Location: Sustainable Perennial Crops
Project Number: 1245-21000-267-13
Start Date: Mar 15, 2010
End Date: Mar 15, 2015
1. Analyze geographic variation in the CATIE Moniliophthora roreri collection: Lyophilized mycelia from different populations will be prepared in CATIE and sent to USDA/ARS/BARC/SPCL. Microsatellite primers markers will be designed based on the USDA sequence information of M. roreri. Markers will be used to genotype the collection. Inter-population relationships and allelic diversity will be analyzed using haplotypes and multi-locus data. Population analysis will be used to evaluate genotypic diversity, allelic frequencies, gene diversity and population differentiation. Spatial genetic variation will be analyzed using both molecular and GIS data. 2. Assess on farm genetic diversity: Landraces or farmer selections will be selected from traditional cacao farms in Bolivia, Guatemala, El Salvador, Belize and Costa Rica. Leaf samples of cacao trees representing each landrace will be collected. Samples will be chosen based on interviews with farmers. The samples will be dried in silicone gel and sent to the SPCL for DNA extraction and fingerprint analysis using 100 SNP markers. The genetic relationship of these landraces will be analyzed using SNP data of reference populations. The asserted change in genetic diversity can be assessed by comparing the “disturbed” versus “undisturbed” farms or populations. The resultant data will allow us to measure the population structure and level of genetic diversity by farm, by region and by GIS. 3. Verify genotype identity of elite CATIE cacao clones: Leaves of the elite clones will be sampled following the guidelines established by SPCL and used for DNA extraction. The samples will be sent to SPCL and fingerprinted using 80 SNP markers. Off-types will be identified based on the DNA profiles. Parentage analysis will be applied to confirm pedigree relationships in case where parental combinations are known. Standard SNP profiles will be established for each elite clone and the SNP-based genotype verification will be used to improve and monitor varietal dissemination. 4. Access biocontrol effectiveness in field trials: At present, isolates to be considered for further field studies include 15 candidate endophytes (Trichoderma species) previously screened for biocontrol and endophytic efficacy in cacao by ARS, and several isolates of specific interest to CATIE scientists. Lab-based research on formulations with Trichoderma isolates indicate a significant benefit to Trichoderma efficacy in response to added nutrients, humectants, and vegetable oils (corn oil) and these will be used to enhance Trichoderma biocontrol efficacy in small scale and short term field studies. Formulation concepts will be optimized for readily available nutrient sources, concentrations, and application timing. Standard protocols will be developed for rapid evaluation of biocontrol agents, formulations, and their interactions in the field. Large scale field trials of promising endophyte formulations with biocontrol potential will be conducted. The economic impact of biocontrol strategies for the control of disease will be determined.