Jennifer Lewis
Plant Gene Expression Center
Research Molecular Biologist
Phone: (510) 559-5909
Fax: (510) 559-5678
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
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Molecular dissection of the pseudokinase ZED1 expands effector recognition to the tomato immune receptor ZAR1
- (Peer Reviewed Journal)
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Diplock, N., Baudin, M., Xiang, D., Liang, L., Dai, W., Murphy, J.M., Lucet, I.L., Hassan, J.A., Lewis, J.D. 2024. Molecular dissection of the pseudokinase ZED1 expands effector recognition to the tomato immune receptor ZAR1. Plant Physiology. Article kiae268. https://doi.org/10.1093/plphys/kiae268.
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Utilising natural diversity of kinases to rationally engineer interactions with the angiosperm immune receptor ZAR1
- (Peer Reviewed Journal)
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Diplock, N., Baudin, M., Harden, L.A., Silva, C.J., Erickson-Beltran, M.L., Hassan, J.A., Lewis, J.D. 2023. Utilising natural diversity of kinases to rationally engineer interactions with the angiosperm immune receptor ZAR1. Plant, Cell & Environment. 46(7):2238-2254. https://doi.org/10.1111/pce.14603.
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Genome-wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection
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Luneau, J.S., Baudin, M., Monnens, T., Carrere, S., Bouchez, O., Jardinaud, M., Gris, C., Francois, J., Ray, J., Torralba, B., Arlat, M., Lewis, J.D., Lauber, E., Deutschbauer, A.M., Noel, L.D., Boulanger, A. 2022. Genome-wide identification of fitness determinants in the Xanthomonas campestris bacterial pathogen during early stages of plant infection. New Phytologist. https://doi.org/10.1111/nph.18313.
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The phloem as an arena for plant pathogens
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Lewis, J.D., Knoblauch, M., Turgeon, R. 2022. The phloem as an arena for plant pathogens. Annual Review of Phytopathology. 60:77–96. https://doi.org/10.1146/annurev-phyto-020620-100946.
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What the wild things do: Mechanisms of plant host manipulation by bacterial type III-secreted effector proteins
- (Peer Reviewed Journal)
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Schreiber, K.J., Chau-Ly, I., Lewis, J.D. 2021. What the wild things do: Mechanisms of plant host manipulation by bacterial type III-secreted effector proteins. Microorganisms. 9(5). Article 1029. https://doi.org/10.3390/microorganisms9051029.
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Identification of a putative DNA-binding protein in Arabidopsis that acts as a susceptibility hub and interacts with multiple Pseudomonas syringae effectors
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Schreiber, K.J., Lewis, J.D. 2020. Identification of a putative DNA-binding protein in Arabidopsis that acts as a susceptibility hub and interacts with multiple Pseudomonas syringae effectors. Molecular Plant-Microbe Interactions. 34(4). https://doi.org/10.1094/MPMI-10-20-0291-R.
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Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors
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Schreiber, K.J., Hassan, J.A., Lewis, J.D. 2020. Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors. Plant Journal. 105(5):1274-1292. https://doi.org/10.1111/tpj.15110.
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Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors
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Schreiber, K.J., Hassan, J.A., Lewis, J.D. 2020. Arabidopsis Abscisic Acid Repressor 1 (ABR1) is a susceptibility hub that interacts with multiple Pseudomonas syringae effectors. Plant Journal. 105(5):1274-1292. https://doi.org/10.1111/tpj.15110.
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A natural diversity screen in Arabidopsis thaliana reveals determinants for HopZ1a recognition in the ZAR1-ZED1 immune complex
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Baudin, M., Martin, E., Sass, C., Hassan, J.A., Bendix, C.L., Sauceda, R., Diplock, N., Specht, C.D., Petrescu, A., Lewis, J.D. 2020. A natural diversity screen in Arabidopsis thaliana reveals determinants for HopZ1a recognition in the ZAR1-ZED1 immune complex. Plant Cell and Environment. 44(2):629-644. https://doi.org/10.1111/pce.13927.
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A compact Cascade-Cas3 system for targeted genome engineering
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Csorgo, B., Leon, L., Chau-Ly, I., Vasquez-Rifo, A., Berry, J., Mahendra, C., Crawford, E., Lewis, J.D., Bondy-Denomy, J. 2020. A compact Cascade-Cas3 system for targeted genome engineering. Nature Methods. 17:1183-1190. https://doi.org/10.1038/s41592-020-00980-w.
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Comparative genomics screen identifies microbe-associated molecular patterns from Candidatus Liberibacter spp. that elicit immune responses in plants
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Chen, Y., Bendix, C., Lewis, J.D. 2020. Comparative genomics screen identifies microbe-associated molecular patterns from Candidatus Liberibacter spp. that elicit immune responses in plants. Molecular Plant-Microbe Interactions. 33(3:539-552. https://doi.org/10.1094/MPMI-11-19-0309-R.
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High-throughput identification of resistance to Pseudomonas syringae pv. tomato in tomato using seedling flood assay
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Hassan, J.A., Chau-Ly, I.J., Lewis, J.D. 2020. High-throughput identification of resistance to Pseudomonas syringae pv. tomato in tomato using seedling flood assay. Journal of Visualized Experiments. 157.Article e60805. https://doi.org/10.3791/60805.
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Structure-function analysis of the immune receptor ZAR1 reveals key molecular interactions for activity
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Baudin, M., Martin, E.C., Petrescu, A.J., Lewis, J.D. 2019. Structure-function analysis of the immune receptor ZAR1 reveals key molecular interactions for activity. The Plant Cell. 101(2):352-370. https://doi.org/10.1111/tpj.14547.
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Structure-function analysis of ZAR1 immune receptor reveals key molecular interactions for activity
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Baudin, M., Schrieber, K., Martin, E.C., Petrescu, A.J., Lewis, J.D. 2019. Structure-function analysis of ZAR1 immune receptor reveals key molecular interactions for activity. Plant Journal. 101(2):352-370. https://doi.org/10.1111/tpj.14547.
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Protein acetylation in pathogen virulence and host defense: In vitro detection of protein acetylation by radiolabeled acetyl coenzyme A
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Schreiber, K.J., Lewis, J.D. 2019. Protein acetylation in pathogen virulence and host defense: In vitro detection of protein acetylation by radiolabeled acetyl coenzyme A. Methods in Molecular Biology. 1991:23-32. https://doi.org/10.1007/978-1-4939-9458-8_3.
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Soil mixture composition alters Arabidopsis susceptibility to Pseudomonas syringae infection
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Hassan, J.A., De La Torre-Roche, R., White, J., Lewis, J.D. 2018. Soil mixture composition alters Arabidopsis susceptibility to Pseudomonas syringae infection. Plant Direct. 2:1-13. https://doi.org/10.1002/pld3.44.
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Analysis of the ZAR1 immune complex reveals determinants for immunity and molecular interactions
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Baudin, M., Hassan, J.A., Schreiber, K.J., Lewis, J.D. 2017. Analysis of the ZAR1 immune complex reveals determinants for immunity and molecular interactions. Plant Physiology. doi:10.1104/pp.17.00441.
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A rapid seedling resistance assay identifies wild tomato lines that are resistant to Psuedomonas syringe pv. tomato race 1
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Hassan, J., Zhou, Y.J., Lewis, J.D. 2017. A rapid seedling resistance assay identifies wild tomato lines that are resistant to Psuedomonas syringe pv. tomato race 1. Molecular Plant-Microbe Interactions. 30(9):701-709. doi:10.1094/MPMI-11-16-0247-R.
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The enemy within: phloem-limited pathogens
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Bendix, C.L., Lewis, J.D. 2017. The enemy within: phloem-limited pathogens. Molecular Plant Pathology. doi:10.1111/mpp.12526.
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Plant Immunity
- (Other)
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Lewis, J.D. 2016. Plant Immunity. Seminars in Cell and Developmental Biology. 56C, p.121.
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Die another day: molecular mechanisms of effector-triggered immunity elicited by type III secreted effector proteins
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Schreiber, K.J., Baudin, M., Hassan, J.A., Lewis, J.D. 2016. Die another day: molecular mechanisms of effector-triggered immunity elicited by type III secreted effector proteins. Seminars in Cell and Developmental Biology. 56:124-133.
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A practical guide to Quantitative Interactor Screening with Next Generation Sequencing (QIS-Seq)
- (Book / Chapter)
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Gong Y., Desveaux D., Guttman D.S., Lewis J.D. 2017. A practical guide to quantitative interactor screening with next-generation sequencing (QIS-Seq). In: Tatarinova, T., Nikolsky, Y. editors. Biological Networks and Pathway Analysis. Volume 1613. New York, NY: Humana Press. p. 1-20
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Immunomodulation by the Pseudomonas syringae HopZ Type III Effector Family in Aribidopsis
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Lewis, J.D., Wilton, M., Mott, A.G., Lu, W., Hassan, J.A., Guttmann, D.S., Desveaux, D. 2014. Immunomodulation by the Pseudomonas syringae HopZ Type III Effector Family in Aribidopsis. PLoS One. 9(2):e116152.
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The rise of the undead:Pseudokinases as mediators of effector-triggered immunity
- (Peer Reviewed Journal)
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Lewis, J.D., Lo, T., Bastedo, P., Guttman, D.S., Desveaux, D. 2014. The rise of the undead:Pseudokinases as mediators of effector-triggered immunity. Plant Signaling and Behavior. 9:e27563.
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The Arabidopsis ZED1 pseudokinase is required for ZAR1-mediated immunity induced by the Pseudomonas syringae type III effector HopZ1a
- (Peer Reviewed Journal)
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Lewis, J.D., Wan, J., Hassan, J.L., Lee, A.H., Hurley, B., Jhingree, J., Lo, T., Guttman, D.S., Desveaux, D. 2013. The Arabidopsis ZED1 pseudokinase is required for ZAR1-mediated immunity induced by the Pseudomonas syringae type III effector HopZ1a. Proceedings of the National Academy of Sciences. 110(46):18722-18727.
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Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Psuedomonas syringe type III effector HopZ2
- (Peer Reviewed Journal)
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Lewis, J.D., Wan, J., Ford, R., Gong, Y., Fung, P., Wang, P.W., Desveaux, D., Gittman, D.S. 2012. Quantitative Interactor Screening with next-generation Sequencing (QIS-Seq) identifies Arabidopsis thaliana MLO2 as a target of the Psuedomonas syringe type III effector HopZ2. Biomed Central (BMC) Genomics. 13:8.
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A bacterial acetyltransferase destroys plant microtubule networks and blocks secretion
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Lee, A., Hurley, B., Felsensteiner, C., Yea, C., Ckurshumova, W., Bartetzko, V., Wang, P.W., Quach, V., Lewis, J.D., Liu, Y.C., Bornke, F., Angers, S., Wilde, A., Guttman, D.S., Desveaux, D. 2012. A bacterial acetyltransferase destroys plant microtubule networks and blocks secretion. PLoS Pathogens. 8(2): e1002523.
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The YopJ superfamily of type III efforts in plant-associated bacteria
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Lewis, J.D., Lee, A.H., Ma, W.B., Zhou, H., Guttman, D.S., Desveaux, D. 2011. The YopJ superfamily of type III efforts in plant-associated bacteria. Molecular Plant Pathology. 12(9):928-937.
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