Devinder Sandhu
Research Geneticist (Plants)
Publications
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Genome-wide dissection and haplotype analysis identified superior haplotypes for improved salt stress tolerance in wheat (Triticum aestivum L.)
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(Abstract Only)
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An Introduction to Salinity and Sodicity.
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Westhoff, A, Clay DE, Osterloh K, Clay SA, DeSutter TH, Nleya T, Ferreira, JFS, Suarez DL, and Sandhu D. 2024. An introduction to salinity and sodicity. In: Clay, DE, DeSutter TM, Clay SA, and Nleya T, (eds) Salinity and Sodicity: A Global Challenge to Food Security, Environmental Quality, and Soil Resilience, First Edition. American Society of Agronomy, Inc. / Crop Science Society of America, Inc. / Soil Science Society of America, Inc. John Wiley & Sons, Inc., Hoboken, NJ, USA, pp 1-5. DOI: 10.1002/9780891183976.ch1
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Elucidating genetic determinants for salt tolerance in spring wheat (Triticum aestivum L.)
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(Abstract Only)
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Gudi, S., Gill, H.S., Collins, S., Singh, J., Sandhu, D., Sehgal, S., Upinder, G., Gupta, R. 2024. Elucidating genetic determinants for salt tolerance in spring wheat (Triticum aestivum L.). Meeting Abstract. Poster No. 20.
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Strategies for combating plant salinity stress: The potential of plant growth-promoting microorganisms
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(Peer Reviewed Journal)
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Acharya, B., Gill, S.P., Kaundal, A., Sandhu, D. 2024. Strategies for combating plant salinity stress: The potential of plant growth-promoting microorganisms. Frontiers in Plant Science. 15:1406913. https://doi.org/10.3389/fpls.2024.1406913.
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A targeted and an untargeted metabolomics approach to study the phytochemicals of tomato cultivars grown under different salinity conditions
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(Peer Reviewed Journal)
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Tareq, F.S., Singh, J., Ferreira, J.F., Sandhu, D., Suarez, D.L., Luthria, D.L. 2024. A targeted and an untargeted metabolomics approach to study the phytochemicals of tomato cultivars grown under different salinity conditions. Journal of Agricultural and Food Chemistry. 72(14):7694-7706. https://doi.org/10.1021/acs.jafc.3c08498.
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miR828a-CsMYB114 module negatively regulates the biosynthesis of theobromine in Camellia sinensis
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(Peer Reviewed Journal)
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Jin, Q., Zhong, W., Sandhu, D., Chen, L., Shao, C., Xie, S., Shang, F., Wen, S., Wu, T., Jin, H., Huang, F., Liu, G., Hu, J., Su, Q., Huang, M., Zhu, Q., Zhou, B., Zhu, L., Peng, L., Liu, Z., Huang, J., Tian, N., Liu, S. 2024. miR828a-CsMYB114 module negatively regulates the biosynthesis of theobromine in Camellia sinensis. Journal of Agricultural and Food Chemistry. 72(8):4464-4475. https://doi.org/10.1021/acs.jafc.3c07736.
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mRNA-miRNA analyses reveal the involvement of CsbHLH1 and miR1446a in the regulation of caffeine biosynthesis in Camellia sinensis
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(Peer Reviewed Journal)
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Jin, Q., Zhong, W., Sandhu, D., Chen, L., Shao, C., Shang, F., Xie, S., Huang, F., Chen, Z., Zhang, X., Hu, J., Liu, G., Su, Q., Huang, M., Liu, Z., Huang, J., Tian, N., Liu, S. 2024. mRNA-miRNA analyses reveal the involvement of CsbHLH1 and miR1446a in the regulation of caffeine biosynthesis in Camellia sinensis. Horticulture Research. 11(2). Article uhad282. https://doi.org/10.1093/hr/uhad282.
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Exploring the Arabidopsis RNA-binding proteome and its dynamics under salinity stress
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(Abstract Only)
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Evaluating new breeding material for salinity tolerance in almond rootstocks and exploring novel sources of salinity tolerance in Prunus germplasm
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Developing alfalfa with enhanced salinity tolerance in a changing climate
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Exploring the genetic landscape of salinity tolerance in spinach: Expression profiling and insights from salinity responses
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Salinity responses in 24 guar genotypes: Tolerance mechanism and it's multigenetic regulation
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Fields of the future: Pivotal role of Biosaline Agriculture in farming
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Gheyi, H.R., Sandhu, D., Lacerda, C.F. 2023. Fields of the future: Pivotal role of Biosaline Agriculture in farming. Agriculture. 13(9):1774. https://doi.org/10.3390/agriculture13091774.
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Salinity stress tolerance prediction for biomass-related traits in maize (Zea mays L.) using genome-wide markers
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(Peer Reviewed Journal)
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Singh, V., Kraus, M., Sandhu, D., Sekhon, R.S., Kaundal, A. 2023. Salinity stress tolerance prediction for biomass-related traits in maize (Zea mays L.) using genome-wide markers. The Plant Genome. 16(4). Article e20385. https://doi.org/10.1002/tpg2.20385.
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Divergent gene expression responses to salinity stress in 16 geographically diverse spinach genotypes
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(Peer Reviewed Journal)
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Sandhu, D., Pudussery, M.V., William, M., Kaundal, A., Ferreira, J.F. 2023. Divergent gene expression responses to salinity stress in 16 geographically diverse spinach genotypes. ACS Agricultural Science and Technology. 3(9):795-804. https://doi.org/10.1021/acsagscitech.3c00149.
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An advanced protocol for profiling RNA-binding proteins in Arabidopsis using plant phase extraction
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(Peer Reviewed Journal)
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Zhang, Y., Xu, Y., Skaggs, T.H., Ferreira, J.F., Chen, X., Sandhu, D. 2023. An advanced protocol for profiling RNA-binding proteins in Arabidopsis using plant phase extraction. Biology Methods and Protocols. 8(1). Article bpad016. https://doi.org/10.1093/biomethods/bpad016.
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Understanding the salt overly sensitive pathway in Prunus:
Identification and characterization of NHX, CIPK, and CBL genes.
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(Peer Reviewed Journal)
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Acharya, B., Zhao, C., Reyes, L., Ferreira, J.F., Sandhu, D. 2024. Understanding the salt overly sensitive pathway in Prunus: Identification and characterization of NHX, CIPK, and CBL genes.. The Plant Genome. 17(1): e20371. https://doi.org/10.1002/tpg2.20371.
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Plant phase extraction: A method for enhanced discovery of the RNA-binding proteome and its dynamics in plants
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(Peer Reviewed Journal)
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Zhang, Y., Xu, Y., Skaggs, T.H., Ferreira, J.F., Chen, X., Sandhu, D. 2023. Plant phase extraction: A method for enhanced discovery of the RNA-binding proteome and its dynamics in plants. The Plant Cell. 35(8):2750-2772. https://doi.org/10.1093/plcell/koad124.
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A critical look at plant response to salinity/sodicity and implication for global food security
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Ferreira, JFS, Suarez DL, and Sandhu D. 2024. Critical questions about the origins and plant responses to soil salinity and sodicity. In: Clay, DE, DeSutter TM, Clay SA, and Nleya T, (eds) Salinity and Sodicity: A Global Challenge to Food Security, Environmental Quality, and Soil Resilience, First Edition. American Society of Agronomy, Inc. / Crop Science Society of America, Inc. / Soil Science Society of America, Inc. John Wiley & Sons, Inc., Hoboken, NJ, USA, pp 143-155. DOI: 10.1002/9780891183976.ch16
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Evaluating new breeding material for salinity tolerance in almond rootstocks and exploring novel sources of salinity tolerance in Prunus
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Salinity-tolerance and its mechanism in diverse genotypes of guar
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NaCl accumulation, shoot biomass, antioxidant capacity, and gene expression of Passiflora edulis f. flavicarpa Deg. in response to irrigation waters of moderate to high salinity
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(Peer Reviewed Journal)
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Ferreira, J.F., Liu, X., Suddarth, S., Nguyen, C., Sandhu, D. 2022. NaCl accumulation, shoot biomass, antioxidant capacity, and gene expression of Passiflora edulis f. flavicarpa Deg. in response to irrigation waters of moderate to high salinity. Agriculture. 12(11). Article 1856. https://doi.org/10.3390/agriculture12111856.
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Salinity responses in 24 guar genotypes are linked to multigenic regulation explaining the complexity of tolerance mechanisms in planta
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(Peer Reviewed Journal)
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Sandhu, D., Pallete, A., William, M., Ferreira, J.F., Kaundal, A., Grover, K.K. 2023. Salinity responses in 24 guar genotypes are linked to multigenic regulation explaining the complexity of tolerance mechanisms in planta. Crop Science. 63(2):585-597. https://doi.org/10.1002/csc2.20872.
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Tools and approaches for the genetic improvement of salinity tolerance in alfalfa
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Comparative transcriptome analysis reveals key pathways and genes involved in trichome development in tea plant (Camellia sinensis)
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(Peer Reviewed Journal)
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Chen, L., Tian, N., Hu, M., Sandhu, D., Jin, Q., Gu, M., Zhang, X., Peng, Y., Zhang, J., Chen, Z., Liu, G., Huang, M., Huang, J., Liu, Z., Liu, S. 2022. Comparative transcriptome analysis reveals key pathways and genes involved in trichome development in tea plant (Camellia sinensis). Frontiers in Plant Science. 13. Article 997778. https://doi.org/10.3389/fpls.2022.997778.
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Comparative transcriptome analysis of Agrobacterium tumefaciens reveals the molecular basis for the recalcitrant genetic transformation of Camellia sinensis L
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(Peer Reviewed Journal)
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Jin, K., Tian, N., Ferreira, J.F.S., Sandhu, D., Xiao, L., Gu, M., Luo, Y., Zhang, X., Liu, G., Liu, Z., Huang, J., Liu, S. 2022. Comparative transcriptome analysis of Agrobacterium tumefaciens reveals the molecular basis for the recalcitrant genetic transformation of Camellia sinensis L. Biomolecules. 12(5). Article 688. https://doi.org/10.3390/biom12050688.
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Transgenic expression of Prunus persica Salt Overly Sensitive 2 (PpSOS2) in atsos2 mutant imparts salt tolerance in Arabidopsis
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(Peer Reviewed Journal)
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Kaundal, A., Sandhu, D., Singh, V., Duenas, M., Acharya, B.R., Nelson, B., Ferreira, J.F.S., Litt, A. 2022. Transgenic expression of Prunus persica Salt Overly Sensitive 2 (PpSOS2) in atsos2 mutant imparts salt tolerance in Arabidopsis. ACS Agricultural Science and Technology. 2(1):153-164. https://doi.org/10.1021/acsagscitech.1c00276.
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Deciphering molecular mechanisms involved in salinity tolerance in guar (Cyamopsis tetragonoloba (L.) Taub.) using transcriptome analyses
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(Peer Reviewed Journal)
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Acharya, B.R., Sandhu, D., Dueñas, C., Ferreira, J.F., Grover, K.K. 2022. Deciphering molecular mechanisms involved in salinity tolerance in guar (Cyamopsis tetragonoloba (L.) Taub.) using transcriptome analyses. Plants. 11(3). Article 291. https://doi.org/10.3390/plants11030291.
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Morphological, physiological, biochemical, and transcriptome studies reveal the importance of transporters and stress signaling pathways during salinity stress in Prunus
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(Peer Reviewed Journal)
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Acharya, B.R., Sandhu, D., Dueñas, C., Dueñas, M., Pudussery, M.V., Kaundal, A., Ferreira, J.F., Suarez, D.L., Skaggs, T.H. 2022. Morphological, physiological, biochemical, and transcriptome studies reveal the importance of transporters and stress signaling pathways during salinity stress in Prunus. Scientific Reports. 12. Article 1274. https://doi.org/10.1038/s41598-022-05202-1.
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Linking genetic determinants with salinity tolerance and ion relationships in eggplant, tomato and pepper
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(Peer Reviewed Journal)
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Suarez, D.L., Celis, N., Ferreira, J.F.S., Reynolds, T., Sandhu, D. 2021. Linking genetic determinants with salinity tolerance and ion relationships in eggplant, tomato and pepper. Scientific Reports. 11. Article 16298. https://doi.org/10.1038/s41598-021-95506-5.
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Physiological, morphological, biochemical, and genetic responses of alfalfa to salinity
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Acharya, B., Sandhu, D., Ferreira, J.F.S. 2021. Physiological, morphological, biochemical, and genetic responses of alfalfa to salinity. In: Yu, L.X., Kole, C., editors. The Alfalfa Genome. Switzerland: Springer Nature Switzerland AG. p. 145-157. https://doi.org/10.1007/978-3-030-74466-3_9.
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Contrasting responses of guar genotypes shed light on multiple component traits of salinity tolerance mechanisms
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Sandhu, D., Pallete, A., Pudussery, M.V., Grover, K.K. 2021. Contrasting responses of guar genotypes shed light on multiple component traits of salinity tolerance mechanisms. Agronomy. 11(6). Article 1068. https://doi.org/10.3390/agronomy11061068.
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Transcriptional profiling of two contrasting genotypes uncovers molecular mechanisms underlying salt tolerance in alfalfa
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(Peer Reviewed Journal)
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Kaundal, R., Duhan, N., Acharya, B.R., Pudussery, M.V., Ferreira, J.F., Suarez, D.L., Sandhu, D. 2021. Transcriptional profiling of two contrasting genotypes uncovers molecular mechanisms underlying salt tolerance in alfalfa. Scientific Reports. 11. Article 5210. https://doi.org/10.1038/s41598-021-84461-w.
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Transcript analysis of two spinach cultivars reveals the complexity of salt tolerance mechanisms
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Zhao, C., Sandhu, D., Ferreira, J.F. 2021. Transcript analysis of two spinach cultivars reveals the complexity of salt tolerance mechanisms. ACS Agricultural Science and Technology. 1(2):64-75. https://doi.org/10.1021/acsagscitech.0c00063.
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Influence of moderate-to-high salinity on the phytochemical profile of two salinity-tolerant spinach genotypes
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(Peer Reviewed Journal)
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Tareq, F.S., Kotha, R.R., Ferreira, J.F., Sandhu, D., Luthria, D.L. 2021. Influence of moderate-to-high salinity on the phytochemical profile of two salinity-tolerant spinach genotypes. ACS Food Science and Technology. 1 205–214. https://doi.org/10.1021/acsfoodscitech.0c00034.
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Germination and growth of spinach under potassium deficiency and irrigation with high-salinity water
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(Peer Reviewed Journal)
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Uçgun, K., Ferreira, J.F.S., Liu, X., Filho, J.B., Suarez, D.L., Lacerda, C.F., Sandhu, D. 2020. Germination and growth of spinach under potassium deficiency and irrigation with high-salinity water. Plants. 9(12). Article 1739. https://doi.org/10.3390/plants9121739.
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Linking diverse salinity responses of 14 almond rootstocks with physiological, biochemical, and genetic determinants
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(Peer Reviewed Journal)
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Sandhu, D., Kaundal, A., Acharya, B.R., Forest, T., Pudussery, M.V., Liu, X., Ferreira, J.F.S., Suarez, D.L. 2020. Linking diverse salinity responses of 14 almond rootstocks with physiological, biochemical, and genetic determinants. Scientific Reports. 10. Article 21087. https://doi.org/10.1038/s41598-020-78036-4.
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Genetic dissection of the salt tolerance mechanisms in almond rootstocks
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Isolation and characterization of salt overly sensitive family genes in spinach
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(Peer Reviewed Journal)
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Zhao, C., William, D., Sandhu, D. 2021. Isolation and characterization of Salt Overly Sensitive family genes in spinach. Physiologia Plantarum. 171(4):520-532. https://doi.org/10.1111/ppl.13125.
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Spinach plants favor the absorption of K+ over Na+ regardless of
salinity, and may benefit from Na+ when K+ is deficient in the soil
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(Peer Reviewed Journal)
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Ferreira, J.F., Filho, J.B., Liu, X., Sandhu, D. 2020. Spinach plants favor the absorption of K+ over Na+ regardless of salinity, and may benefit from Na+ when K+ is deficient in the soil. Plants. 9(4). https://doi.org/10.3390/plants9040507.
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Mutation in a PHD-finger protein MS4 causes male sterility in soybean
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Thu, S.W., Rai, K.M., Sandhu, D., Rajangam, A., Balasubramanian, V.K., Palmer, R.G., Mendu, V. 2019. Mutation in a PHD-finger protein MS4 causes male sterility in soybean. Biomed Central (BMC) Plant Biology. 19. https://doi.org/10.1186/s12870-019-1979-4.
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Mechanistic insight into the salt tolerance of almonds
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Sandhu, D., Acharya, B. 2019. Mechanistic insight into the salt tolerance of almonds. Progressive Crop Consultant. 4(5):44-49.
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Characterization of natural genetic variation identifies multiple genes involved in salt tolerance in maize
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(Peer Reviewed Journal)
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Sandhu, D., Pudussery, M.V., Kumar, R., Pallete, A., Markley, P., Bridges, W.C., Sekhon, R.S. 2020. Characterization of natural genetic variation identifies multiple genes involved in salt tolerance in maize. Functional and Integrative Genomics. 20:261-275. https://doi.org/10.1007/s10142-019-00707-x.
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Grape rootstock response to salinity, water and combined salinity and water stress
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(Peer Reviewed Journal)
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Suarez, D.L., Celis, N., Anderson, R.G., Sandhu, D. 2019. Grape rootstock response to salinity, water and combined salinity and water stress. Agronomy. 9(6):321. https://doi.org/10.3390/agronomy9060321.
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Variable salinity responses and comparative gene expression in woodland strawberry genotypes
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(Peer Reviewed Journal)
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Sandhu, D., Pudussery, M.V., Ferreira, J.F., Liu, X., Pallete, A., Grover, K.K., Hummer, K.E. 2019. Variable salinity responses and comparative gene expression in woodland strawberry genotypes. Scientia Horticulturae. 254:61-69. https://doi.org/10.1016/j.scienta.2019.04.071.
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Expression of the high-affinity K+ transporter 1 (PpHKT1) gene from almond rootstock 'Nemaguard' improved salt tolerance of transgenic Arabidopsis
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(Peer Reviewed Journal)
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Kaundal, A., Sandhu, D., Duenas, M., Ferreira, J.F. 2019. Expression of the high-affinity K+ transporter 1 (PpHKT1) gene from almond rootstock 'Nemaguard' improved salt tolerance of transgenic Arabidopsis. PLoS One. 14(3):e0214473. https://doi.org/10.1371/journal.pone.0214473.
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Functional complementation of the high-affinity K+ transporter 1 (PpHKT1) gene from almond rootstock resulted in enhanced salinity tolerance in Arabidopsis
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Understanding the landscape of salt tolerance mechanism in alfalfa
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Linking performance of almond rootstocks to underlying physiological and genetic determinants of salinity tolerance
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The high-affinity K+ transporter 1 (PpHKT1) gene from almond rootstock ‘Nemaguard’ improved salt tolerance of transgenic Arabidopsis
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Spinach (Spinacea oleracea, L.) response to salinity: nutritional value, physiological parameters, antioxidant capacity, and gene expression
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(Peer Reviewed Journal)
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Ferreira, J.F., Sandhu, D., Liu, X., Halvorson, J.J. 2018. Spinach (Spinacea oleracea, L.) response to salinity: nutritional value, physiological parameters, antioxidant capacity, and gene expression. Agriculture. 8(10):163. https://doi.org/10.3390/agriculture8100163.
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Salt tolerant alfalfa: A way to cope with an increasing soil and water salinity
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Inheritance and genetic mapping of the reduced height (Rht18) gene in wheat
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(Peer Reviewed Journal)
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Grant, N., Mohan, A., Sandhu, D., Gill, K.S. 2018. Inheritance and genetic mapping of the reduced height (Rht18) gene in wheat. Plants. 7(3):58. https://doi.org/10.3390/plants7030058.
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Seasonal and differential sesquiterpene accumulation in artemisia annua suggest selection based on both artemisinin and dihydroartemisinic acid may increase artemisinin in planta
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(Peer Reviewed Journal)
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Ferreira, J.F., Benedito, V.A., Sandhu, D., Marchese, J.A., Liu, S. 2018. Seasonal and differential sesquiterpene accumulation in artemisia annua suggest selection based on both artemisinin and dihydroartemisinic acid may increase artemisinin in planta. Frontiers in Plant Science. 9:1096. https://doi.org/10.3389/fpls.2018.01096.
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Genetic and physiological analysis of salt tolerance in almond rootstocks
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Genetics and physiology of the nuclearly inherited yellow foliar mutants in soybean
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(Peer Reviewed Journal)
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Sandhu, D., Coleman, Z., Atkinson, T., Rai, K.M., Mendu, V. 2018. Genetics and physiology of the nuclearly inherited yellow foliar mutants in soybean. Frontiers in Plant Science. 9:471. https://doi.org/10.3389/fpls.2018.00471.
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Dynamics of salt tolerance: molecular perspectives
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Sandhu, D., Kaundal, A. 2018. Dynamics of salt tolerance: molecular perspectives. In: Gosal, S.S., Wani, S.H., editors. Biotechnologies of Crop Improvement. Volume 3. Cham, Switzerland: Springer International Publishing AG. p. 25-40. https://doi.org/10.1007/978-3-319-94746-4.
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Genetic analysis of salinity responses in Medicago genotypes
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Molecular characterization and expression analysis of the Na+/H+ exchanger gene family in Medicago truncatula
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Sandhu, D., Pudussery, M.V., Kaundal, R., Suarez, D.L., Kaundal, A., Sekhon, R.S. 2018. Molecular characterization and expression analysis of the Na+/H+ exchanger gene family in Medicago truncatula. Functional and Integrative Genomics. 18(2):141-153. https://doi.org/10.1007/s10142-017-0581-9.
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Understanding genetic and physiological bases of salt tolerance in almond rootstocks
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Molecular analysis of the Na+/H+ exchanger gene family and its role in salt stress in Medicago truncatula
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Transposon-based functional characterization of soybean genes
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Sandhu, D., Bhattacharyya, M.K. 2017. Transposon-based functional characterization of soybean genes. In: Nguyen, H.T., Bhattacharyya, M.K., editors. The Soybean Genome. Cham, Switzerland: Springer International Publishing. p. 183-192. https://doi.org/10.1007/978-3-319-64198-0.
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The endogenous transposable element Tgm9 is suitable for functional analyses of soybean genes and generating novel mutants for genetic improvement of soybean
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Sandhu, D., Ghosh, J., Johnson, C., Baumbach, J., Baumert, E., Cina, T., Grant, D.M., Palmer, R.G., Bhattacharyya, M.K. 2017. The endogenous transposable element Tgm9 is suitable for functional analyses of soybean genes and generating novel mutants for genetic improvement of soybean. PLoS One. 12(8):1-14. doi: 10.1371/journal.pone.0180732.
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Isolation and characterization of a male fertility gene (Ms4) in soybean
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Variable salinity responses of 12 alfalfa genotypes and comparative expression analyses of salt-response genes
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(Peer Reviewed Journal)
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Sandhu, D., Cornacchione, M.V., Ferreira, J.F., Suarez, D.L. 2017. Variable salinity responses of 12 alfalfa genotypes and comparative expression analyses of salt-response genes. Scientific Reports. 7:42958. doi: 10.1038/srep42958.
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Isolation and characterization of the aconitate hydratase 4 (Aco4) gene from soybean
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(Peer Reviewed Journal)
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Coleman, Z., Boelter, J., Espinosa, K., Goggi, S., Palmer, R.G., Sandhu, D. 2017. Isolation and characterization of the aconitate hydratase 4 (Aco4) gene from soybean. Canadian Journal of Plant Science. 97(4):648-691. doi: 10.1139/CJPS-2016-0363.
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Understanding genetic and physiological bases of salt tolerance in almond rootstocks
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Evaluation and expression analysis of alfalfa genotypes in response to prolonged salt stress
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Soybean proteins GmTic110 and GmPsbP are crucial for chloroplast development and function
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Sandhu, D., Atkinson, T., Noll, A., Johnson, C., Espinosa, K., Boelter, J., Abel, S., Dhatt, B.K., Singsaas, E., Sepsenwol, S., Goggi, S., Palmer, R. 2016. Soybean proteins GmTic110 and GmPsbP are crucial for chloroplast development and function. Plant Science. 252:76-87 doi: 10.1016/j.plantsci.2016.07.006.
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Transposon tagging of a male-sterility, female-sterility gene, St8, revealed that the meiotic MER3 DNA helicase activity is essential for fertility in soybean
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(Peer Reviewed Journal)
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Baumbach, J., Pudake, R.N., Johnson, C., Kleinhans, K., Ollhoff, A., Palmer, R.G., Bhattacharyya, M.K., Sandhu, D. 2016. Transposon tagging of a male-sterility, female-sterility gene, St8, revealed that the meiotic MER3 DNA helicase activity is essential for fertility in soybean. PLoS One. 11(3): e0150482. doi: 10.1371/journal.pone.0150482.
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Isolation and characterization of two chlorophyll-deficient genes in soybean
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The Tgm9-induced indexed insertional mutant collection to conduct community-based reverse genetics studies in soybean
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