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2021
Garvin, D.F., Dykes, L. 2021. Evaluating milling and baking quality associated with a Fusarium head blight resistance-enhancing genome deletion in wheat. Cereal Research Communications. 2021:1-7. https://doi.org/10.1007/s42976-020-00122-0. [PDF]
2020
Hu, H., Gutierrez-Gonzalez, J.L., Liu, X., Yeats, T.H., Garvin, D.F., Hoekenga, O.A., Sorrels, M.E., Gore, M.A., Jannink, J. 2020. A new oat seed transcriptome identifies heritable temporal gene expression patterns in developing seeds of hexaploid oat. Plant Biotechnology Journal. 18(5):1211-1222. https://doi.org/10.1111/pbi.13286. [PDF]
2019
Della Coletta, R., Hirsch, C.N., Rouse, M.N., Lorenz, A., Garvin, D.F. 2019. Genetic dissection of nonhost resistance to wheat stem rust in Brachypodium distachyon. Molecular Plant-Microbe Interactions. 32(4):392-400. https://doi.org/10.1094/MPMI-08-18-0220-R. [PDF]
Ondo, Y., Sawada, Y., Shimizu, M., Takahagi, K., Uehara-Yamaguchi, Y., Hirai, M., Garvin, D.F., Mochida, K. 2019. Identification of a putative pyridoxamine 5'-phosphate oxidase gene linked with 4-pyridoxate accumulation in seeds of Brachypodium distachyon through metabolite quantitative trait locus mapping. International Journal of Molecular Sciences. 20(9):2348. https://doi.org/10.3390/ijms20092348. [PDF]
2018
Kolmer, J.A., Garvin, D.F., Hayden, M., Spielmeyer, W. 2018. Adult plant leaf rust resistance derived from the wheat landrace cultivar Americano 44d is conditioned by interaction of three QTL. Euphytica. 214:59. https://doi.org/10.1007/s10681-018-2141-3. [PDF]
2017
Jiang, Y., Wang, X., Yu, X., Zhao, X., Luo, N., Pei, Z., Liu, H., Garvin, D.F. 2017. Quantitative trait loci associated with drought tolerance in Brachypodium distachyon. Frontiers in Plant Science. 8(811):1-11. https://doi.org/10.3389/fpls.2017.00811. [PDF]
Gutierrez-Gonzalez, J.J., Garvin, D.F. 2017. De novo transciptome assembly in polyploid species. In: Gasparis, S. Oat. Methods and Protocals. Vol 1536 New York, NY: Spinger. p.209-221. [PDF]
Woods, D., Bednark, R., Bouche, F., Gordon, S., Vogel, J., Garvin, D.F., Amasino, R. 2017. Genetic architecture of flowering time variation in Brachypodium distachyon. Plant Physiology. 173:269-279. [PDF]
2016
Cass, C.L., Lavell, A.A., Santoro, N., Foster, C.E., Karlen, S.D., Smith, R., Ralph, J., Garvin, D.F., Sedbrook, J.C. 2016. Cell wall composition and biomass recalcitrance differences within a set of Brachypodium distachyon inbred lines. Frontiers in Plant Science. 7(708):1-16. [PDF]
Gutierrez-Gonzalez, J., Garvin, D.F. 2016. Subgenome-specific assembly of vitamin E biosynthesis genes and expression patterns during seed development provide insight into the evolution of the oat genome. Plant Biotechnology Journal. 14(11):2147-2157. [PDF]
Des Marais, D.L., Razzaque, S., Hernandez, K.M., Garvin, D.F., Juenger, T.E. 2016. Quantitative trait loci associated with natural diversity in water-use efficiency and response to soil drying in Brachypodium distachyon. Plant Science. 251:2-11. https://doi.org/10.3389/fpls.2017.00811 [PDF]
2015
Garvin, D.F., Porter, H., Blankenheim, Z., Chao, S., Dill-Macky, R. 2015. A spontaneous segmental deletion from chromosome arm 3DL enhances Fusarium head blight resistance in wheat. Genome. 58(11):479-488. [PDF]
Zhong, S., Ali, S., Leng, Y., Wang, R., Garvin, D.F. 2015. Brachypodium distachyon-Cochliobolus sativus pathosystem is a new model for studying plant-fungal interactions in cereal crops. Phytopathology. 105(4):482-489. [PDF]
Garvin, D.F. 2015. Brachypodium distachyon genetic resources. In: Vogel J.P. editor. Genetics and Genomics of Brachypodium. Springer International: Gewerbestrasse, Switzerland. p. 183-195. [PDF]
2014
Gordon, S.P., Priest, H., Des Marais, D., Schackwitz, W., Figueroa, M., Martin, J., Bragg, J., Tyler, L., Lee, C., Bryant, D., Wang, W., Messing, J., Manzaneda, A., Barry, K., Garvin, D.F., Budak, H., Tuna, M., Mitchell-Olds, T., Pfender, W.F., Juenger, T., Mockler, T., Vogel, J.P. 2014. Genome diversity in Brachypodium distachyon: Deep sequencing of highly diverse inbred lines. Plant Journal. 79:361-374. [PDF]
Faris, J.D., Zhang, Z., Garvin, D.F., Xu, S.S. 2014. Molecular and comparative mapping of genes governing spike compactness inherited from wild emmer wheat. Molecular Genetics and Genomics. 289:641-651. [PDF]
Graybosch, R.A., Bockelman, H., Garland-Campbell, K., Garvin, D.F., Regassa, T. 2014. Wheat. In: Smith, S., Diers, B., Specht, J., Carver, B., editors. Yield Gains in Major U.S. Field Crops. CSSA Special Publications 33. Madison, WI: American Society of Agronomy, Inc., Crop Science Society of America, Inc., and Soil Science Society of America, Inc. p. 459-487.
2011 - 2013
Jeong, D., Schmidt, S.A., Rymarquis, L.A., Park, S., Ganssmann, M., German, M.A., Accerbi, M., Zhai, J., Depaoli, E., Fahlgren, N., Fox, S.E., Garvin, D.F., Mockler, T.C., Carrington, J.C., Meyers, B.C., Green, P.J. 2013. Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. Genome Biology. 14:R145. [PDF]
Gutierrez-Gonzalez, J.J., Tu, Z., Garvin, D.F. 2013. Analysis and annotation of the hexaploid oat seed transcriptome. Biomed Central (BMC) Genomics. 14:471. [PDF]
Figueroa, M., Alderman, S.C., Garvin, D.F., Pfender, W.F. 2013. Infection of Brachypodium distachyon by formae speciales of Puccinia graminis: Early infection events and host-pathogen incompatibility. PLoS One. 8(2):e56857. [PDF]
Gutierrez-Gonzalez, J.J., Wise, M.L., Garvin, D.F. 2012. A developmental profile of tocol accumulation in oat seeds. Journal of Cereal Science. 57(1):79-83. [PDF]
Cui, Y., Lee, M.Y., Huo, N., Bragg, J., Yan, L., Yuan, C., Li, C., Holditch, S.J., Xie, J., Luo, M.C., Li, D., Yu, J., Martin, J., Schackwitz, W., Gu, Y.Q., Vogel, J.P., Jackson, A.O., Liu, Z., Garvin, D.F. 2012. Fine mapping of the Bsrl barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon. PLoS One. 7:e38333. [PDF]
Barbieri, M., Marcel, T., Niks, R., Francia, E., Pasquariello, M., Mazzamurro, V., Garvin, D.F., Pecchioni, N. 2012. QTLs for resistance to the false brome rust Puccinia brachypodii in the model grass Brachypodium distachyon L. Genome. 55(2):152-163. [PDF]
Barrero, J.M., Jacobsen, J.V., Talbot, M.J., White, R.G., Swain, S.M., Garvin, D.F., Gubler, F. 2012. Grain dormancy and light quality effects on germination in the model grass Brachypodium distachyon. New Phytologist. 193(1):376-386. [PDF]
Brkljacic, J., Grotewold, E., Scholl, R., Mockler, T., Garvin, D.F., Vain, P., Brutnell, T., Sibout, R., Bevan, M., Budak, H., Caicedo, A.L., Gao, C., Gu, Y.Q., Hazen, S.P., Holt, B.F., Hong, S., Jordan, M., Manzaneda, A.J., Mitchell-Olds, T., Mochida, K., Mur, L.A., Park, C., Sedbrook, J., Watt, M., Zheng, S., Vogel, J.P. 2011. Brachypodium as a model for the grasses: Today and the future. Plant Physiology. 157(1):3-13. [PDF]
Gutierrez-Gonzalez, J.J., Garvin, D.F. 2011. Reference genome-directed resolution of homologous and homeologous relationships within and between different oat linkage maps. The Plant Genome. 4(3):178-190. [PDF]
Huo, N., Garvin, D.F., You, F., McMahon, S.A., Luo, M., Gu, Y.Q., Lazo, G.R., Vogel, J.P. 2011. Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon. Theoretical and Applied Genetics. 123(3):455-464. [PDF]
Garvin, D.F., Hareland, G.A., Gregoire, B.R., Finley, J.W. 2011. Impact of wheat grain selenium content variation on milling and bread baking. Cereal Chemistry. 88(2):195-200. [PDF]
Kolmer, J.A., Garvin, D.F., Jin, Y. 2011. Expression of a Thatcher wheat adult plant stem rust resistance QTL on chromosome arm 2BL is enhanced by Lr34. Crop Science. 51(2):526-533. [PDF]
2006 - 2010
Vogel, J.P., Garvin, D.F., Gu, Y.Q., Lazo, G.R., Anderson, O.D., Bragg, J.N., Chingcuanco, D.L., Weng, Y., Belknap, W.R., Thomson, J.G., Dardick, C.D., Baxter, I.R. 2010. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature. 463:763-768. [PDF]
Garvin, D.F., Mckenzie, N., Vogel, J.P., Mockler, T.C., Blankenheim, Z., Wright, J., Huo, N., Cheema, J.J., Dicks, J., Hayden, D.M., Gu, Y.Q., Tobias, C.M., Chang, J.H., Chu, A., Trick, M., Michael, T.P., Bevan, M.W., Snape, J.W. 2010. An SSR-Based Genetic Linkage Map of the Model Grass Brachypodium distachyon. Genome. 53(1):1-13. [PDF]
Garvin, D.F., Stack, R.W., Hansen, J.M. 2009. Quantitative Trait Locus Mapping of Increased Fusarium Head Blight Susceptibility Associated with a Wild Emmer Wheat Chromosome. Phytopathology. 99(4):447-452. [PDF]
Chandran, D., Sharopova, N., Vandenbosch, K.A., Garvin, D.F., Samac, D.A. 2008. Physiological and Molecular Characterization of Aluminum Resistance in Medicago truncatula. Biomed Central (BMC) Plant Biology. 8:89. [PDF]
Bolton, M.D., Kolmer, J.A., Xu, W., Garvin, D.F. 2008. Lr34-Mediated Leaf Rust Resistance in Wheat: Transcript Profiling Reveals a High Energetic Demand Supported by Transient Recruitment of Multiple Metabolic Pathways. Molecular Plant-Microbe Interactions. 21(12):1515-1527. [PDF]
Bolton, M.D., Kolmer, J.A., Garvin, D.F. 2008. Wheat Leaf Rust Caused by Puccinia triticina. Molecular Plant Pathology. 9(5):563-575. [PDF]
Kolmer, J.A., Singh, R.P., Garvin, D.F., Viccars, L., William, H.M., Huerta-Espino, J., Ogbonnaya, F.C., Raman, H., Orford, S., Bariana, H.S., Lagudah, E.S. 2008. Analysis of the Lr34/Yr18 Rust Resistance Region in Wheat Germplasm. Crop Science. 48(5):1841-1852. [PDF]
Vanegas, C.D., G., Kolmer, J.A., Garvin, D.F. 2008. Genetics of stem rust resistance in the spring wheat cultivar thatcher and the enhancement of stem rust resistance by Lr34. Euphytica. 159(3):391-401. [PDF]
Garvin, D.F., Gu, Y.Q., Hasterok, R., Hazen, S.P., Jenkins, G., Mockler, T.C., Mur, L.A., Vogel, J.P. 2008. Development of genetic and genomic research resources for Brachypodium distachyon, a new model system for grass crop research. The Plant Genome. 48:S69-S84. [PDF]
Bilgic, H., Cho, S., Garvin, D.F., Muehlbauer, G.J. 2007. Mapping barley genes to chromosome arms by transcript profiling of wheat-barley ditelosomic chromosome addition lines. Genome. 50:898-906. [PDF]
Van Eck, J., Conlin, B., Garvin, D.F., Mason, H., Navarre, D.A., Brown, C.R. 2007. Enhancing beta-carotene content in potato by RNAi-mediated silencing of the b-carotene hydroxylase gene. American Journal of Potato Research. 84:331-342. [PDF]
Garvin, D.F. 2007. Brachypodium: A new monocot model plant system emerges. Journal of the Science of Food and Agriculture. 87:1177-1179. [PDF]
Reeves, P.G., Gregoire, B.R., Garvin, D.F., Hareland, G.A., Lindlauf, J.E., Johnson, L.K., Finley, J.W. 2007. Determination of selenium bioavailability from wheat mill fractions in rats by using the slope-ratio assay and a modified Torula yeast-based diet. Journal of Agricultural and Food Chemistry. 55:516-522. https://doi.org/10.1021/jf062572u
Garvin, D.F. 2007. Brachypodium distachyon - A new model system for structural and functional analysis of grass genomes. In: Varshney, R.K., Koebner, R.M.D., editors. Model Plants and Crop Improvement. Boca Raton, FL: CRC Press. p. 109-124.
Li, L., Lu, S., Van Eck, J., O'Halloran, D., Zhou, X., Lopez, A.B., Cosman, K., Conlin, B., Paolillo, D., Garvin, D.F., Vrebalov, J., Kochian, L.V., Kupper, H., Earle, E., Cao, J. 2006. The cauliflower or gene encodes a cysteine-rich zinc finger domain-containing protein that induces high-level of B-carotene accumulation. The Plant Cell. 18:3594-3605. [PDF]
Gu, Y., Lazo, G., Vogel, J., Coleman-Derr, D., Luo, M.C., Thilmony, R., Garvin, D., Anderson, O., Huo, N. 2006. Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics. Genome. 49(9):1099-1108. [PDF]
Li, L., Lu, S., Cosman, K., Earle, E., Garvin, D.F., O'Neill, J. 2006. B-carotene accumulation induced by the cauliflower or gene is not due to an increased capacity of biosynthesis. Phytochemistry. 67:1177-1184. [PDF]
Garvin, D.F., Welch, R.M., Finley, J.W. 2006. Historical shifts in the seed mineral micronutrient concentration of U.S. hard red winter wheat germplasm. Journal of the Science of Food and Agriculture. 86:2213-2220. [PDF]
Cho, S., Garvin, D.F., Muehlbauer, G.J. 2006. Transcriptome analysis and physical mapping of barley genes in wheat-barley chromosome addition lines. Genetics. 172:1277-1285. [PDF]
Vogel, J.P., Garvin, D.F., Leong, O.M., Hayden, D.M. 2006. Agrobacterium-mediated transformation and inbred line development in the model grass Brachypodium distachyon. Plant Cell Tissue And Organ Culture. 84:199-211. [PDF]
Mackintosh, C.A., Garvin, D.F., Radmer, L.E., Heinen, S.J., Muehlbauer, G.J. 2006. A model wheat cultivar for transformation to improve resistance to Fusarium head blight. Plant Cell Reports. 25:313-319. [PDF]
Raman, H., Zhang, K., Maron, L., Kochian, L.V., Garvin, D.F., Sasaki, T., Yamamoto, Y., Matsumoto, H., Delhaize, E., Ryan, P. 2005. Molecular characterization and mapping of ALMT1, the aluminum-tolerance gene of bread wheat (Triticum aestivum l.). Genome. 48:781-791. [PDF]
Magalhaes, J., Garvin, D.F., Wang, Y., Sorrells, M.E., Klein, P.E., Schaffert, R., Li, L., Kochian, L.V. 2004. Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the poaceae. Genetics Society of America. 167:1905-1914. [PDF]
Paolillo, D.J., Jr., Garvin, D.F., Parthasarathy, M.V. 2004. The chromoplasts of Or mutants of cauliflower (Brassica oleracea L. var. botrytis). Protoplasma. 224:245-253. [PDF]
2005 and Earlier
Raman, H., Zhang, K., Maron, L., Kochian, L.V., Garvin, D.F., Sasaki, T., Yamamoto, Y., Matsumoto, H., Delhaize, E., Ryan, P. 2005. Molecular characterization and mapping of almt1, the aluminum-tolerance gene of bread wheat (Triticum aestivum l.). Genome. 48:781-791. [PDF]
Magalhaes, J., Garvin, D.F., Wang, Y., Sorrells, M.E., Klein, P.E., Schaffert, R., Li, L., Kochian, L.V. 2004. Comparative mapping of a major aluminum tolerance gene in sorghum and other species in the poaceae. Genetics Society of America. 167:1905-1914. [PDF]
Paolillo, D.J., Jr., Garvin, D.F., Parthasarathy, M.V. 2004. The chromoplasts of Or mutants of cauliflower (Brassica oleracea L. var. botrytis). Protoplasma. 224:245-253. [PDF]
Cohen, C.K., Garvin, D.F., Kochian, L.V. 2004. Kinetic properties of a micronutrient transporter from Pisum sativum indicate a primary function in Fe uptake from the soil. Planta. 218:784-792. [PDF]
Li, L., Lu, S., O'Halloran, D., Garvin, D., Vrebalov, J. 2003. High-resolution genetic and physical mapping of the cauliflower high-beta-carotene gene Or (Orange). Molecular Genetics and Genomics. 270:132-138. [PDF]
Li, L., Garvin, D. 2003. Molecular mapping of Or, a gene inducing beta-carotene accumulation in cauliflower (Brassica oleracea L. var. botrytis). Genome. 46:588-594. [PDF]
Raman, H., Karakousis, A., Moroni, J.S., Raman, R., Read, B.J., Garvin, D.F., Kochian, L.V., Sorrells, M.E. 2003. Development and allele diversity of microsatellite markers linked to the aluminum tolerance gene Alp in barley. Australian Journal of Agricultural Research. 54:1315-1321. [PDF]
Wang, Y., Kochian, L., Doyle, J., Garvin, D. 2002. Two tomato non-symbiotic hemoglobin genes are differentially expressed in response to diverse changes in mineral nutrient status. Plant Cell and Environment. 26:673-680. [PDF]
Wang, Y., Garvin, D., Kochian, L. 2002. Rapid induction of regulatory and transporter genes in response to phosphorus, potassium and iron deficiencies in tomato roots. Evidence for cross talk and root/rhizosphere-mediated signals. Plant Physiology. 130:1361-1370. [PDF]
Kochian, L., Pence, N., Letham, D., Pineros, M., Magalhaes, J., Hoekenga, O., Garvin, D. 2002. Mechanisms of metal resistance in plants: Aluminum and heavy metals. Plant and Soil. 247:109-119. [PDF]
Garvin, D., Kochian, L., Tang, Y., Sorrells, M., Carver, B. 2002. Physiological genetics of aluminum tolerance in the wheat cultivar atlas 66. Crop Science. 42:1541-1546. [PDF]
Garvin, D., Carver, B. 2002. Role of the genotype in tolerance to acidity and aluminum toxicity. Handbook of Soil Acidity.
Garvin, D., Smith, K., Raman, H. 2002. Barley.
Wang, Y., Garvin, D., Kochian, L. 2001. Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition. Plant Physiology. 127:345-359. [PDF]
Garvin, D., Li, L., Parthasarathy, M., Paollilo, D., Dimuzio, E. 2001. A novel gene mutation that confers abnormal patterns of beta-carotene accumulation in cauliflower (Brassica oleracea L. Var. Botrytis). Plant Journal. 26(1):59-67. [PDF]
Pence, N., Larsen, P., Ebbs, S., Letham, D., Lasat, M., Garvin, D., Eide, D., Kochain, L. 2000. The molecular physiology of heavy metal transport in the Zn/Cd hypervaccumulator, Thlaspi caerulescens. Proceedings of the National Academy of Sciences. 97(9):4956-4960. [PDF]
Lasat, M., Pence, N., Garvin, D., Ebbs, Kochian, L. 2000. Molecular physiology of zinc transport in the Zn hyperaccumulator, Thlaspi caerulescens. Journal of Experimental Botany. 51(342):71-79. [PDF]
Tang, Y., Sorrells, M., Garvin, D., Kochian, D. 1999. Identification of RFLP markers linked to the barley aluminum tolerance gene Alp. Crop Science. 40:778-782. [PDF]
Garvin, D., Brown, A., Raman, H., Read, B. 1999. Genetic mapping of the barley Rrs14 scald resistance gene with RFLP, isozyme, and seed storage protein markers. Plant Breeding. 119:193-196. [PDF]
Cohen, C., Fox, T., Garvin, D., Kochian, L. 1998. The role of iron-deficiency stress response in stimulating heavy-metal transport in plants. Plant Physiology. 116:1063:1072. [PDF]
Review Articles
Catalan, P., Chalhoub, B., Chochois, V., Garvin, D.F., Hasterok, R., Manzaneda, A.J., Mur, L.A., Pecchioni, N., Rasmussen, S., Vogel, J.P., Voxeur, A. 2014. Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI). Trends in Plant Science. 19:414-418. [PDF]
Bevan, M.W., Garvin, D.F., Vogel, J.P. 2010. Brachypodium distachyon genomics for sustainable food and fuel production. Current Opinion in Biotechnology. 21:211-217. [PDF]
Kochian, L., Garvin, D. 1999. Agricultural approaches to improving phytonutrient content in plants: An overview. Nutrition Reviews. [PDF]
