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» AIP
» Software
» AIP Software
AIP software
Packages
| FACTORS | A program to apply new factors for age, parity, season, and previous days open to compare cows more fairly within herds. Age-Parity-Season-PreviousDaysOpen Adjustment Factors and Software - 2024 (contact: Gary Fok) |
| BESTPRED | A set of programs for best prediction of lactation yields (contact: John Cole) |
| ConvertCufflinksToExcel | A program to convert Cufflinks output files into easily readable Microsoft Excel tables using Apache's POI library (only "cuffdiff" output format currently supported; contact: Derek Bickhart) |
| FINDHAP | A program to find haplotypes and impute genotypes from multiple marker sets and sequence data (contact: Paul VanRaden) |
| FINDMAP | A program to align sequence reads to reference map, call previous variants, and identify new variants (contact: Paul VanRaden) |
| FIXPED | A program to check pedigree relationships and discover additional relatives (contact: Juan Nani) |
| GENOSIM | A set of programs to simulate genotypes, breeding values, phenotypes, and DNA sequence read depth and to resolve SNP conflicts between parent and offspring genotypes (contact: Paul VanRaden) |
| MTDFREML | A set of programs for estimation of genetic (co)variances using multiple-trait derivative-free restricted maximum likelihood (contact: Curt Van Tassell) |
| MTGSAM | A multiple-trait Gibbs sampler for animal models (contact: Curt Van Tassell) |
Licenses
All AIP software is in the public domain and may be modified and redistributed at will.
