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United States Department of Agriculture

Agricultural Research Service

Related Topics

Research Project: Molecular Approaches for the Identification and Characterization of Antimicrobial Resistance in Foodborne Pathogens

Location: Bacterial Epidemiology and Antimicrobial Resistance

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Antimicrobial resistance, virulence determinants, and genetic profiles of clinical and non-clinical Enterococcus cecorum from poultry - (Peer Reviewed Journal)
(29-Sep-14)
Genomes of Salmonella with diverse patterns of antibiotic resistance (AR) revealed the dynamics of AR gene organization and detected resistance gene families found in Salmonella - (Abstract Only)
Frye, J.G., Desai, P.T., Porwollik, S., Long, F., Cheng, P., Chu, W., Weinstock, G.M., Guard, J.Y., Hiott, L.M., Barrett, J.B., Humayoun, S.B., Williams, L.E., Jackson, C.R., Mcclelland, M. 2013. Genomes of Salmonella with diverse patterns of antibiotic resistance (AR) revealed the dynamics of AR gene organization and detected resistance gene families found in Salmonella. American Society for Microbiology Conference. October 5-9, 2013. Boston, Massachusetts.
Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages - (Peer Reviewed Journal)
Deng, X., Desai, P.T., Den Bakker, H.C., Mikoleit, M., Tolar, B., Trees, E., Hendriksen, R.S., Frye, J.G., Porwollik, S., Weimer, B.C., Wiedmann, M., Weinstock, G.M., Mcclelland, M., Fields, P.I. 2014. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerging Infectious Diseases. 20(9):1481-1489.
Community-associated methicillin resistant Staphylococcus aureus in South Florida Hospital and Recreational Environments - (Abstract Only)
Hower, S., Newton, C., Jackson, C.R., Barrett, J.B., Bustillo, A.J., Dickinson, G., Plano, L.R., Krisko, I. 2014. Community-associated methicillin resistant Staphylococcus aureus in South Florida Hospital and Recreational Environments. American Society for Microbiology General Meeting. May 17-20, 2014. Boston, Massachusetts.
Pangenome and taxonomic analysis of Salmonella enterica subspecies enterica - (Abstract Only)
Desai, P.T., Porwollik, S., Long, F., Cheng, P., Weinstock, G., Fields, P., Weimer, B., Guiney, D., Gal-Mor, O., Rabsch, W., Frye, J.G., Guard, J.Y., Mcclelland, M. 2014. Pangenome and taxonomic analysis of Salmonella enterica subspecies enterica. American Society for Microbiology General Meeting. May 17-20, 2014. Boston, Massachusetts.
Genetic variation and genomic context of antibiotic resistance genes and mobile genetic elements in Salmonella from animals and food production facilities - (Abstract Only)
Williams, L.E., Mcclelland, M., Mcarthur, A., Waglechner, N., Nizam, F., Desai, P.T., Weinstock, G., Barrett, J.B., Hiott, L.M., Jackson, C.R., Frye, J.G. 2014. Genetic variation and genomic context of antibiotic resistance genes and mobile genetic elements in Salmonella from animals and food production facilities. American Society for Microbiology General Meeting. May 17-20, 2014. Boston, Massachusetts.
Relative survival of four serotypes of Salmonella enterica in low-water activity whey protein powder held at 36 and 70°C at various water activity levels - (Peer Reviewed Journal)
Santillana Farakos, S.M., Hicks, J.W., Frye, J.G., Frank, J.F. 2014. Relative survival of four serotypes of Salmonella enterica in low-water activity whey protein powder held at 36 and 70°C at various water activity levels. Journal of Food Protection. 77(7):1198-1200.
Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the Sigma54 (RpoN) regulon of Salmonella Typhimurium LT2 - (Peer Reviewed Journal)
Samuels, D.J., Frye, J.G., Porwollik, S., Mcclelland, M., Mrazek, J., Hoover, T.R., Karls, A.C. 2013. Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the Sigma54 (RpoN) regulon of Salmonella Typhimurium LT2. Biomed Central (BMC) Genomics. 14(1):602.
Genetic Mechanisms of antimicrobial resistance identified in Salmonella enterica, Escherichia coli, and Enteroccocus spp. isolated from U.S. food animals - (Review Article)
Frye, J.G., Jackson, C.R. 2013. Genetic Mechanisms of antimicrobial resistance identified in Salmonella enterica, Escherichia coli, and Enteroccocus spp. isolated from U.S. food animals. Frontiers in Microbiology. 4(135):1-22.
The taxonomic structure of Salmonella enterica subspecies enterica - (Abstract Only)
Desail, P.T., Porwollik, S., Long, F., Cheng, P., Clifton, S.W., Wollam, A., Weinstock, G.M., Fields, P., Mikoleit, M., Weimer, B., Guiney, D.W., Gal-Mor, O., Rabsch, W., Frye, J.G., Guard, J.Y., Mcclelland, M. 2013. The taxonomic structure of Salmonella enterica subspecies enterica. 113th American Society for Microbiology General Meeting. May 18-21, 2013. Denver, Colorado.
Human-associated methicillin-resistant Staphylococcus aureus from a subtropical recreational marine beach - (Peer Reviewed Journal)
Plano, L.R., Shibata, T., Garza, A.C., Kish, J., Fleisher, J., Sinigalliano, C.D., Gidley, M.L., Withum, K., Elmir, S.M., Hower, S., Jackson, C.R., Barrett, J.B., Cleary, T., Davidson, M., Davis, J., Mukherjee, S., Fleming, L.E., Solo-Gabriele, H.M. 2013. Human-associated methicillin-resistant Staphylococcus aureus from a subtropical recreational marine beach. Microbial Ecology. 65(4):1039-1051.
Clonally related methicillin-resistant Staphylococcus aureus isolated from short-finned pilot whales (Globicephala macrorhynchus), human volunteers, and a bayfront cetacean rehabilitation facility - (Peer Reviewed Journal)
Hower, S., Phillips, M.C., Brodsky, M., Dameron, A., Tamargo, M.A., Salazar, N.C., Jackson, C.R., Barrett, J.B., Davidson, M., Davis, J., Mukherjee, S., Ewing, R.Y., Gidley, M.L., Sinigalliano, C.D., Johns, L., Johnson Iii, F.E., Adebanjo, O., Plano, L.R. 2013. Clonally related methicillin-resistant Staphylococcus aureus isolated from short-finned pilot whales (Globicephala macrorhynchus), human volunteers, and a bayfront cetacean rehabilitation facility. Microbial Ecology. 65(4):1024-1038.
Prevalence and characterization of Methicillin-resistant Staphylococcus aureus isolates from retail meat and humans in Georgia - (Peer Reviewed Journal)
Jackson, C.R., Davis, J.A., Barrett, J.B. 2013. Prevalence and characterization of Methicillin-resistant Staphylococcus aureus isolats from retail meat and humans in Georgia. Journal of Clinical Microbiology. 51(4):1199-1207.
Pathogenicity of Dodecyltrimethylammonium Chloride-Resistant Salmonella enterica - (Peer Reviewed Journal)
Kautz, M.J., Dvorzhinskiy, A., Frye, J.G., Stevenson, N., Herson, D.S. 2013. Pathogenicity of Dodecyltrimethylammonium Chloride-Resistant Salmonella enterica. Applied and Environmental Microbiology. 79(7):2371-2376.
The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD - (Peer Reviewed Journal)
Hung, C., Garner, C.D., Slauch, J.M., Dwyer, Z.W., Lawhon, S.D., Frye, J.G., Ahmer, B.M., Altier, C. 2013. The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD. Molecular Microbiology. 87(5):1045-1060.
Antimicrobial resistance genes in multidrug-resistant Salmonella enterica isolated from animals, retail meats, and humans in the United States and Canada - (Peer Reviewed Journal)
Glenn, L.M., Lindsey, R.L., Folster, J.P., Pecic, G., Boerlin, P., Gilmour, M.W., Harbottle, H., Zhoa, S., Mcdermott, P., Cray, P.J., Frye, J.G. 2013. Antimicrobial resistance genes in multidrug-resistant Salmonella enterica isolated from animals, retail meats, and humans in the United States and Canada. Microbial Drug Resistance. 19(3):175-184.
Epidemiology and genotypic characteristics of Methicillin-Resistant Staphylococcus aureus strains of porcine origin - (Peer Reviewed Journal)
Molla, B., Byrne, M., Abley, M.J., Matthews, J., Jackson, C.R., Cray, P.J., Sreevatsan, S., Wang, P., Wondwossen, G. 2012. Epidemiology and genotypic characteristics of Methicillin-Resistant Staphylococcus aureus strains of porcine origin. Journal of Clinical Microbiology. 50(11):3687-3693.
Analysis of antimicrobial resistance mechanisms in MDR bacteria by microarray and high-throughput sequencing - (Abstract Only)
Frye, J.G. 2012. Analysis of antimicrobial resistance mechanisms in MDR bacteria by microarray and high-throughput sequencing. International Conference of the Korean Society of Veterinary Science. November 1-2, 2012. Seoul, Republic of Korea.
Microarray analysis of Salmonella Enteritidis Phage Type 8 treated with subinhibitory concentrations of trans-cinnamaldehyde or eugenol - (Abstract Only)
Kollanoor-Johny, A., Frye, J.G., Porwolik, S., Darre, M.J., Donoghue, A.M., Donoghue, D.J., Mcclelland, M., Venkitanarayanan, K. 2012. Microarray analysis of Salmonella Enteritidis Phage Type 8 treated with subinhibitory concentrations of trans-cinnamaldehyde or eugenol [abstract]. Poultry Science. 91(Suppl.1):76-77..
Characteristics of plasmids in multi-drug-resistant enterobacteriaceae isolated during prospective surveillance of a newly opened hospital in Iraq - (Peer Reviewed Journal)
Huang, X., Frye, J.G., Chahine, M.A., Glenn, L.M., Ake, J.A., Su, W., Nikolich, M.P., Lesho, E.P. 2012. Characteristics of plasmids in multi-drug-resistant enterobacteriaceae isolated during prospective surveillance of a newly opened hospital in Iraq. PLoS One. 7(7):1-8.e40360. doi: 10.1371/journal.pone.0040360.
Analysis of antimicrobial resistance genes detected in multiple-drug-resistant Escherichia coli isolates from broiler chicken carcasses - (Peer Reviewed Journal)
Glenn, L.M., Englen, M.D., Lindsey, R.L., Frank, J.F., Turpin, J.E., Berrang, M.E., Meinersmann, R.J., Cray, P.J., Frye, J.G. 2012. Analysis of antimicrobial resistance genes detected in multiple-drug-resistant Escherichia coli isolates from broiler chicken carcasses. Microbial Drug Resistance. 18(4):453-463.
Analysis and comparison of antimicrobial resistance mechanisms and plasmids found in multi-drug resistant (MDR) Salmonella enterica and Escherichia coli - (Abstract Only)
Frye, J.G., Hiott, L.M., Barrett, J.B., Glenn, L.M., Englen, M.D., Jackson, C.R. 2012. Analysis and comparison of antimicrobial resistance mechanisms and plasmids found in multi-drug resistant (MDR) Salmonella enterica and Escherichia coli. American Society for Microbiology 112th General Meeting, June 16-19, 2012, San Francisco, California. p. 143.
Application of multiplex PCR, pulsed-field gel electrophoresis (PFGE), and BOX-PCR for molecular analysis of enterococci - (Book / Chapter)
Jackson, C.R., Spicer, L.M., Barrett, J.B., and Hiott, L.M. 2012. Application of multiplex PCR, Pulsed-Field Gel Electrophoresis (PFGE), and BOX-PCR for molecular analysis of enterococci. In: Magdelden, S., editors. Gel Electrophoresis. Rijeka, Croatia: InTech-Open Access. p. 269-298. Available: http://www.intechopen.com/articles/show/title/application-of-multiplex-pcr-pulsed-field-gel-electrophoresis-pfge-and-box-pcr-for-molecular-analysis.
Analysis of antimicrobial resistance mechanisms in multi-drug resistant (MDR) Salmonella enterica by high-throughput DNA sequencing - (Abstract Only)
Frye, J.G., Hiott, L.M., Barrett, J.B., Glenn, L.M., Englen, M.D., Jackson, C.R., Cray, P.J. 2012. Analysis of antimicrobial resistance mechanisms in multi-drug resistant (MDR) Salmonella enterica by high-throughput DNA sequencing. International Conference on Emerging Infectious Diseases, March 11-14, 2012, Atlanta, Georgia. p.180.
Last Modified: 10/24/2014
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