of USDA Cucumis metuliferus E. Mey. Collection Revealed by Cucumber Genomic Microsatellite Markers - (Abstract Only)
Weng, Y. 2009. Genetic Diversity of USDA Cucumis metuliferus E. Mey. Collection Revealed by Cucumber Genomic Microsatellite Markers. American Society of Horticulture Science Meeting. 44(4):1017.
Proteomic Analysis of Male-Fertility Restoration in CMS Onion - (Abstract Only)
Melgar, S., Havey, M.J. 2009. Proteomic Analysis of Male-Fertility Restoration in CMS Onion [abstract]. Plant Genomics and Beyond Conference 2009. p. 87.
Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors - (Peer Reviewed Journal)
Sun, T., Simon, P.W., Tanumihardjo, S.A. 2009. Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors. Journal of Agricultural and Food Chemistry. 57(10):4142-4147.
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences - (Peer Reviewed Journal)
Simon, P.W., Cavagnaro, P.F., Chung, S., Szklarczyk, M., Grzebelus, D., Senalik, D.A., Atkins, A.E. 2009. Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences. Molecular Genetics and Genomics. 281(3):273-288.
SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries - (Peer Reviewed Journal)
Simon, P.W., Cavagnaro, P.F., Senalik, D.A. 2009. SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries. Biotechniques. 47:681-690.
A One-Megabase Physical Map Provides Insights on Gene Organization in the Enormous Mitochondrial Genome of Cucumber - (Peer Reviewed Journal)
Bartoszewski, G., Gawronski, P., Szklarczyk, M., Verbakel, H., Havey, M.J. 2009. A One-Megabase Physical Map Provides Insights on Gene Organization in the Enormous Mitochondrial Genome of Cucumber. Genome. 52:299-307.
The Concept of Horizontal Linkage and Its Application to Genetics and Breeding - (Book / Chapter)
Peloquin, S.J., Simon, P.W., Jansky, S.H. 2009. The Concept of Horizontal Linkage and Its Application to Genetics and Breeding. In: Mohan, R.H., editor. Research Advances in Heredity. 1st edition. Kerala, India:Global Research Network. p. 1-7.
Ensuring U.S. Onion Sustainability: Breeding and Genomics to Control Thrips and Iris Yellow Spot Virus - (Abstract Only)
Havey, M.J., Cheung, F., Cramer, C., Pappu, H., Schwartz, H. 2009. Ensuring U.S. onion sustainability: Breeding and genomics to control thrips and iris yellow spot virus [abstract]. USDA National Research Initiative Project Director Meeting. p. 19.
Genomic and proteomic analyses of male-fertility restoration in onion - (Abstract Only)
Melgar, S., Havey, M.J. 2008. Genomic and proteomic analyses of male-fertility restoration in onion [abstract]. National Allium Research Conference. p. 20.
Goals of a grant funded by the Specialty Crops Research Initiative Grant on translational genomics and pest resistances in onion - (Abstract Only)
Havey, M.J., Cheung, F., Cramer, C., Pappu, H., Schwartz, H. 2009. Goals of a grant funded by the Specialty Crops Research Initiative Grant on translational genomics and pest resistances in onion [abstract]. National Allium Research Conference. p. 13.
Proteomic analyses of male-fertility restoration in CMS onion - (Abstract Only)
Melgar, S.A., Havey, M.J. 2009. Proteomic analyses of male-fertility restoration in CMS onion [abstract]. Plant and Animal Genome Conference. p. 758.
Genetics of carbohydrate accumulation in onion - (Abstract Only)
Raines, S., Havey, M.J., Henson, C.A. 2009. Genetics of carbohydrate accumulation in onion [abstract]. National Allium Research Conference. p. 21.
Progress in the Development of Nutrient-Rich Nematode Resistant Carrots - (Abstract Only)
Simon, P.W., Roberts, P.A., Nunez, J. 2009. Progress in the Development of Nutrient-Rich Nematode Resistant Carrots [abstract]. 33rd International Carrot Conference. Paper No. BG-101.
Genetic Influences on the Seed Yielding Ability of Carrot Hybrids - (Abstract Only)
Simon, P.W., Kane, R.T. 2009. Genetic Influences on the Seed Yielding Ability of Carrot Hybrids [abstract]. 33rd International Carrot Conference. Paper No. BG-102.
Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization - (Abstract Only)
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization [abstract]. 33rd International Carrot Conference. Paper No. BG-103.
Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR - (Abstract Only)
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR [abstract]. 33rd International Carrot Conference. Paper No. BG-104.
Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR - (Abstract Only)
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 717.
Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae - (Abstract Only)
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 132.
Association Between Pachytene Chromosomes and Linkage Groups in Carrot - (Abstract Only)
Simon, P.W., Iovene, M., Cavagnaro, P.F., Jiang, J. 2009. Association Between Pachytene Chromosomes and Linkage Groups in Carrot. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 201.
High resolution melt-curve analysis to fine map a locus controlling the paternal sorting of mitochondria - (Abstract Only)
Calderon, C., Al-Faifi, S., Havey, M.J. 2008. High resolution melt-curve analysis to fine map a locus controlling the paternal sorting of mitochondria [abstract]. Plant and Animal Genome Conference. p. 160.
Genetic Diversity Analysis and Single-nucleotide Polymorphism Marker Development in Cultivated Bulb Onion Based on Expressed Sequence Tag–Simple Sequence Repeat Markers - (Peer Reviewed Journal)
Mccallum, J., Thomson, S., Pither-Joyce, M., Kenel, F., Clarke, A., Havey, M.J. 2008. Genetic Diversity Analysis and Single-nucleotide Polymorphism Marker Development in Cultivated Bulb Onion Based on Expressed Sequence Tag–Simple Sequence Repeat Markers. Journal of the American Society for Horticultural Science. 133:810-818.
Effectiveness of the Ty3 introgression for conferring resistance in F3 families of tomato to begomoviruses in Guatemala - (Research Notes)
Garcia, B.E., Teni, L.R., Sanchez, A., Barillas, A.C., Montes, L., Melgar, S., Keuler, N., Salus, M., Havey, M.J. 2008. Effectiveness of the Ty3 introgression for conferring resistance in F3 families of tomato to begomoviruses in Guatemala. Tomato Genetics Cooperative. 58:22-28.
Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato - (Peer Reviewed Journal)
Iovene, M., Wielgus, S.M., Simon, P.W., Buell, C.R., Jiang, J. 2008. Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics. 180(3):1307-1317.
Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils - (Peer Reviewed Journal)
Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2008. Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils. Journal of Nutrition. 138(9):1692-1698.
Pilot Sequencing of Onion Genomic DNA Reveals Fragments of Transposable Elements, Low Gene Densities, and Significant Gene Enrichment After Methyl Filtration - (Peer Reviewed Journal)
Jakse, J., Meyer, J., Suzuki, G., Mccallum, J., Cheung, F., Town, C.D., Havey, M.J. 2008. Pilot Sequencing of Onion Genomic DNA Reveals Fragments of Transposable Elements, Low Gene Densities, and Significant Gene Enrichment After Methyl Filtration. Molecular Genetics and Genomics. 280(4):287-292.
Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2008. Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor. Scientia Horticultureae. 115(4):409-415.
Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2008. Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey. Scientia Horticultureae. 115(2):203-208.
Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas - (Peer Reviewed Journal)
Camadro, E.L., Cauhepe, M.A., Simon, P.W. 2008. Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas. Euphytica. 159(1-2):103-109.
Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products - (Book / Chapter)
Silva, E.M., Simon, P.W. 2006. Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products. In: Friedman, M., Mottram, D., editors. Advances in Experimental Medicine and Biology. New York, NY:Springer. p. 371-386.
Last Modified: 12/21/2014
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