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United States Department of Agriculture

Agricultural Research Service

Research Project: EFFICIENCY OF NUTRIENT USE IN CATTLE:IDENTIFICATION OF CRITICAL PHYSIOLOGIC AND GENOMIC REGULATORY PATHWAYS Title: Nutrients and Epigenetics in Bovine Cells

Authors
item Li, Congjun
item Li, Robert
item Elsasser, Theodore

Submitted to: Book Chapter
Publication Type: Book / Chapter
Publication Acceptance Date: December 21, 2010
Publication Date: January 20, 2012
Citation: Li, C., Li, R.W., Elsasser, T.H. 2012. Nutrients and Epigenetics in Bovine Cells. In: Hasan Khatib, Editors. Nutrients and Epigenetics in Bovine Cells. In: Hasan Khatib, Editor. Livestock Epigenetics. New York, NY. Nova Science Publishers. p. 161-177.

Technical Abstract: This is a chapter for a book titled “Livestock Epigenetics” edited by Dr. Hasan Khatib and published by Wiley-Blackwell. This chapter is focused on the research development in our laboratory in the area of interaction of nutrients and genomic phonotype in bovine cells. Briefly, the Research on nutrigenomics, the genome-nutrient interface and epigenomics is in its infancy with respect to livestock species. Ruminant species have evolved to metabolize short-chain fatty acids (VFA) to fulfill up to 70% of their energy requirements. Our studies revealed that VFA, especially butyrate, participate in metabolism as nutrients and as inhibitors of histone deacetylases (HDAC), which are one of the most important types of epigenetic regulators. The detailed mechanisms by which butyrate induces cell growth arrest and apoptosis were analyzed using global gene expression profiles and the Ingenuity Pathways Knowledge Base. Gene expression profiling with high-density oligonucleotide microarrays indicated that butyrate induces many significant changes in the expression of genes associated with many regulatory pathways that are critical to cell growth, immune response and signal transduction. The functional category and pathway analyses of the microarray data revealed that several canonical pathways (Cell cycle: G2/M DNA damage checkpoint; pyrimidine metabolism; Cell cycle: G1/S Checkpoint Regulation; and purine metabolism; insulin-like growth factor axis components) were significantly affected. Butyrate Induced cell cycle arrest in bovine cells through targeting gene expression relevant to DNA replication apparatus. Our results also suggest that IGF2, not IGF1, along with its receptor (IGF2R) played a critical role in regulating cell cycle progression and programmed cell death. These findings provide an example of epigenetic regulation of genome at work and basis for understanding the full range of the biological roles and the molecular mechanisms that butyrate may play in human and animal cell growth, proliferation, and energy metabolism. This is a great research opportunity and exploring this area will provide a better understanding of the role of dietary components in changing epigenetic patterns and certainly will have important impacts on functional genomic research in bovines and in the farm animal industry.

Last Modified: 11/26/2014
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