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United States Department of Agriculture

Agricultural Research Service

Research Project: Genetic Enhancement of Allium, Cucumis, and Daucus Germplasm

Location: Vegetable Crops Research Unit

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Leaf waxes and thrips resistance in onion - (Trade Journal)
Havey, M.J. 2015. Leaf waxes and thrips resistance in onion. Onion World. 31(3):10-11.
Differential organellar transmission and significant reciprocal-cross effects in cucumber - (Peer Reviewed Journal)
(11-Feb-15)
Epicuticular waxes and thrips resistance in onion - (Abstract Only)
(01-Feb-15)
Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber - (Abstract Only)
Weng, Y., Bo, K., Yang, L., Simon, P.W., Chen, J. 2015. Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber [abstract]. Plant and Animal Genome Conference. Paper No. P0932.
A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation     Reprint Icon - (Peer Reviewed Journal)
Cavagnaro, P.F., Iorizzo, M., Yildiz, M., Senalik, D.A., Parsons, J., Ellison, S., Simon, P.W. 2014. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation. Biomed Central (BMC) Genomics. 15:1118.
The mosaic mutants of cucumber: A system to produce mitochondrial knock-downs - (Abstract Only)
Del Valle-Echevarria, A.R., Bartoszewski, G., Havey, M.J. 2015. The mosaic mutants of cucumber: A system to produce mitochondrial knock-downs [abstract]. Plant and Animal Genome Conference. Paper No. W545.
Why are there so many molecular markers tagging the Ms locus of onion - (Abstract Only)
Havey, M.J., Khrustaleva, L.I. 2014. Why are there so many molecular markers tagging the Ms locus of onion [abstract]. National Allium Research Conference. Paper No. 4.
Genetic analyses of anthocyanin concentrations and the intensity of red color in onion - (Abstract Only)
Duangjit, J., Welsh, K., Wise, M.L., Havey, M.J. 2014. Genetic analyses of anthocyanin concentrations and the intensity of red color in onion [abstract]. National Allium Research Conference. Paper No. 5.
Epicuticular waxes on onion leaves and associated resistance to onion thrips - (Abstract Only)
Damon, S., Groves, R., Havey, M.J. 2014. Epicuticular waxes on onion leaves and associated resistance to onion thrips [abstract]. National Allium Research Conference. Paper No. III-3.
Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins     Reprint Icon - (Peer Reviewed Journal)
Menda, N., Strickler, S.R., Edwards, J.D., Bombarely, A., Dunham, D.M., Martin, G.B., Mejia, L., Hutton, S.F., Havey, M.J., Maxwell, D.P., Mueller, L.A. 2014. Analysis of wild-species introgressions in tomato inbreds uncovers ancestral origins. Biomed Central (BMC) Genomics. 14(10):287-303.
Molecular mapping reveals structural rearrangements and quantitative trait loci underlying traits with local adaptation in semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan)     Reprint Icon - (Peer Reviewed Journal)
Bo, K., Ma, Z., Chen, J., Weng, Y. 2014. Molecular mapping reveals structural rearrangements and quantitative trait loci underlying traits with local adaptation in semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan). Theoretical and Applied Genetics. 128(1):25-39.
Qtl Mapping of Flowering Time and Fruit Shape in Xishuangbana Cucumber Wi767 (Cucumis Sativus L. Var. Xishuangbannanesis Qi Et Yuan) - (Proceedings)
Qu, S., Pan, Y., Weng, Y. 2014. QTL mapping of flowering time and fruit shape in Xishuangbana cucumber WI767 (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan). Cucurbitaceae Proceedings. p. 13.
QTLs for downy mildew resistance and their association with LRR-RLK resistance gene analogs in cucumber - (Proceedings)
Wang, Y., Vandenlangenberg, K., Wehner, T.C., Weng, Y. 2014. QTLs for downy mildew resistance and their association with LRR-RLK resistance gene analogs in cucumber. Cucurbitaceae Proceedings. p. 31.
Molecularly tagged genes and quantitative trait loci in cucumber - (Proceedings)
Weng, Y. 2014. Molecularly tagged genes and quantitative trait loci in cucumber. Cucurbitaceae Proceedings. Paper No. 48.
Molecularly tagged genes and quantitative trait loci in cucumber - (Proceedings)
Weng, Y. 2014. Molecularly tagged genes and quantitative trait loci in cucumber. Cucurbitaceae Proceedings. p. A8.
Iris yellow spot virus (Tospovirus: Bunyaviridae): From obscurity to research priority - (Review Article)
Bag, S., Schwartz, H.F., Cramer, C.S., Havey, M.J., Pappu, H.R. 2014. Iris yellow spot virus (Tospovirus: Bunyaviridae): From obscurity to research priority. Molecular Plant Pathology. 16:27.
Quantitative trait loci controlling amounts and types of epicuticular waxes in onion     Reprint Icon - (Peer Reviewed Journal)
Damon, S.J., Havey, M.J. 2014. Quantitative trait loci controlling amounts and types of epicuticular waxes in onion. Journal of the American Society for Horticultural Science. 139(5):597-602.
Genetic and environmental effects on production of spontaneous tetraploids in cucumber (Cucumis sativus L.) - (Abstract Only)
Ramirez-Madera, A.O., Havey, M.J., Weng, Y. 2014. Genetic and environmental effects on production of spontaneous tetraploids in cucumber (Cucumis sativus L.) [abstract]. National Association of Plant Breeders. Paper No. 51.
Development and validation of new SSR markers from expressed regions in the garlic genome     Reprint Icon - (Peer Reviewed Journal)
Ipek, M., Sahin, N., Ipek, A., Cansev, A., Simon, P.W. 2015. Development and validation of new SSR markers from expressed regions in the garlic genome. Scientia Horticulturae. 72(1):41-46.
Genetic basis of mitochondrial sorting in cucumber - (Proceedings)
Del-Valle Echevarria, A., Al-Faifi, S., Calderon, C., Sanseverino, W., Tormo, M., Garcia-Mas, J., Havey, M.J. 2014. Genetic basis of mitochondrial sorting in cucumber. Cucurbitaceae Proceedings. p. A15.
Variation for epicuticular waxes on onion foliage and impacts on numbers of onion thrips - (Peer Reviewed Journal)
Damon, S., Groves, R., Havey, M.J. 2014. Variation for epicuticular waxes on onion foliage and impacts on numbers of onion thrips. Journal of the American Society for Horticultural Science. 139(4):495-501.
QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber     Reprint Icon - (Peer Reviewed Journal)
Lu, H., Lin, T., Klein, J., Wang, S., Qi, J., Zhou, Q., Sun, J., Zhang, Z., Weng, Y., Huang, S. 2014. QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber. Theoretical and Applied Genetics. 127(7):1491-1499.
Genetic basis of mitochondrial sorting in cucumber - (Abstract Only)
Del-Valle Echevarria, A., Sanseverino, W., Tormo, M., Garcia-Mas, J., Al-Faifi, S., Calderon, C., Havey, M.J. 2014. Genetic basis of mitochondrial sorting in cucumber [abstract]. Cucurbitacea. Paper No. A15.
Evaluation of onion germplasm for resistance to Iris yellow spot (Iris yellow spot virus) and onion thrips, Thrips tabaci     Reprint Icon - (Peer Reviewed Journal)
Boateng, C.O., Schwartz, H.F., Havey, M.J., Otto, K. 2014. Evaluation of onion germplasm for resistance to Iris yellow spot (Iris yellow spot virus) and onion thrips, Thrips tabaci. Southwestern Entomologist. 39(2):237-260.
Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker     Reprint Icon - (Peer Reviewed Journal)
Macko-Podgorni, A., Iorizzo, M., Smolka, K., Simon, P.W., Grzebelus, D. 2014. Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker. Acta Biochimica Polonica. 61(1):19-22.
Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall     Reprint Icon - (Peer Reviewed Journal)
Saude, C., Simon, P.W., McDonald, M.R. 2014. Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall. Plant Disease. 98(7):929-936.
First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae     Reprint Icon - (Peer Reviewed Journal)
Du Toit, L.J., Derie, M.L., Christianson, C.E., Hoagland, L., Simon, P.W. 2014. First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae . Plant Disease. 98(5):685.
Genetic analyses of anthocyanin concentrations and intensity of red bulb color among segregating haploid progenies of onion     Reprint Icon - (Peer Reviewed Journal)
Duangjit, J., Welsh, K., Wise, M.L., Bohanec, B., Havey, M.J. 2014. Genetic analyses of anthocyanin concentrations and intensity of red bulb color among segregating haploid progenies of onion. Molecular Breeding. 34(1):75-85.
Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences     Reprint Icon - (Peer Reviewed Journal)
Simon, P.W. 2014. Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences. HortScience. 49(2):112-115.
A method of genotyping by pedigree-based training-set for identification of QTLs associated with cucumber fruit size - (Abstract Only)
Ophir, R., Rubinstein, M., Eshed, R., Katzir, N., Colle, M., Grumet, R., Yang, L., Weng, Y., Sherman, A. 2014. A method of genotyping by pedigree-based training-set for identification of QTLs associated with cucumber fruit size [abstract]. Plant and Animal Genome Conference. Paper No. W237.
Mechanisms of decreasing dysploidy in Cucumis - (Abstract Only)
Yang, L., Koo, D., Li, D., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Casacuberta, J., Senalik, D.A., Simon, P.W., Chen, J., Weng, Y. 2014. Mechanisms of decreasing dysploidy in Cucumis [abstract]. Plant and Animal Genome Conference. Paper No. W233.
Genome-wide characterization of microsatellites in Cucumis hystrix and in silico identification of polymorphic SSR markers - (Abstract Only)
Yang, L., Weng, Y. 2014. Genome-wide characterization of microsatellites in Cucumis hystrix and in silico identification of polymorphic SSR markers [abstract]. Plant and Animal Genome Conference. Paper No. P689.
Sequencing and annotation of the chloroplast DNAs and identification of polymorphisms distinguishing normal male-fertile and male-sterile cytoplasms of onion - (Peer Reviewed Journal)
von Kohn, C., Kielkowska, A., Havey, M.J. 2013. Sequencing and annotation of the chloroplast DNAs and identification of polymorphisms distinguishing normal male-fertile and male-sterile cytoplasms of onion. Genome. 56(12):737-742.
Testing the utility of matK and ITS DNA regions for discrimination of Allium species     Reprint Icon - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2014. Testing the utility of matK and ITS DNA regions for discrimination of Allium species. Turkish Journal of Botany. 38(2):203-212.
Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers     Reprint Icon - (Peer Reviewed Journal)
Grzebelus, D., Iorizzo, M., Senalik, D.A., Ellison, S., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Nothnagel, T., Allender, C., Simon, P.W., Baranski, R. 2014. Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers . Molecular Breeding. 33(3):625-637.
Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene     Reprint Icon - (Peer Reviewed Journal)
Yahyaa, M., Bar, E., Dubey, N.K., Meir, A., Davidovich-Rikanati, J., Hirschberg, J., Ali, R., Tholl, D., Simon, P.W., Tadmor, Y., Lewinsohn, E., Ibdah, M. 2013. Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene. Journal of Agricultural and Food Chemistry. 61(50):12244-12252.
Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis     Reprint Icon - (Peer Reviewed Journal)
Yang, L., Koo, D., Li, D., Zhang, T., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Senalik, D.A., Simon, P.W., Weng, Y., et al. 2014. Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis. Plant Journal. 77(1):16-30.
Last Modified: 4/22/2015
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