Research Microbiologist
Daniel Schlatter
Research Microbiologist
Office Phone: (612) 626-2180
Personal Background
Publications
Disciplinary Areas
Soil Microbiology
Agricultural Microbiomes
Metagenomics
Current Research Focus
Alfalfa Microbiomes
Impacts of Manure Amendments on Soil and Plant Microbiomes
will take you to the publication reprint.)
-(Peer Reviewed Journal)
Castell-Miller, C.V., Kono, T., Ranjan, A., Schlatter, D.C., Samac, D.A., Kimball, J.A. 2024. Interactive transcriptome analyses of Northern Wild Rice (Zizania palustris L.) and Bipolaris oryzae show convoluted communications during the early stages of fungal brown spot development. Frontiers in Plant Science. 15. Article number 1350281. https://doi.org/10.3389/fpls.2024.1350281.
-(Peer Reviewed Journal)
Larsen, L., Schlatter, D.C., Nimpoeno, J., Hines-Snider, C., Samac, D.A. 2023. Rhizosphere and root community analysis of oomycetes associated with poor alfalfa (Medicago sativa) seedling establishment. Phytobiomes Journal. 7(4):526-537. https://doi.org/10.1094/PBIOMES-02-23-0005-R.
-(Peer Reviewed Journal)
Schlatter, D.C., Gamble, J.D., Castle, S.C., Rogers, J., Wilson, M. 2023. Abiotic and biotic drivers of soil fungal communities in response to dairy manure amendment. Applied and Environmental Microbiology. 89(6). Article e01931-22. https://doi.org/10.1128/aem.01931-22.
-(Peer Reviewed Journal)
Yin, C., Schlatter, D.C., Hagerty, C., Hulbert, S.H., Paulitz, T.C. 2023. Disease-induced assemblage of the rhizosphere fungal community in successive plantings of wheat. Phytobiomes Journal. 7 (1):100-112. https://doi.org/10.1094/PBIOMES-12-22-0101-R.
-(Peer Reviewed Journal)
Schlatter, D.C., Gamble, J.D., Castle, S., Rogers, J., Wilson, M. 2022. Abiotic and biotic filters determine the response of soil bacterial communities to manure amendment. Applied Soil Ecology. 180. Article 104618. https://doi.org/10.1016/j.apsoil.2022.104618.
-(Abstract Only)
Yin, C., Barnes, E., Schlatter, D.C., Tringe, S.G., Paulitz, T.C. 2022. Harnessing soil microbiomes for camelina growth in low nitrogen inputs [abstract]. American Phytopathological Society Pacific Division Meeting, June 22-24, 2022. https://doi.org/10.1094/PHYTO-112-8-S2.22.
-(Peer Reviewed Journal)
Schlatter, D.C., Hansen, J.C., Carlson, B.R., Leslie, I.N., Huggins, D.R., Paulitz, T.C. 2022. Are microbial communities indicators of soil health in a dryland wheat cropping system? Applied Soil Ecology. 170. Article 104302. https://doi.org/10.1016/j.apsoil.2021.104302.
Reardon, C.L., Hagerty, C., Klarer, E.R., Klein, A., Machado, S., Melle, C., Paulitz, T.C., Larry, P., Schlatter, D.C., Wuest, S.B. 2021. Soil microbial diversity and activity linked to crop yield and quality in a dryland organic wheat production system. Electronic Publication. Available: https://www.youtube.com/watch?v=E-sqaGpNfKo.
-(Peer Reviewed Journal)
Yin, C., Schlatter, D.C., Kroese, D., Paulitz, T.C., Hagerty, C. 2021. Responses of soil fungal communities to lime application in wheat fields in the Pacific Northwest. Frontiers in Microbiology. 12. Article 576673. https://doi.org/10.3389/fmicb.2021.576763.
-(Peer Reviewed Journal)
Castle, S.C., Samac, D.A., Gutknecht, J.L., Sadowsky, M.J., Rosen, C.J., Schlatter, D.C., Kinkel, L.L. 2021. Impacts of cover crops and nitrogen fertilization on agricultural soil fungal and bacterial communities. Plant and Soil. https://doi.org/10.1007/s11104-021-04976-z.
-(Peer Reviewed Journal)
Yin, C., Vargas, J.M., Schlatter, D.C., Hagerty, C., Hulbert, S., Paulitz, T.C. 2021. Wheat rhizosphere community selection reveals bacteria associated with reduced root disease. Microbiome. 9. Article 86. https://doi.org/10.1186/s40168-020-00997-5.
-(Peer Reviewed Journal)
Castell-Miller, C.V., Schlatter, D.C., Samac, D.A. 2021. Efficiency and profitability of fungicides in controlling Bipolaris diseases and enhancing grain yield in cultivated wild rice (Zizania palustris). Crop Protection. 141. Article 105455. https://doi.org/10.1016/j.cropro.2020.105455.
-(Peer Reviewed Journal)
Schlatter, D.C., Baugher, C., Kahl, K., Johnson-Maynard, J.L., Huggins, D.R., Paulitz, T.C. 2019. Bacterial communities of soil and earthworm casts of native Palouse Prairie remnants and no-till wheat cropping systems. Soil Biology and Biochemistry. 139. https://doi.org/10.1016/j.soilbio.2019.107625.
-(Peer Reviewed Journal)
Schlatter, D.C., Kahl, K., Carlson, B.R., Huggins, D.R., Paulitz, T.C. 2020. Soil acidification modifies soil depth-microbiome relationships in a no-till wheat cropping system.. Soil Biology and Biochemistry. 149. Article 107939. https://doi.org/10.1016/j.soilbio.2020.107939.
-(Peer Reviewed Journal)
Schlatter, D.C., Yin, C., Hulbert, S., Paulitz, T.C. 2020. Core rhizosphere microbiomes of dryland wheat are influenced by location and land use history. Applied and Environmental Microbiology. 86(5):e02135-19. https://doi.org/10.1128/AEM.02135-19.
-(Peer Reviewed Journal)
Essarioui, A., LeBlanc, N.R., Otto-Hanson, L., Schlatter, D.C., Kistler, H.C., Kinkel, L.L. 2020. Inhibitory and nutrient use phenotypes among coexisting Fusarium and Streptomyces populations suggest local coevolutionary interactions in soil. Environmental Microbiology. 22(3):976-985. https://doi.org/10.1111/1462-2920.14782.
-(Peer Reviewed Journal)
Schlatter, D.C., Hansen, J.C., Schillinger, W.F., Sullivan, T.S., Paulitz, T.C. 2019. Common and unique rhizosphere microbial communities of wheat and canola in a semiarid Mediterranean environment. Soil Biology and Biochemistry. 144:170-181. https://doi.org/10.1016/j.apsoil.2019.07.010.
-(Peer Reviewed Journal)
Schlatter, D.C., Reardon, C.L., Maynard-Johnson, J.L., Brooks, E., Kahl, K.B., Norby, J., Huggins, D.R., Paulitz, T.C. 2019. Mining the drilosphere: bacterial communities and denitrifier abundance in a no-till wheat cropping system. Frontiers in Microbiology. 10:1339. https://doi.org/10.3389/fmicb.2019.01339.
-(Peer Reviewed Journal)
Schlatter, D.C., Paul, N.C., Shah, D.H., Schillinger, W.F., Bary, A.L., Sharratt, B.S., Paulitz, T.C. 2019. Biosolids and tillage practices influence soil bacterial communities in dryland wheat. Microbial Ecology. 78(3):737-752. https://doi.org/10.1007/s00248-019-01339-1.
-(Peer Reviewed Journal)
Knerr, A., Wheeler, D., Schlatter, D.C., Sharma-Poudyal, D., Du Toit, L.J., Paulitz, T.C. 2019. Arbuscular mycorrhizal fungal communities in organic and conventional onion crops in the Columbia Basin of the Pacific Northwest United States. Phytobiomes Journal. 2(4):194-207. https://doi.org/10.1094/PBIOMES-05-18-0022-R.
-(Peer Reviewed Journal)
Schroeder, K.L., Schlatter, D.C., Paulitz, T.C. 2018. Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest. Applied Soil Ecology. 130:59-68. https://doi.org/10.1016/j.apsoil.2018.05.019.
Schlatter, D.C., Schillinger, W.F., Bary, A.I., Sharratt, B.S., Paulitz, T.C. 2018. Dust-associated microbiomes from dryland wheat fields differ with tillage practice and biosolids application. Atmospheric Environment. 185:29-40.
-(Peer Reviewed Journal)
Schlatter, D.C., Kahl, K., Carlson, B.R., Huggins, D.R., Paulitz, T.C. 2018. Fungal community composition and diversity vary with soil depths and landscape position in a no-till wheat cropping system. FEMS Microbiology Ecology. 94:1-15. https://doi.org/10.1093/femsec/fiy098.
Schlatter, D.C., Burke, I., Paulitz, T.C. 2018. Succession of fungal and oomycete communities in glyphosate-killed wheat roots. Phytopathology. 108:582-594.
-(Peer Reviewed Journal)
Schlatter, D.C., Yin, C., Hulbert, S., Burke, I., Paulitz, T.C. 2017. Location, root proximity, and glyphosate-use history modulate the effects of glyphosate on fungal community networks of wheat. Microbial Ecology. https://doi.org/10.1007/s00248-017-1113-9.
-(Peer Reviewed Journal)
Schlatter, D.C., Yin, C., Hulbert, S., Burke, I., Paulitz, T.C. 2017. Subtle impacts of repeated glyphosate use on wheat-associated bacteria are small and depend on glyphosate use history. Applied and Environmental Microbiology. https://doi.10.1128/AEM.01354-17.
Schlatter, D.C., Schillinger, W.F., Bary, A.I., Sharratt, B.S., Paulitz, T.C. 2017. Biosolids and conservation tillage: Impacts on soil fungal communities in dryland wheat-fallow cropping systems. Soil Biology and Biochemistry. 115:556-567.
-(Peer Reviewed Journal)
Sharma-Poudyal, D., Schlatter, D.C., Yin, C., Hulbert, S., Paulitz, T.C. 2017. Long-term no-Till: A major driver of fungal communities in dryland wheat cropping systems. PLoS One. https://doi.org/10.1371/journal.pone.0184611.
-(Peer Reviewed Journal)
Paulitz, T.C., Schlatter, D.C., Kinkel, L., Thomashow, L.S., Weller, D.M. 2017. Disease suppressive soils: New insights from the soil microbiome. Phytopathology. 107(11):1284-1297. https://doi.org/10.1094/PHYTO-03-17-0111-RVW.
Paulitz, T.C., Knerr, A.J., Carmody, S.M., Schlatter, D.C., Sowers, K., Derie, M.L., Du Toit, L.J. 2017. First report of Leptosphaeria maculans and Leptosphaeria biglobosa, causal agents of blackleg, on canola in Washington State. Plant Disease. 101:504-505.
Poudel, A., Jumpponen, A., Schlatter, D.C., Paulitz, T.C., Mcspadden Gardener, B., Kinkel, L.L., Garrett, K.A. 2016. A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology. 106:1083-1096.
Expanding Resiliency and Utility of Alfalfa in Agroecosystems In-House Appropriated (D) Accession Number:445054 Drought Shapes the Dryland Root Metabolome and Microbiome to Protect Against Biotic and Abiotic Stress Reimbursable Cooperative Agreement (R) Accession Number:445498
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