Research Plant Pathologist
Soilborne pathogen lab research foci:
- Evolutionary genomics & functional genetics. We use comparative, population, and functional genomics to investigate the evolutionary history of fungal pathogens. Our objectives are to fundamentally improve our understanding of the mechanisms leading to the evolution of pathogenicity. We leverage our genomic and transcriptomic resources to assess the breadth and durability of pathogen resistance in strawberry cultivars, improve molecular detection methods, and survey for the emergence of new pathogenic lineages.
- Pathogen ecology. Plant pathology research typically focuses on the interactions between a pathogen and its susceptible host. Plant pathogens also have myriad interactions with other plants, microbes, etc. that can be key to their persistence, virulence, or other important traits. Our research attempts to determine the niches occupied by plant pathogens that can lead to increased abundances in agricultural environments. By characterizing the contribution of these niches to pathogen survival, we identify key lifecycle stages that can be disrupted to reduce pathogen abundance with environmentally sustainable methods.
- Fumigation alternatives. Soilborne pathogens of strawberries are typically managed with soilborne fumigants that can pose risks to human health and the environment. We are developing alternative methods for control of soilborne pathogens. We are working with the public and private breeding programs to evaluate cultivars and breeding material for disease resistance. In addition, we are refining techniques for anaerobic soil disinfestation (ASD), evaluating new soil steam devices, and determining the effects of crop rotation and cover cropping on pathogen survival in soil.
Current lab members:
Peter Henry (2019-present). Peter started the Soilborne pathogen lab at the USDA-ARS in Salinas, CA in 2019 after receiving his Ph.D. in Plant Pathology from the University of California, Davis. His interest in agriculture began while studying for a B.A. in Environmental Science from Willamette University, where he managed a student farm for two years after graduation. He enjoys hiking and appreciating the diversity of wildflowers in Big Sur.
Polly Goldman (2019-present). Polly started as a Biological Science Technician at the USDA-ARS in 2002 after receiving her B.S. in Biochemistry from the University of California, Davis, and M.S. in Agroecology from the University of California, Santa Cruz. She is passionate about sustainable agriculture and runs variety trials for small grains and legumes for fun.
Anna Herrera (2024-present). Anna joined the lab as a Biological Science Technician in 2024. She received her B.S. in Molecular Biology from San Jose State University and her M.S. in Environmental Science from California State University, Monterey Bay. She is an outdoor enthusiast and recently ran the Big Sur Marathon.
Jade Dilla-Ermita (2021-present). Jade is a University of California, Davis post-doctoral researcher working in the Soilborne Pathogen Lab. She is co-advised by Dr. Henry and Dr. Feldmann from the UCD Strawberry Breeding Program. She brings experience working on host-pathogen interactions from her M.S. in Genetics at the University of the Philippines, Los Baños, and her Ph.D. in Plant Pathology from Washington State University. She is a culinary enthusiast and is always testing new recipes with the lab.
Kayla Pennerman (2022-present). Kayla is a post-doctoral researcher with the SCINet Fellowship program administered through ORISE. Her work focuses on characterizing the factors driving genomic diversity of Macrophomina spp. She received her Ph.D. in Plant Biology from Rutgers University and is an expert bioinformatician. She will start a new position as an Assistant Professor at Stockton University in New Jersey in September 2024.
Gabriel Sacher (2023-present). Gabriel is a post-doctoral researcher co-advised by Nicholas LeBlanc (USDA-ARS) and Sharifa Crandall (Pennsylvania State University). He is characterizing the epidemiological implications of airborne spore dispersal by Fusarium oxysporumf.sp. fragariae. Gabriel received his B.S. in Biology from Sonoma State University and Ph.D. in Plant Pathology from Oregon State University. [statement about interest] You can usually find him taking care of his plants or engaged in some wood working. He dreams of one day operating a small hobby farm or plant nursery.
Jose Jaime (2022-present). Jose brought a wealth of experience in agricultural research from projects in Colombia and working with agriculture technology companies in the Salinas Valley. He joined as a student at California State University, Monterey Bay, and recently completed his B.S. in Plant Science.
Javier Lopez-Hernandez (2023-present). After completing his B.S. in Molecular Biology at California State University, Monterey Bay, Javier worked as an intern for Naturipe and became interested in agricultural research. He started working in the lab to gain experience in research and is also pursuing a career in medicine.
Erika Padilla-Huerta (2024-present). Erika received an A.S. in Agriculture Plant Science and an A.S. in Public Health Science from Hartnell College, and is currently working in the lab while pursuing her B.S. in Agricultural Plant and Soil Sciences from California State University Monterey Bay.
Samantha Kozlo (2024-present). Samantha has conducted research monitoring greenhouse gas emissions in agricultural settings and is currently working in the lab while pursuing her B.S. in Environmental Science, Technology, and Policy from California State University Monterey Bay.
Lacey Prescott (2024-present). Lacey joined the lab as a Hartnell Student Intern while pursuing her A.S. in Biology and will be transferring to California State University Monterey Bay to pursue her B.S. in Plant Science.
Former Lab Members:
Gerardo Ramos (2021-2023). Gerardo brought a wealth of expertise on Geographic Information Systems from his B.S. in Environmental Science at California State University, Monterey Bay, and led a project quantifying rates of crop rotation in the California strawberry industry with the lab. He moved on from the lab to pursue an M.S. in Landscape Ecology at San Francisco State University.
Zoey Jimenez (2021-2023). Zoey worked in the lab during the summers while pursuing a B.S. at Chico State University in Animal Science. She now works in a Veterinary Clinic while preparing applications for Doctor in Veterinary Medicine programs.
Jacqueline Ramos (2023). Jacqueline Ramos brought multilingual and multi-talented abilities to the lab during a summer while pursuing a B.S. in Environmental Science with a minor in French at the University of California, Berkeley.
Sara Infante (2021-2022). Sara explored her interests in agriculture while working in the lab and studying for her B.S. in Plant Science at California State University, Monterey Bay.
Geovanny Espinosa (2021-2022). Geovanny joined the lab after finishing his B.S. in Environmental Science at California State University, Monterey Bay. He now works in the vegetable production industry in the Salinas Valley.
Olivia Gutierrez (2020-2022). Olivia joined the lab as a Hartnell College student before transferring to California Polytechnic University in San Luis Obispo. She continued working in the lab during summers between classes at Cal Poly and now has a career in plant pathogen diagnostics.
Shawn Melendy (2020-2021). Shawn joined the lab after receiving a B.S. in Biochemistry from the University of Oregon. Shawn then received an M.S. in Applied Environmental Science at California State University Monterey Bay and is now an Academic Writer in Canada.
- (Clicking on the reprint icon will take you to the publication reprint.)
- Geospatial analysis of California strawberry fields reveals regional differences in crop rotation patterns and the potential for lengthened rotations at current levels of production -(Peer Reviewed Journal)
Ramos, G., Goldman, P.H., Sharrett, J., Sacher, G.O., Pennerman, K.K., Dilla-Ermita, C.J., Jaime, J.H., Steele, M.E., Hewavitharana, S.S., Holmes, G.J., Waterhouse, H., Dundore-Arias, J.P., Henry, P.M. 2024. Geospatial analysis of California strawberry fields reveals regional differences in crop rotation patterns and the potential for lengthened rotations at current levels of production. Frontiers in Sustainable Food Systems. 8. Article 1341782. https://doi.org/10.3389/fsufs.2024.1341782.
- Management of soilborne diseases in organic strawberry production-(Book / Chapter)
- Effect of abiotic stresses on Macrophomina root rot development in California Strawberry-(Abstract Only)
Gutierrez, M.J., Henry, P.M., Daugovish, O., Biscaro, A.S., Blauer, K.A., Hewavitharana, S.S., Holmes, G.J. 2024. Effect of abiotic stresses on Macrophomina root rot development in California strawberry. American Phytopathological Society Annual Meeting, July 27-30, 2024, Memphis, Tennessee.
- Some strains of the blackberry Fusarium wilt pathogen and the strawberry wilt-fragariae pathotype are clonally related-(Abstract Only)
Ho, T., Henry, P.M., Buhler, J. 2024. Some strains of the blackberry Fusarium wilt pathogen and the strawberry wilt-fragariae pathotype are clonally related. American Phytopathological Society Annual Meeting, July 27-30, 2024, Memphis, Tennessee.
- Revisiting Fusarium oxysporum epidemiology: Airborne dispersal of spores may be more common than typically thought-(Abstract Only)
Sacher, G., Crandall, S., LeBlanc, N.R., Henry, P.M. 2024. Revisiting Fusarium oxysporum epidemiology: Airborne dispersal of spores may be more common than typically thought. American Phytopathological Society Annual Meeting, July 27-30, 2024, Memphis, Tennessee.
- Genetic resistance to novel resistance-breaking strain of pathogenic fusarium wilt in cultivated strawberry-(Abstract Only)
Morgan, C., Bjornson, M., Dilla-Ermita, C., Henry, P.M., Pincot, D., Famula, R.A., Vachev, M., Jimenez, N., Knapp, S., Feldmann, M. 2024. Genetic resistance to novel resistance-breaking strain of pathogenic fusarium wilt in cultivated strawberry. American Phytopathological Society Annual Meeting. July 27-30, 2024, Memphis, Tennessee.
- Secreted in xylem 6 (SIX6) mediates Fusarium oxysporum f.sp. fragariae race 1 avirulence on FW1-resistant strawberry cultivars -(Peer Reviewed Journal)
Dilla-Ermita, C.J., Goldman, P.H., Anchieta, A.G., Feldmann, M.J., Pincot, D.D., Famula, R.A., Vachev, M., Cole, G.S., Knapp, S.J., Klosterman, S.J., Henry, P.M. 2024. Secreted in xylem 6 (SIX6) mediates Fusarium oxysporum f. sp. fragariae race 1 avirulence on FW1-resistant strawberry cultivars. Molecular Plant-Microbe Interactions. 37(6):530-541. https://doi.org/10.1094/MPMI-02-24-0012-R.
- Revisiting Fusarium oxysporum Epidemiology: A review of current knowledge and recent advances in airborne dispersal of spores-(Abstract Only)
Sacher, G., Dilla-Ermita, J., Crandall, S., LeBlanc, N.R., Henry, P.M. 2024. Revisiting Fusarium oxysporum Epidemiology: A review of current knowledge and recent advances in airborne dispersal of spores. American Phytopathological Society - Pacific Division Annual Meeting, March 26-28, 2024, Corvallis, Oregon.
- Disease-stage specific expression of carbohydrate active enzyme and effector genes during Macrophomina phaseolina infection of strawberry roots-(Abstract Only)
Dilla-Ermita, J., Pennerman, K., Gutierrez, O., Jimenez, Z.D., Ramos, G., Infante, S., Goldman, P.H., Henry, P.M. 2024. Disease-stage specific expression of carbohydrate active enzyme and effector genes during Macrophomina phaseolina infection of strawberry roots. Conference on Soilborne Plant Pathogens, March 26-28, 2024, Corvallis, Oregon.
- Alternative carbon sources for anaerobic soil disinfestation in California strawberry-(Abstract Only)
Daugovish, O., Henry, P.M., Muramoto, J. 2024. Alternative carbon sources for anaerobic soil disinfestation in California strawberry. American Society for Horticultural Science Annual Conference, September 23-27, 2024, Honolulu, Hawaii.
- Transgressive segregation, hopeful monsters, and phenotypic selection drove rapid genetic gains and breakthroughs in predictive breeding for quantitative resistance to Macrophomina in strawberry -(Peer Reviewed Journal)
Knapp, S.J., Cole, G.S., Pincot, D.D., Dilla-Ermita, C.J., Bjornson, M., Famula, R.A., Gordon, T.R., Harshman, J.M., Henry, P.M., Feldmann, M.J. 2024. Transgressive segregation, hopeful monsters, and phenotypic selection drove rapid genetic gains and breakthroughs in predictive breeding for quantitative resistance to Macrophomina in strawberry. Horticulture Research. 11(2). Article uhad289. https://doi.org/10.1093/hr/uhad289.
- Macrophomina phaseolina clonal and recombinant genotypes specialize for virulence on strawberry and soybean-(Abstract Only)
Pennerman, K.K., Goldman, P.H., Dilla-Ermita, J., Ramos, G., Aviles, M., Borrero, C., Gomez, A., Neal, J., Chilvers, M., Ortizlondono, V., Stukenbrock, E.H., Goldman, G.H., Mengistu, A., Seijo, T., Perez, N., Broome, J., Ivors, K., Cole, G., Knapp, S., Mcfarlane, D., Mattner, S., Gambardella, M., Henry, P.M. 2024. Macrophomina phaseolina clonal and recombinant genotypes specialize for virulence on strawberry and soybean. Fungal Genetics Conference, March 12-17, 2024, Pacific Grove, California.
- Developing suppressive crop rotation strategies for strawberries-(Abstract Only)
Muramoto, J., Henry, P.M., Goldman, P.H., Qin, C., Zavatta, M., Bolda, M., Daugovish, O., Greer, C., Perez, J., Wong, D., Goodhue, R., Shennan, C. 2023. Developing suppressive crop rotation strategies for strawberries. Methyl Bromide Alternatives Organization (MBAO) Conference, November 14-16, 2023, San Diego, California.
- Soil pest control in strawberry with strategic steam placement-(Abstract Only)
Fennimore, S.F., Rachuy, J.S., Henry, P.M., Daugovish, O., Ivors, K., Ching'Anda, C. 2023. Soil pest control in strawberry with strategic steam placement. Methyl Bromide Alternatives Organization (MBAO) Conference, November 14-16, 2023, San Diego, California.
- Exaggerated plurivory of Macrophomina phaseolina: Accounting for the large host range claim and the shifting of scientific language -(Peer Reviewed Journal)
Pennerman, K.K., Dilla-Ermita, C.J., Henry, P.M. 2024. Exaggerated plurivory of Macrophomina phaseolina: Accounting for the large host range claim and the shifting of scientific language. Phytopathology. 114(1):119-125. https://doi.org/10.1094/PHYTO-05-23-0154-R.
- Carbon sources for anaerobic soil disinfestation in southern California strawberry -(Peer Reviewed Journal)
Daugovish, O., Valdes-Berriz, M., Muramoto, J., Shennan, C., Zavatta, M., Henry, P.M. 2023. Carbon sources for anaerobic soil disinfestation in southern California strawberry. Agronomy. 13(6). Article 1635. https://doi.org/10.3390/agronomy13061635.
- Progress and challenges in identifying resistance to soybean charcoal rot-(Abstract Only)
- Planting-hole steam application for pathogen and weed control in organic strawberry in Southern California-(Abstract Only)
Daugovish, O., Fennimore, S., Broome, J., Oddbjorn, B., Ivors, K., Henry, P.M. 2023. Planting-hole steam application for pathogen and weed control in organic strawberry in Southern California. International Symposium on Soil and Substrate Disinfestation, June 6-8, 2023, Almeria, Spain.
- Alternative carbon sources for anaerobic soil disinfestation in California strawberry-(Abstract Only)
Daugovish, O., Muramoto, J., Zavatta, M., Valdez-Berriz, M., Henry, P.M. 2023. Alternative carbon sources for anaerobic soil disinfestation in California strawberry. International Symposium on Soil and Substrate Disinfestation, June 6-8, 2023, Almeria, Spain.
- First report of Fusarium oxysporum f. sp. fragariae race 2 causing Fusarium wilt of strawberry (Fragaria × ananassa) in California -(Peer Reviewed Journal)
Dilla-Ermita, C.J., Goldman, P.H., Jaime, J., Ramos, G., Pennerman, K., Henry, P.M. 2023. First report of Fusarium oxysporum f. sp. fragariae race 2 causing Fusarium wilt of strawberry (Fragaria × ananassa) in California. Plant Disease. 107(9):2849. https://doi.org/10.1094/PDIS-02-23-0217-PDN.
- Revisiting the host range of Macrophomina phaseolina-(Abstract Only)
Pennerman, K., Dilla-Ermita, J., Henry, P.M. 2023. Revisiting the host range of Macrophomina phaseolina. American Phytopathological Society Annual Meeting, August 12-16, 2023, Denver, Colorado.
- Comparative genomics and literature review of Macrophomina phaseolina indicate that a re-interpretation of host range is necessary-(Abstract Only)
Pennerman, K., Dilla-Ermita, J., Henry, P.M. 2023. Comparative genomics and literature review of Macrophomina phaseolina indicate that a re-interpretation of host range is necessary. American Phytopathological Society Annual Meeting, August 14, 2023, Denver, Colorado.
- Natural and Substrate-induced Microbial Succession and its Impact on Verticillium Wilt-(Abstract Only)
Mandal, M.K., Puri, K.D., Suren, H., Henry, P.M., Inderbitzin, P., Chellemi, D.O., Subbarao, K.V. 2023. Natural and substrate-induced microbial succession and its impact on Verticillium wilt. American Phytopathological Society Annual Meeting, August 12-16, 2023, Denver, Colorado.
- Go in for the kill: the influence of temperature on necrotrophic growth of Macrophomina phaseolina on strawberry-(Abstract Only)
Dilla-Ermita, J., Pennerman, K., Gutierrez, O.R., Jimenez, Z.D., Ramos, G., Infante, S., Goldman, P.H., Henry, P.M. 2023. Go in for the kill: The influence of temperature on necrotrophic growth of Macrophomina phaseolina on strawberry. American Phytopathological Society Annual Meeting, August 12-16, 2023, Denver, Colorado.
- Fusarium oxysporum f. sp. fragariae race 2 in California did not evolve through a single mutation in the AvrFW1 avirulence gene-(Abstract Only)
Henry, P.M., Dilla-Ermita, C., Pennerman, K.K. 2023. Fusarium oxysporum f. sp. fragariae race 2 in California did not evolve through a single mutation in the AvrFW1 avirulence gene. International Congress of Plant Pathology, August 20-25, 2023, Lyon, France.
- A broad genomic survey of Macrophomina spp. reveals host-genotype associations and evidence of on-going recombination-(Abstract Only)
Pennerman, K.K., Goldman, P.H., Dilla-Ermita, J., Ramos, G., Aviles, M., Borrero, C., Gomez, A., Neal, J., Chilvers, M., Ortizlondono, V., Stukenbrock, E.H., Goldman, G.H., Mengistu, A., Seijo, T., Perez, N., Broome, J., Ivors, K., Cole, G., Knapp, S., Mcfarlane, D., Mattner, S., Gambardella, M., Henry, P.M. 2023. A broad genomic survey of Macrophomina spp. reveals host-genotype associations and evidence of on-going recombination. International Congress of Plant Pathology, August 20-25, 2023, Lyon, France.
- Historic misunderstandings about the host range of Macrophomina phaseolina-(Abstract Only)
Pennerman, K., Dilla-Ermita, J., Henry, P.M. 2023. Historic misunderstandings about the host range of Macrophomina phaseolina. Conference on Soilborne Plant Pathogens, March 28-30, 2023, Salinas, California.
- Steam treatments for control of Macrophomina crown rot in summer-planted strawberry-(Abstract Only)
Jaime, J., Daugovish, O., Rachuy, J., Ivors, K., Warres, B., Henry, P.M., Broome, J., Bergem, O., Fennimore, S. 2023. Steam treatments for control of Macrophomina crown rot in summer-planted strawberry. Conference on Soilborne Plant Pathogens, March 28-30, 2023, Salinas, California.
- Geospatial analysis of California strawberry fields reveals regional differences in crop rotation and vulnerability to a warming climate-(Abstract Only)
Ramos, G., Goldman, P.H., Sharrett, J., Pennerman, K., Dilla-Ermita, J., Dundore-Arias, J.P., Henry, P.M. 2023. Geospatial analysis of California strawberry fields reveals regional differences in crop rotation and vulnerability to a warming climate. Conference on Soilborne Plant Pathogens, March 28-30, 2023, Salinas, California.
- Effect of wheat cover crop on Macrophomina root rot and rhizosphere microbiome in strawberry-(Abstract Only)
Steele, M., Holmes, G., Henry, P.M., Hewavitharana, S. 2023. Effect of wheat cover crop on Macrophomina root rot and rhizosphere microbiome in strawberry. American Phytopathological Society - Pacific Division Annual Meeting, March 14-16, 2023, Tucson, Arizona.
- Sporodochia formed by Fusarium oxysporum f. sp. fragariae produce airborne conidia and are ubiquitous on diseased strawberry plants in California -(Peer Reviewed Journal)
Henry, P.M., Dilla-Ermita, C.J., Goldman, P.H., Jaime, J., Ramos, G. 2023. Sporodochia formed by Fusarium oxysporum f. sp. fragariae produce airborne conidia and are ubiquitous on diseased strawberry plants in California. Phytopathology. 113(8):1399-1404. https://doi.org/10.1094/PHYTO-10-22-0375-SC.
- Genomic Diversity in Fusarium oxysporum f. sp. fragariae; Implications for effective development of host resistance-(Abstract Only)
Henry, P.M. 2023. Genomic diversity in Fusarium oxysporum f. sp. fragariae; Implications for effective development of host resistance. North American Strawberry Growers Association Annual Meeting, March 7-10, 2023, San Luis Obispo, California.
- Sporodochia formed by Fusarium oxysporum f. sp. fragariae: occurrence and implications-(Abstract Only)
Dilla-Ermita, C.J., Henry, P.M. 2023. Sporodochia formed by Fusarium oxysporum f. sp. fragariae: Occurrence and implications. North American Strawberry Growers Association Annual Meeting, March 7-10, 2023, San Luis Obispo, California.
- Updates on Fusarium wilt research: aerial dispersal and resistance-breaking strains-(Abstract Only)
Henry, P.M. 2023. Updates on Fusarium wilt research: Aerial dispersal and resistance-breaking strains. University of California Cooperative Extension Annual Strawberry Production Research Meeting, February 7, 2023 (virtual).
- FW1-resistant varieties with Fusarium wilt in Oxnard, CA-(Popular Publication)
Henry, P.M. 2023. FW1-resistant varieties with Fusarium wilt in Oxnard, CA. Cal Poly Strawberry Center Blog. Available: https://strawberrycenterblog.com/2023/01/18/fw1-resistant-varieties-with-fusarium-wilt-in-oxnard-ca/.
- Survey of late-season soilborne pathogens infecting strawberry in Watsonville-Salinas, California -(Peer Reviewed Journal)
Steele, M.E., Hewavitharana, S.S., Henry, P.M., Goldman, P.H., Holmes, G.J. 2023. Survey of late-season soilborne pathogens infecting strawberry in Watsonville-Salinas, California. Plant Health Progress. 24(1):104-109. https://doi.org/10.1094/PHP-06-22-0056-S.
- First report of watermelon mosaic virus naturally infecting coriander (Coriandrum sativum) and causing a leaf mottling disease in California -(Peer Reviewed Journal)
Cespedes, M.K., Melgarejo, T.A., Henry, P.M., Rwahnih, M.A., Gilbertson, R.L. 2022. First report of watermelon mosaic virus naturally infecting coriander (Coriandrum sativum) and causing a leaf mottling disease in California. Plant Disease. 107(4):1248. https://doi.org/10.1094/PDIS-05-22-1184-PDN.
- Pathotypes of Fusarium oxysporum f. sp. fragariae express discrete repertoires of accessory genes and induce distinct host transcriptional responses during root infection -(Peer Reviewed Journal)
Jenner, B.N., Henry, P.M. 2022. Pathotypes of Fusarium oxysporum f. sp. fragariae express discrete repertoires of accessory genes and induce distinct host transcriptional responses during root infection. Environmental Microbiology. 24(10):4570-4586. http://doi.org/10.1111/1462-2920.16101.
- The emergence of Fusarium oxysporum f. sp. apii race 4 and Fusarium oxysporum f. sp. coriandrii highlight major obstacles facing agricultural production in coastal California in a warming climate: A case study -(Peer Reviewed Journal)
Epstein, L.E., Kaur, S., Henry, P.M. 2022. The emergence of Fusarium oxysporum f. sp. apii race 4 and Fusarium oxysporum f. sp. coriandrii highlight major obstacles facing agricultural production in coastal California in a warming climate: A case study. Frontiers in Plant Science. 13. Article 921516. https://doi.org/10.3389/fpls.2022.921516.
- Novel Fusarium wilt resistance genes uncovered in natural and cultivated strawberry populations are found on three non-homoeologous chromosomes -(Peer Reviewed Journal)
Pincot, D.D., Feldmann, M.J., Hardigan, M.A., Vachev, M.V., Henry, P.M., Gordon, T.R., Bjornson, M., Rodriguez, A., Cobo, N., Famula, R.A., Cole, G.S., Coaker, G.L., Knapp, S.J. 2022. Novel Fusarium wilt resistance genes uncovered in natural and cultivated strawberry populations are found on three non-homoeologous chromosomes. Theoretical and Applied Genetics. 135:2121-2145. https://doi.org/10.1007/s00122-022-04102-2.
- Novel Fusarium wilt resistance genes uncovered in natural and cultivated strawberry populations are found on three non-homoeologous chromosomes -(Peer Reviewed Journal)
Pincot, D.D., Feldmann, M.J., Hardigan, M.A., Vachev, M.V., Henry, P.M., Gordon, T.R., Bjornson, M., Rodriguez, A., Cobo, N., Famula, R., Cole, G.S., Coaker, G.L., Knapp, S.J. 2022. Novel Fusarium wilt resistance genes uncovered in natural and cultivated strawberry populations are found on three non-homoeologous chromosomes. Theoretical and Applied Genetics. 135:2121-2145. https://doi.org/10.1007/s00122-022-04102-2.
- Site-specific soil pest management in strawberry & vegetable cropping systems-(Abstract Only)
Martin, F.N., Fennimore, S., Matson, M.E., Racano, D., Melton, F., Hang, M., Vougioukas, S., Arikapudi, R., Dorn, N., Putman, A., Earles, M., Magney, T., Goodhue, R., Henry, P.M., Greer, C., Daugovish, O., Miscaro, A., Stanghellini, M. 2022. Site-specific soil pest management in strawberry & vegetable cropping systems. American Phytopathological Society Annual Meeting (Plant Health 2022), August 6-10, 2022, Pittsburgh, Pennsylvania.
- What do we know about the lifecycle of Macrophomina phaseolina?-(Abstract Only)
Henry, P.M. 2022. What do we know about the lifecycle of Macrophomina phaseolina? Conference on Soilborne Plant Pathogens, March 24, 2022 (virtual).
- Pathotypes of Fusarium oxysporum f. sp. fragariae express discrete repertoires of accessory genes and induce distinct host transcriptional responses during root infection-(Abstract Only)
Jenner, B.N., Henry, P.M. 2022. Pathotypes of Fusarium oxysporum f. sp. fragariae express discrete repertoires of accessory genes and induce distinct host transcriptional responses during root infection. Fungal Genetics Conference, March 15-19, 2022, Pacific Grove, California.
- Options for breaking the lifecycle of Macrophomina phaseolina-(Abstract Only)
Henry, P.M. 2022. Options for breaking the lifecycle of Macrophomina phaseolina. Driscoll's Global Plant Health Meeting: Disease and Pest Management in Berry Fruit Production, March 16, 2022 (virtual).
- Secreted in xylem (SIX) 6 mediates Fusarium oxysporum f. sp. fragariae race 1 avirulence to strawberry cultivars with FW1 resistance-(Abstract Only)
Dilla-Ermita, C., Goldman, P.H., Anchieta, A.G., Pincot, D.D., Famula, R.A., Cole, G.S., Knapp, S.J., Klosterman, S.J., Henry, P.M. 2022. Secreted in xylem (SIX) 6 mediates Fusarium oxysporum f. sp. fragariae race 1 avirulence to strawberry cultivars with FW1 resistance. Fungal Genetics Conference, March 15-19, 2022, Pacific Grove, California.
- Managing losses to Fusarium wilt disease with resistant varieties-(Other)
Henry, P.M. 2022. Managing losses to Fusarium wilt disease with resistant varieties. Management of Fusarium wilt and Other Soilborne Fungal Diseases for Organic Growers Meeting, February 15, 2022 (virtual).
- Amplicon sequencing of Fusarium translation elongation factor 1a reveals that soil communities of Fusarium species are resilient to
disturbances caused by crop and tillage practices -(Peer Reviewed Journal)
Henry, P.M., Koehler, S., Kaur, S., Epstein, L., Mitchell, J.P., Gordon, T.R., Leveau, J.H. 2022. Amplicon sequencing of Fusarium translation elongation factor 1a reveals that soil communities of Fusarium species are resilient to disturbances caused by crop and tillage practices. Phytobiomes Journal. 6(3):261-274. https://doi.org/10.1094/PBIOMES-09-21-0053-R.
- Integrated pest management with fumigation to control Fusarium wilt and Macrophomina-(Abstract Only)
Henry, P.M. 2022. Integrated pest management with fumigation to control Fusarium wilt and Macrophomina. Annual Strawberry Production Research Meeting, February 2, 2022 (virtual).
- Composition of the microbiomes from spinach seeds infested or noninfested with Peronospora effusa or Verticillium dahliae -(Peer Reviewed Journal)
Kandel, S.L., Henry, P.M., Goldman, P.H., Mou, B., Klosterman, S.J. 2022. Composition of the microbiomes from spinach seeds infested or noninfested with Peronospora effusa or Verticillium dahliae. Phytobiomes Journal. 6(2):169-180. https://doi.org/10.1094/PBIOMES-05-21-0034-R.
- Bulk soil communities of Fusarium spp. are resilient to changes induced by crop and tillage practices-(Abstract Only)
Henry, P.M., Koehler, S., Epstein, L., Gordon, T.R., Leveau, J.H. 2021. Bulk soil communities of Fusarium spp. are resilient to changes induced by crop and tillage practices. American Phytopathological Society Annual Meeting, August 2-6, 2021 (virtual).
- Spontaneous changes in somatic compatibility in Fusarium circinatum -(Peer Reviewed Journal)
Gordon, T.R., Henry, P.M., Jenner, B.N., Scott, J.C. 2021. Spontaneous changes in somatic compatibility in Fusarium circinatum. Fungal Biology. 12(9):725-732. https://doi.org/10.1016/j.funbio.2021.04.008.
- Molecular quantification of Fusarium oxysporum f. sp. fragariae in soil-(Abstract Only)
Matson, M.E., Crouch, U.T., Martin, L.R., Jacquez, M.A., Zepeda, S., Dorn, J.R., Goldman, P.H., Henry, P.M., Martin, F.N. 2021. Molecular quantification of Fusarium oxysporum f. sp. fragariae in soil. American Phytopathological Society Annual Meeting, August 2-6, 2021 (virtual).
- Site-specific soil pest management in strawberry & vegetable cropping systems-(Abstract Only)
Martin, F.N., Fennimore, S., Matson, M.E., Racano, D., Putman, A., Melton, F., Hang, M., Magney, T., Earles, M., Goodhue, R., Vougioukas, S., Dorn, N., Henry, P.M., Greer, C., Daugovish, O., Biscaro, A., Stanghellini, M. 2021. Site-specific soil pest management in strawberry & vegetable cropping systems. American Phytopathological Society Annual Meeting, August 2-6, 2021 (virtual).
- No-tillage sorghum yields match, and garbanzo yields match or exceed standard tillage: A case for no-tillage in California -(Peer Reviewed Journal)
Mitchell, J.P., Shrestha, A., Epstein, L., Dahlberg, J.A., Ghezzehei, T., Araya, S., Richter, B., Kaur, S., Henry, P.M., Munk, D.S., Light, S., Bottens, M., Zaccaria, D. 2022. No-tillage sorghum yields match, and garbanzo yields match or exceed standard tillage: A case for no-tillage in California. California Agriculture. 75(3):112-120. https://doi.org/10.3733/ca.2021a0017.
- Best practices for reducing risk of soilborne disease through cover cropping-(Other)
Henry, P.M. 2021. Best practices for reducing risk of soilborne disease through cover cropping. Annual Strawberry Production Research Meeting, January 15, 2021 (virtual).
- Horizontal chromosome transfer and independent evolution drive diversification in Fusarium oxysporum f. sp. fragariae -(Peer Reviewed Journal)
Henry, P.M., Pincot, D.D.A, Jenner, B.N., Borrero, C., Aviles, M., Nam, M., Epstein, L., Knapp, S.J., Gordon, T.R. 2021. Horizontal chromosome transfer and independent evolution drive diversification in Fusarium oxysporum f. sp. fragariae. New Phytologist. 230(1):327-340. https://doi.org/10.1111/nph.17141.
- Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii -(Peer Reviewed Journal)
Henry, P.M., Kaur, S., Pham, Q.A.T., Barakat, R., Brinker, S., Haensel, H., Daugovish, O., Epstein, L. 2020. Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii. BMC Genomics. 21. https://doi.org/10.1186/s12864-020-07141-5.
- Quantification of Fusarium oxysporum disease potential from soil DNA-(Proceedings)
Matson, M.E., Crouch, U., Kane, S.M., Henry, P.M., Goldman, P.H., Martin, F.N. 2020. Quantification of Fusarium oxysporum disease potential from soil DNA. Methyl Bromide Alternatives Outreach (MBAO) Conference, November 3-5, 2020 (virtual).
- Site-specific soil pest management in strawberry & vegetable cropping systems-(Proceedings)
Martin, F.N., Fennimore, S., Putman, A., Matson, M.E., Racano, D., Melton, F., Goodhue, R., Henry, P.M., Vougioukas, S., Dorn, N., Greer, C., Daugovish, O., Biscaro, A., Stanghellini, M. 2020. Site-specific soil pest management in strawberry & vegetable cropping systems. Methyl Bromide Alternatives Outreach (MBAO) Conference, November 3-5, 2020 (virtual). Available: https://www.mbao.org/static/docs/confs/2020-online/papers/6_martin_et_al_mbao_10_30_20.pdf.
- Accuracy of genomic selection and long-term genetic gain for resistance to Verticillium wilt in strawberry -(Peer Reviewed Journal)
Pincot, D.D., Hardigan, M.A., Cole, G.S., Famula, R.A., Henry, P.M., Gordon, T.R., Knapp, S.J. 2020. Accuracy of genomic selection and long-term genetic gain for resistance to Verticillium wilt in strawberry. The Plant Genome. 13(3). Article e20054. https://doi.org/10.1002/tpg2.20054.
- The potential for Fusarium oxysporum f. sp. fragariae, cause of Fusarium wilt of strawberry, to colonize organic matter in soil and persist through anaerobic soil disinfestation -(Peer Reviewed Journal)
Henry, P.M., Haugland, M., Lopez, L., Munji, M., Watson, D.C., Gordon, T.R. 2020. The potential for Fusarium oxysporum f. sp. fragariae, cause of Fusarium wilt of strawberry, to colonize organic matter in soil and persist through anaerobic soil disinfestation. Plant Pathology. https://doi.org/10.1111/ppa.13225.
- New techniques exploring relationships between pathogen pressure and disease progression in strawberry-(Abstract Only)
Matson, M.E., Hang, M., Pastrana Leon, A.M., Crouch, U., Goldman, P.H., Henry, P.M., Melton, F., Martin, F.N. 2020. New techniques exploring relationships between pathogen pressure and disease progression in strawberry. American Phytopathological Society Annual Meeting, August 10-14, 2020 (virtual).
- Systems-based management for soilborne diseases of strawberry-(Other)
Henry, P.M., Bolda, M.P., Ramos, M. 2020. Systems-based management for soilborne diseases of strawberry. Annual Strawberry Production Research Meeting, February 5, 2020, Watsonville, California.
- Mining genetic diversity in a global population of elite and exotic germplasm to identify novel race-specific Fusarium wilt resistance genes in strawberry-(Abstract Only)
Pincot, D.D., Rodrigues, A., Cobo, N., Henry, P.M., Hardigan, M.A., Lorant, A., Ledda, M., Famula, R.A., Gordon, T.R., Cole, G.S., Knapp, S.J. 2019. Mining genetic diversity in a global population of elite and exotic germplasm to identify novel race-specific Fusarium wilt resistance genes in strawberry. Rosaceae Genomics Conference, March 31-April 3, 2020, Barcelona, Spain.
- Mining genetic diversity in a global population of elite and exotic germplasm to identify novel race-specific Fusarium wilt resistance genes in strawberry-(Abstract Only)
Pincot, D.D., Rodgrigues, A., Cobo, N., Henry, P.M., Hardigan, M.A., Lorant, A., Ledda, M., Famula, R.A., Gordon, T.R., Cole, G.S., Knapp, S.J. 2019. Mining genetic diversity in a global population of elite and exotic germplasm to identify novel race-specific Fusarium wilt resistance genes in strawberry. International Strawberry Symposium, May 2-6, 2020, Rimini, Italy.
- The survival of Fusarium oxysporum f. sp. fragariae through soil fumigation-(Other)
Henry, P.M., Bolda, M., Ramos, M., Gordon, T.R. 2019. The survival of Fusarium oxysporum f. sp. fragariae through soil fumigation. Methyl Bromide Alternatives and Emissions Research Conference, November 11-12, 2019, San Diego, California.
- Transcriptional responses of strawberry to Fusarium oxysporum f. sp. fragariae-(Other)
Jenner, B.N., Gordon, T.R., Henry, P.M. 2019. Transcriptional responses of strawberry to Fusarium oxysporum f. sp. fragariae. Northern California Computational Biology Symposium, October 12, 2019, Davis, California.
- Site-specific soil pest management in strawberry and vegetable cropping systems-(Abstract Only)
Martin, F.N., Fennimore, S., Putman, A., Matson, M.E., Melton, F., Goodhue, R., Henry, P.M., Vougioukas, S., Dorn, N. 2019. Site-specific soil pest management in strawberry and vegetable cropping systems. Methyl Bromide Alternatives Outreach (MBAO) Conference, November 11-12, 2019, San Diego, California. Available: https://www.mbao.org/static/docs/confs/2019-sandiego/papers/24martin__frank_.pdf.