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ARS Home » Research » Manuscripts by Strategic Topical Areas
Animal Disease Epidemiology
item Investigating the uses of machine learning algorithms to inform risk factor analyses: the example of avian infectious bronchitis virus (IBV) in boiler chickens (Feb 2024)
item Unraveling frontiers in poultry health (part 1) – Mitigating economically important viral and bacterial diseases in commercial chicken and turkey production (Feb 2024)
item Draft genome sequence of a multidrug-resistant pseudomonas aeruginosa strain isolated from a dairy cow with chronic mastitis (Jan 2024)
item African swine fever virus p72 identification tool (Jan 2024)
item How do deer respiratory epithelial cells weather the initial storm of SARS-CoV-2? (Jan 2024)
item Expansion of proteome-wide Coxiella burnetii comparative T-cell epitope prediction to include small ruminant hosts (Dec 2023)
item Efficacy of recombinant H5 vaccines delivered in ovo or day of age in commercial broilers against the 2015 U.S. H5N2 clade 2.3.4.4c highly pathogenic avian influenza virus (Dec 2023)
item Pathogenicity in chickens and turkeys of a 2021 United States H5N1 highly pathogenic avian influenza clade 2.3.4.4b wild bird virus compared to two previous H5N8 clade 2.3.4.4 viruses (Nov 2023)
item Phenotypic characterization of recombinant Marek’s disease virus in live birds validates polymorphisms associated with virulence (Nov 2023)
item Efficacy of inactivated and RNA particle vaccines against a North American clade 2.3.4.4b H5 highly pathogenic avian influenza virus (Nov 2023)
item Whole genomic constellation of avian reovirus strains isolated from broilers with arthritis in North Carolina, USA (Oct 2023)
item Virulent Newcastle disease virus genotypes V.3, VII.2 and XIII.1.1 and their coinfections with infectious bronchitis viruses and other avian pathogens in backyard chickens in Tanzania (Oct 2023)
item Diversity and complexity of internally deleted viral genomes in influenza A virus subpopulations with enhanced interferon-inducing phenotypes (Oct 2023)
item Toll-like receptor ligands enhance vaccine efficacy against a virulent Newcastle disease virus challenge in chickens (Oct 2023)
item Whole genome sequencing of infectious bursal disease viruses isolated from a Californian outbreak unravels the underlying virulence markers and highlights positive selection incidence (Oct 2023)
item Discovery of Influenza A(H7N2) in a cat after admission to an animal shelter: A case report (Oct 2023)
item Modeling long distance airborne transmission of highly pathogenic avian influenza carried by dust particles (Sep 2023)
item Complete genome sequence of seven virulent Newcastle disease virus isolates of sub-genotype XIII.1.1 from Tanzania (Sep 2023)
item Molecular characterization of complete genome sequence of an avian coronavirus identified in a backyard chicken from Tanzania (Sep 2023)
item Optimizing the conditions for whole-genome sequencing of avian reoviruses (Sep 2023)
item Newcastle disease virus (NDV) recombinant expressing Marek’s disease virus (MDV) glycoprotein B protects chickens against MDV and NDV challenges (Sep 2023)
item Morphological and phenotypic characteristics of the bovine nasopharyngeal mucosa and associated lymphoid tissue (Sep 2023)
item Comparative analysis of PB2 residue 627E/K/V in H5 subtypes of avian influenza viruses isolated from birds and mammals (Sep 2023)
item Prediction of highly pathogenic avian influenza vaccine efficacy in chickens by comparison of in vitro and in vivo data: a meta-analysis and systematic review (Aug 2023)
item Molecular characterization and phylogenetic analysis of Marek's disease virus in chickens from Ogun State, Nigeria (Aug 2023)
item Alternative probe hybridization buffers for target RNA depletion and viral sequence recovery in NGS for poultry samples (Aug 2023)
item Genome Sequence of a Multidrug-Resistant Pseudomonas aeruginosa Strain Isolated from a Dairy Cow That was Nonresponsive to Antibiotic Treatment (Aug 2023)
item H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: introductions into the United States and reassortments, December 2021-April 2022 (Aug 2023)
item SARS-CoV-2 utilization of ACE2 from different bat species allows for virus entry and replication in vitro (Jul 2023)
item Exploring the molecular basis of vesicular stomatitis virus pathogenesis in swine: insights from expression profiling of primary macrophages infected with M51R mutant virus (Jun 2023)
item Diverse infectivity, transmissibility and pathobiology of clade 2.3.4.4 H5Nx highly pathogenic avian influenza viruses in chickens (Jun 2023)
item Viral proteogenomic and expression profiling during productive replication of a skin-tropic herpesvirus in the natural host (Jun 2023)
item Deoptimization of FMDV P1 region results in robust serotype-independent viral attenuation (Jun 2023)
item Confirming the absence of parental African swine fever virus as a potential contaminant of recombinant live attenuated ASF vaccines (Jun 2023)
item ASF vaccine candidate ASFV-G-deltaI177l does not exhibit residual virulence in long-term clinical studies (Jun 2023)
item Complete genome sequence of an avian orthoavulavirus 13 strain detected in Ukraine (May 2023)
item Genome sequences and characterization of chicken astrovirus and avian nephritis virus from Tanzanian live bird markets (May 2023)
item Rapid construction of a reverse genetics rescue system for distinct Newcastle disease virus genotypes (May 2023)
item Pathogenesis and transmissibility studies of the ASFV strain currently causing outbreaks in the Dominican Republic (May 2023)
item Complete genome sequences of avian metapneumovirus subtype B vaccine strains from Brazil (May 2023)
item The pathogenesis of a 2022 North American highly pathogenic clade 2.3.4.4b H5N1 avian influenza in mallards (Anas platyrhynchos) (May 2023)
item Impact of Brahman genetics on skin histology characteristics with implications for heat tolerance in cattle (May 2023)
item Efficacy of multivalent recombinant herpesvirus of turkey vaccines against high pathogenicity avian influenza, infectious bursal disease, and Newcastle disease viruses (May 2023)
item Characterization of a novel African swine fever virus p72 genotype II from Nigeria (Apr 2023)
item Heterogeneity and recombination of foot-and-mouth disease virus during multi-strain coinfection of cattle (Apr 2023)
item Classical swine fever virus structural glycoprotein E2 interacts with host protein ACADM during the virus infectious cycle (Apr 2023)
item Effects of the in ovo administration of the 6/85 Mycoplasma gallisepticum vaccine on layer chicken embryo hatchability and early posthatch performance (Mar 2023)
item Development of porcine monoclonal antibodies with neutralizing activity against classical swine fever virus from C-strain E2 specific single B cells (Mar 2023)
item Development of in ovo-compatible NS1-truncated live attenuated influenza vaccines by modulation of hemagglutinin cleavage and polymerase acidic x frameshifting sites (Mar 2023)
item Genome sequencing and characterization of an avian orthoavulavirus 1 VG/GA-like isolate with a unique fusion cleavage site motif (Mar 2023)
item TLR3 and MDA5 knockout DF-1 cells enhance replication of avian orthoavulavirus 1 (Mar 2023)
item Evaluation of potential recombination events in codon deoptimized FMDV strains (Mar 2023)
item Editorial: Insights of important mammalian viruses: Infection, pathogenesis and drugs (Feb 2023)
item Targeted ablation of exon 2 of the Avian Leukosis Virus-A (ALV-A)receptor gene in a chicken fibroblast cell line by CRISPR abrogates ALV-A infection (Feb 2023)
item Whole genome sequencing and phylogenetic analysis of African swine fever virus detected from a backyard pig in Mongolia, 2019 (Feb 2023)
item Vesicular stomatitis Indiana virus near-full-length genome sequences reveal low genetic diversity during the 2019 outbreak in Colorado, USA (Feb 2023)
item The alphaherpesvirus conserved pUS10 is important for natural infection and its expression is regulated by the conserved Herpesviridae protein kinase (CHPK) (Feb 2023)
item Utilizing in ovo telemetry to examine the effects of reduced incubation temperature on broiler embryo temperature and subsequent hatchability (Feb 2023)
item The 28S rRNA RT-qPCR assay for host depletion evaluation to enhance avian virus detection in illumina and nanopore sequencing (Jan 2023)
item Phylogeography as a proxy for population connectivity for spatial modeling of foot-and-mouth disease outbreaks in Vietnam (Jan 2023)
item Effects of the In Ovo administration of L-ascorbic acid on the performance and incidence of corneal erosion in Ross 708 broilers subjected to elevated levels of atmospheric ammonia (Jan 2023)
item Full genome sequence for the African swine fever virus outbreak in the Dominican Republic in 1980 (Jan 2023)
item Genetic diversity of Newcastle disease viruses circulating in wild and synanthropic birds in Ukraine between 2007 and 2015 (Jan 2023)
item Unique variants of avian coronaviruses from indigenous chickens in Kenya (Jan 2023)
item A universal, single-primer amplification protocol to perform whole-genome sequencing of segmented dsRNA avian orthoreoviruses (Jan 2023)
item Analysis of the immune response and identification of antibody epitopes against the sigma C protein of avian orthoreovirus following immunization with live or inactivated vaccines (Jan 2023)
item Variable effects of the in ovo administration of an Escherichia coli vaccine in the amnion or air cell on commercial layer embryo and hatchling development (Dec 2022)
item Evaluation of Newcastle disease virus LaSota strain attenuated by codon pair deoptimization of the HN and F genes for in ovo vaccination (Dec 2022)
item Comparable outcomes from long and short read random sequencing of total RNA for detection of pathogens in chicken respiratory samples (Dec 2022)
item A highly effective African swine fever virus vaccine elicits a memory T cell response in vaccinated swine (Nov 2022)
item Structural predictions of the complete ASFV-G proteome (Nov 2022)
item Deletion of an African swine fever ATP-dependent RNA hel-icase QP509L from the highly virulent Georgia 2010 strain does not affect replication or virulence (Nov 2022)
item Effect of ultraviolet radiation on reducing airborne Escherichia coli carried by poultry litter particles (Nov 2022)
item The presence of virus neutralizing antibodies is highly associated with protection against virulent challenge in domestic pigs immunized with ASFV live attenuated vaccine candidates (Nov 2022)
item Zoonotic potential of influenza A viruses of poultry and other avian species (Nov 2022)
item Mutation of FMDV Lpro residues outside substrate binding domain drives viral attenuation (Oct 2022)
item Mutation of FMDV Lpro H138 reside outside substrate binding domain drives viral attenuation in vitro and in swine (Oct 2022)
item Ability of garlic and ginger oil to reduce Salmonella in post-harvest poultry (Oct 2022)
item Epidemiologic and economic considerations regarding persistently infected cattle during vaccinate-to-live strategies for control of foot-and-mouth disease in FMD-free regions (Oct 2022)
item Effect of Salmonella Typhimurium colonization on microbiome maturation and blood leukocyte populations in broiler chickens (Oct 2022)
item Detection and genome sequence analysis of avian metapneumovirus subtype A viruses circulating in commercial chicken flocks in Mexico (Oct 2022)
item Fast forwarding evolution – accelerated adaptation in a proofreading deficient hypermutator herpesvirus (Oct 2022)
item Vesicular stomatitis virus isolated from a bovine brain sample in Costa Rica. (Sep 2022)
item African Swine Fever Vaccinology: Why Is It Difficult? (Sep 2022)
item Evaluation of potential in vitro recombination events in codon deoptimized FMDV strains (Sep 2022)
item African Swine Fever Vaccinology: Why Is It Difficult? (Sep 2022)
item Foot-and-mouth disease virus SAT1 sequences purified from co-infected Cape buffalo in Kenya (Sep 2022)
item Foot-and-mouth disease virus SAT2 sequences purified from co-infected Cape buffalo in Kenya (Sep 2022)
item The FlagT4G vaccine confers a strong and regulated innate immunity that correlates with early virological protection against Classical swine fever (Sep 2022)
item Effect of Holstein genotype on ex-vivo innate immune response to lipopolysaccharide (LPS) and lipoteichoic acid (LTA) during the periparturient period (Aug 2022)
item ASFV Gene A151R is involved in the process of virulence in domestic swine (Aug 2022)
item Deletion of the EP296R gene from the genome of highly virulent African swine fever virus Georgia 2010 does not affect virus replication or virulence in domestic pigs (Jul 2022)
item Rhesus rotavirus receptor-binding site affects high mobility group box 1 release, altering the pathogenesis of experimental biliary atresia (Jul 2022)
item Foot-and-mouth disease virus serotypes O and A from outbreaks in Pakistan 2011-2012 (Jul 2022)
item Foot-and-mouth disease virus serotypes A and O obtained from subclinically infected Asian buffalo (Bubalus bubalis) in Pakistan (Jul 2022)
item Complete genome sequences of Foot-and-Mouth Disease Viruses of serotype O, EA-2 from cattle in Uganda during 2015-2016 (Jul 2022)
item Genome sequence variations of infectious bronchitis virus serotypes from commercial chickens in Mexico (Jul 2022)
item Deletion of the ASFV dUTPase gene E165R from the genome of highly virulent African swine fever virus Georgia 2010 does not affect virus replication or virulence in domestic pigs (Jun 2022)
item Quantitative regulation of the thermal stability of enveloped virus vaccines by surface charge engineering to prevent the self-aggregation of attachment glycoproteins (Jun 2022)
item Determining hyperimmune serum neutralizing effect on African Swine Fever Virus and serum enhancing effect on extracellular virion infectivity in adherent pig PBMC by flow cytometryg (Jun 2022)
item Determining hyperimmune serum neutralizing effect on African Swine Fever Virus and serum enhancing effect on extracellular virion infectivity in adherent pig PBMC by flow cytometry (Jun 2022)
item Coinfection in the host can result in functional complementation between live vaccines and virulent virus (Jun 2022)
item Foot-and-Mouth Disease virus interserotypic recombination in superinfected carrier cattle (Jun 2022)
item Foot-and-mouth disease virus serotype Asia-1 obtained from subclinically infected Asian buffalo (Bubalus bubalis) in Pakistan (May 2022)
item Foot-and-mouth disease virus Asia-1 lineage Sindh-08 from outbreaks in Pakistan 2011-2012 (May 2022)
item Effects of the In ovo vaccination of the ts-11 strain of mycoplasma gallisepticum in layer embryos and posthatch chicks (Apr 2022)
item Evaluation of the safety profile of the ASFV vaccine candidate ASFV-G-I177L (Apr 2022)
item Viral population diversity during co-infection of foot-and-mouth disease virus serotypes SAT1 and SAT2 in African buffalo in Kenya (Apr 2022)
item Recombinant ASF live attenuated virus strains as experimental vaccine candidates (Apr 2022)
item Effects of the In Ovo injection of L-Ascorbic acid on broiler hatching performance (Apr 2022)
item Optimizing sample collection methods for detection of respiratory viruses in poultry housing environments (Apr 2022)
item The thermal stability of Newcastle disease virus in poultry litter (Apr 2022)
item The conserved Herpesviridae protein kinase (CHPK) of Gallid alphaherpesvirus 3 (GaHV3) is required for horizontal spread and natural infection in chickens (Mar 2022)
item Low pathogenicity H7N3 avian influenza viruses have higher within-host genetic diversity than a closely related high pathogenicity H7N3 virus in infected turkeys and chickens (Mar 2022)
item Phylogenetic analysis, molecular changes, and adaptation to chickens of Mexican lineage H5N2 low-pathogenic avian influenza viruses from 1994 to 2019 (Mar 2022)
item Onset of the humoral immune response of layer chicks vaccinated in ovo with strain F Mycoplasma gallisepticum vaccine and evidence of male-biased mortality (Jan 2022)
item Identification of genetic deletions in ASFV that could be potentially used as targets for the development of DIVA vaccines (Jan 2022)
item Diverse single-stranded DNA viruses identified in chicken buccal swabs (Dec 2021)
item T-bet deficiency attenuates bile duct injury in experimental biliary atresia (Dec 2021)
item Prevalence and molecular characteristics of avian pathogenic Escherichia coli in “No Antibiotics Ever” broiler farms (Dec 2021)
item Deletion of E184L, a Putative DIVA Target from the Pandemic Strain of African Swine Fever Virus, Produces a Reduction in Virulence and Protection against Virulent Challenge (Oct 2021)
item Evaluation of chickens infected with a recombinant virulent NDV clone expressing chicken IL4 (Jul 2021)
item Evaluation of bioaerosol samplers for collecting airborne E. coli carried by dust particles from poultry litter (Jul 2021)
item Pegylated Interferon vs Standard Interferon: a promising biotherapeutic platform to get strong and long-lasting antiviral activity against FMDV (May 2021)
item Evaluation of the deletion of ASFV MGF110-5L-6L on swine virulence and its potential use as a DIVA vaccine marker gene (Feb 2021)
item Expression of chicken leukocyte cell-derived chemotaxin 2 in the embryonic bursa of Fabricius (Jan 2021)
item Complete genome sequence of multidrug-resistant avian pathogenic Escherichia coli strain APEC-O2-MS1170 (Dec 2020)
item Avian pathogenic Escherichia coli and clostridium perfringens: Challenges in no antibiotics ever broiler production and potential solutions (Oct 2020)