Jason Fiedler
Cereal Crops Improvement Research
Research Plant Molecular Geneticist
Phone: (701) 239-1462
Fax:
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Publications
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Genomes of Aegilops umbellulata provide new insights into unique structural variations and genetic diversity in the U-genome for wheat improvement
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Singh, J., Gudi, S., Maughan, J., Liu, Z., Kolmer, J.A., Chen, X., Rouse, M.N., Sehgal, S., Gupta, R., Upinder, G., Fiedler, J.D., Choulet, F., Acevedo, M. 2024. Genomes of Aegilops umbellulata provide new insights into unique structural variations and genetic diversity in the U-genome for wheat improvement. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.14470.
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Can GWAS information from oat breeding programs be used to develop higher-yield oat varieties? A case study in the SDSU Oat Breeding Program
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Oliveira, G., Bazzer, S., Ayana, G., Fiedler, J.D., Nandety, R., Cafee, M. 2024. Can GWAS information from oat breeding programs be used to develop higher-yield oat varieties? A case study in the SDSU Oat Breeding Program. Meeting Abstract.
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Vegetative indices data boost genomic selection models in predicting oat grain yield
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Oliveira, G., Bazzer, S., Maimaitijiang, M., Nandety, R., Chang, J., Fiedler, J.D., Cafee, M. 2024. Vegetative indices data boost genomic selection models in predicting oat grain yield. Meeting Abstract.
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Evolution, diversity, and function of the disease susceptibility gene Snn1 in wheat
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Seneviratne, S., Shi, G., Szabo-Hever, A., Zhang, Z., Peters Haugrud, A.R., Running, K., Singh, G., Nandety, R.S., Fiedler, J.D., Mcclean, P., Xu, S.S., Friesen, T.L., Faris, J.D. 2024. Evolution, diversity, and function of the disease susceptibility gene Snn1 in wheat. The Plant Journal. 119(4):1720-1736. https://doi.org/10.1111/tpj.16879.
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Implementing multi-trait genomic selection to improve grain milling quality in oats (Avena sativa L.)
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Exploratory genomic sequence analysis reveals structural differences at key loci for growth habit, seed dormancy, and rust resistance in barley
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Massman, C., Maughn, P., Nandety, R.S., Clare, S., Fiedler, J.D., Hayes, P. 2024. Exploratory genomic sequence analysis reveals structural differences at key loci for growth habit, seed dormancy, and rust resistance in barley. Genetic Resources and Crop Evolution. https://link.springer.com/article/10.1007/s10722-024-01875-x.
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Recurrent selection for Fusarium head blight resistance in a durum wheat population
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Wang, R., Axtman, J., Leng, Y., Salsman, E., Hegstad, J., Fiedler, J.D., Xu, S.S., Zhong, S., Elias, E., Li, X. 2023. Recurrent selection for Fusarium head blight resistance in a durum wheat population. Crop Science. 64(2):617-630. https://doi.org/10.1002/csc2.21179.
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Role of non-programmed cell death inducing effectors in the Parastagonospora nodorum-wheat necrotrophic interaction
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Malvestiti, M., Kariyawasam, G., Li, J., Wyatt, N.A., Nelson, A., Skiba, R., Fiedler, J.D., Effertz, K., Liu, Z., Williams, S., Bruggeman, R., Friesen, T.L. 2024. Role of non-programmed cell death inducing effectors in the Parastagonospora nodorum-wheat necrotrophic interaction. Meeting Abstract.
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Genome-wide association study of fungicide sensitivity in a Fusarium graminearum population collected from North Dakota
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Poudel, B., Mullins, J., Fiedler, J.D., Chao, S., Zhong, S. 2024. Genome-wide association study of fungicide sensitivity in a Fusarium graminearum population collected from North Dakota. Journal of Phytopathology. https://doi.org/10.1094/PHYTO-05-23-0180-KC.
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Exploratory genomic sequence analysis reveals structural differences at key loci for growth habit, seed dormancy, and rust resistance in barley
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Massman, C., Maughn, P.J., Nandety, R., Clare, S.J., Fiedler, J.D., Hayes, P.M. 2024. Exploratory genomic sequence analysis reveals structural differences at key loci for growth habit, seed dormancy, and rust resistance in barley (abstract). Poster No. PE0348.
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Molecular cloning of the septoria nodorum blotch susceptibility gene Snn2 in wheat
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Seneviratne, S., Zhang, Z., Running, K., Peters Haugrud, A.R., Szabo-Hever, A., Singh, G., Acharya, K., Fiedler, J.D., Mclean, P., Xu, S.S., Yang, S., Friesen, T.L., Faris, J.D. 2024. Molecular cloning of the septoria nodorum blotch susceptibility gene Snn2 in wheat. Meeting Abstract. Poster No. PE0390.
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Telomere-to-telomere genome assembly and resequencing of 20 Aegilops umbellulata genomes reveals broad genetic and phenotypic diversity for novel disease resistance traits
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Singh, J., Gudi, S., Maughan, J., Liu, Z., Kolmer, J.A., Chen, X., Rouse, M.N., Sehgal, S., Fiedler, J.D., Choulet, F., Acevedo, M., Gupta, R., Upinder, G. 2024. Telomere-to-telomere genome assembly and resequencing of 20 Aegilops umbellulata genomes reveals broad genetic and phenotypic diversity for novel disease resistance traits (abstract). Poster No. PE0420.
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Does vromindolines influence the stability of oat-based beverage?
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Plastid terminal oxidase is required for chloroplast biogenesis in barley
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Overlander-Chen, M., Fiedler, J.D., Carlson, C.H., Yang, S. 2023. Plastid terminal oxidase is required for chloroplast biogenesis in barley. Plant Journal. https://doi.org/10.1111/tpj.16552.
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Genome-wide association study of host resistance to Hessian fly in barley
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Karki, M., Chu, C.N., Anderson, K.M., Nandety, R.S., Fiedler, J.D., Schachterle, J.K., Bruggeman, R., Liu, Z., Yang, S. 2023. Genome-wide association study of host resistance to Hessian fly in barley. Phytopathology. https://doi.org/10.1094/PHYTO-06-23-0192-R.
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Registration of ‘WGC002’ spring wheat containing wild grass-derived Fusarium head blight resistance gene Fhb7Th2
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Cai, X., Danilova, T.V., Charif, A., Wang, F., Zhang, W., Zhang, M., Ren, S., Zhu, X., Zhong, S., Dykes, L., Fiedler, J.D., Xu, S.S., Frels, K., Wegulo, S., Boehm Jr, J.D., Funnell-Harris, D.L. 2024. Registration of ‘WGC002’ spring wheat containing wild grass-derived Fusarium head blight resistance gene Fhb7Th2. Journal of Plant Registrations. 18(1):179-186. https://doi.org/10.1002/plr2.20342.
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A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat
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Leng, Y., Du, Y., Fiedler, J.D., Haridas, S., Grigoriev, I., Zhong, S. 2024. A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat. PhytoFrontiers. 4(2):247-250. https://doi.org/10.1094/PHYTOFR-08-23-0108-A.
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Genetic and physical localization of a major susceptibility gene to Pyrenophora teres f. maculata in barley
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Alhashel, A., Fiedler, J.D., Nandety, R., Skiba, R., Bruggeman, R., Baldwin, T., Friesen, T.L., Yang, S. 2023. Genetic and physical localization of a major susceptibility gene to Pyrenophora teres f. maculata in barley. Theoretical and Applied Genetics. 136. Article e118. https://doi.org/10.1007/s00122-023-04367-1.
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Registration of “ND Frohberg” hard red spring wheat
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Fiedler, J.D., Friesen, T.L., Rouse, M.N., Jin, Y., Green, A.J., Mergoum, M., Frohberg, R., Underdahl, J., Walz, A., Seiland, T. 2023. Registration of “ND Frohberg” hard red spring wheat. Journal of Plant Registrations. 17:385-396. https://doi.org/10.1002/plr2.20291.
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Genetic and physical mapping of oat adult plant resistance loci against Puccinia coronata f. sp. avenae
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Nazareno, E., Fiedler, J.D., Naakorkoi, A., Miller, M., Figueroa, M., Kianian, S. 2023. Genetic and physical mapping of oat adult plant resistance loci against Puccinia coronata f. sp. avenae. Phytopathology. https://doi.org/10.1094/phyto-10-22-0395-r.
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Genome-wide association analyses of leaf rust resistance in cultivated emmer wheat
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Lhamo, D., Sun, Q., Zhang, Q., Li, X., Fiedler, J.D., Xia, G., Faris, J.D., Gu, Y.Q., Gill, U., Cai, X., Acevedo, M., Xu, S.S. 2023. Genome-wide association analyses of leaf rust resistance in cultivated emmer wheat. Theoretical and Applied Genetics. 136. Article 20. https://doi.org/10.1007/s00122-023-04281-6.
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Development of diagnostic molecular markers for the multi-pathogen susceptibility gene Tsn1
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Running, K., Singh, G., Szabo-Hever, A., Peters Haugrud, A., Zhang, Z., Seneviratne, S., Fiedler, J.D., Friesen, T.L., Faris, J.D. 2022. Development of diagnostic molecular markers for the multi-pathogen susceptibility gene Tsn1 [abstract]. Plant and Animal Genome 30 Conference. Poster No. PO0535.
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Genetic diversity and marker-assisted elimination of the Snn1 gene in wheat
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Seneviratne, S., Shi, G., Szabo-Hever, A., Zhang, Z., Peters Haugrud, A., Running, K., Singh, G., Nandety, R., Fiedler, J.D., Xu, S.S., Friesen, T.L., Mcclean, P., Faris, J.D. 2022. Genetic diversity and marker-assisted elimination of the Snn1 gene in wheat. Meeting Abstract. Poster No. PO0487.
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Analysis and identification of QTL for resistance to Sclerotinia sclerotiorum in pea (Pisum sativum L.)
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Ashtari Mahini, R., Kumar, A., Elias, E.M., Fiedler, J.D., Porter, L.D., McPhee, K.E. 2020. Analysis and identification of QTL for resistance to Sclerotinia sclerotiorum in pea (Pisum sativum L.). Frontiers in Genetics. 11. Article 587968. https://doi.org/10/3389/fgene.2020.567968.
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Cytogenetic and genomic characterization of a novel tall wheatgrass-derived Fhb7 allele integrated into wheat B genome
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Zhang, W., Danilova, T.V., Mingyi, Z., Ren, S., Zhu, X., Zhang, Q., Zhong, S., Dykes, L., Fiedler, J.D., Xu, S.S., Frels, K., Wegulo, S., Boehm Jr, J.D., Cai, X. 2022. Cytogenetic and genomic characterization of a novel tall wheatgrass-derived Fhb7 allele integrated into wheat B genome. Journal of Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-022-04228-3.
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Registration of “MT Sidney” hard red spring wheat
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A SQUAMOSA promoter-binding protein-like transcription factor controls crop ideotype for high productivity in barley
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Yang, S., Overlander-Chen, M., Carlson, C.H., Fiedler, J.D. 2022. A SQUAMOSA promoter-binding protein-like transcription factor controls crop ideotype for high productivity in barley. Plant Direct. 6(9). Article e450. https://doi.org/10.1002/pld3.450.
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Host and pathogen genetics reveal an inverse gene-for-gene association in the Pyrenophora teres f. maculata – barley pathosystem
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Skiba, R., Wyatt, N.A., Kariyawasam, G., Fiedler, J.D., Yang, S., Brueggeman, R., Friesen, T.L. 2022. Host and pathogen genetics reveal an inverse gene-for-gene association in the Pyrenophora teres f. maculata – barley pathosystem. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-022-04204-x.
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Archetypes of inflorescence: Genome-wide association networks of panicle morphometric, growth, and disease variables in a multiparent oat population
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Carlson, C.H., Fiedler, J.D., Naraghi, S., Nazareno, E., Ardayfio, N., Mcmullen, M., Kianian, S. 2022. Archetypes of inflorescence: Genome-wide association networks of panicle morphometric, growth, and disease variables in a multiparent oat population. Genetics. https://doi.org/10.1093/genetics/iyac128.
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A reference-anchored oat linkage map reveals quantitative trait loci conferring adult plant resistance to crown rust (Puccinia coronata f. sp. avenae)
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Nazareno, E.S., Fiedler, J.D., Miller, M.E., Figueroa, M., Kianian, S. 2022. A reference-anchored oat linkage map reveals quantitative trait loci conferring adult plant resistance to crown rust (Puccinia coronata f. sp. avenae). Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-022-04128-6.
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A genome wide association study in a North American oat breeding population
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Naakorkoi, A., Naraghi, S.M., Mcmullen, M.S., Fiedler, J.D. 2022. A genome wide association study in a North American oat breeding population [abstract]. Plant and Animal Genome Conference. Poster No.43772.
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Genetic architecture of panicle archetypes in ten diverse oat (Avena sativa) mapping populations
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Carlson, C.H., Fiedler, J.D., Nazareno, E.S., Naraghi, S.M., Ardayfio, N.K., Mcmullen, M., Kianian, S. 2022. Genetic architecture of panicle archetypes in ten diverse oat (Avena sativa) mapping populations [abstract]. Plant and Animal Genome Conference XXIX. Poster No.0355.
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Map-based cloning of the Liguleless 1 gene regulating architecture in barley
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Yang, S., Overlander, M., Fiedler, J.D. 2022. Map-based cloning of the Liguleless 1 gene regulating architecture in barley [abstract]. Plant and Animal Genome Conference. Poster No.0315.
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Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation
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Jordan, K., Bradbury, P., Miller, Z., Nyine, M., He, F., Guttieri, M.J., Brown Guedira, G.L., Buckler Iv, E.S., Jannink, J., Akhunov, E., Ward, B.P., Bai, G., Bowden, R.L., Fiedler, J.D., Faris, J.D. 2021. Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation. G3 Genes/Genomes/Genetics. https://doi.org/10.1101/2021.06.10.447944.
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Genetic mapping of host resistance to the Pyrenophora teres f. maculata isolate 13IM8.3
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Alhashel, A., Poudel, R., Fiedler, J.D., Carlson, C.H., Rasmussen, J., Baldwin, T., Friesen, T.L., Brueggeman, R., Yang, S. 2021. Genetic mapping of host resistance to the Pyrenophora teres f. maculata isolate 13IM8.3. Genes, Genomes, Genetics. https://doi.org/10.1093/g3journal/jkab341.
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Map-based cloning of the Gpa1 gene regulating chloroplast biogenesis in barley
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Yang, S., Overlander, M., Fiedler, J.D. 2021. Map-based cloning of the Gpa1 gene regulating chloroplast biogenesis in barley [abstract]. Plant Biology Conference 2021. p.1082485.
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Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation
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Jordan, K., Bradbury, P., Miller, Z., Nyine, M., He, F., Guttieri, M.J., Brown Guedira, G.L., Buckler Iv, E.S., Jannink, J., Akhunov, E., Ward, B.P., Bai, G., Bowden, R.L., Fiedler, J.D., Faris, J.D. 2021. Development of the Wheat Practical Haplotype Graph Database as a Resource for Genotyping Data Storage and Genotype Imputation. bioRxiv. https://doi.org/10.1101/2021.06.10.447944.
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Function and evolution of allelic variation of Sr13 conferring resistance to stem rust in tetraploid wheat (Triticum turgidum L.)
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Gill, B., Klindworth, D.L., Rouse, M.N., Zhang, J., Zhang, Q., Sharma, J.S., Chu, C.N., Long, Y., Chao, S., Olivera, P.D., Friesen, T.L., Zhong, S., Jin, Y., Faris, J.D., Fiedler, J.D., Elias, E.M., Liu, S., Cai, X., Xu, S.S. 2021. Function and evolution of allelic variation of Sr13 conferring resistance to stem rust in tetraploid wheat (Triticum turgidum L.). Plant Journal. 106:1674-1691. https://doi.org/10.1111/tpj.15263.
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Genetic analysis of the barley variegation mutant, grandpa1.a
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Yang, S., Overlander, M., Fiedler, J.D. 2021. Genetic analysis of the barley variegation mutant, grandpa1.a. BMC Plant Biology. 21(1):134. https://doi.org/10.1186/s12870-021-02915-9.
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A new diversity panel for winter rapeseed (Brassica napus, L.) genome wide association studies
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Horvath, D.P., Stamm, M., Talukder, Z., Fiedler, J.D., Horvath, A., Horvath, G., Chao, W.S., Anderson, J.V. 2020. A new diversity panel for winter rapeseed (Brassica napus, L.) genome wide association studies. Agronomy Journal. 10(12):2006. https://doi.org/10.3390/agronomy10122006.
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Homoeology of Thinopyrum distichum single chromosome additions in triticale and wheat
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Marais, F., Fiedler, J.D., Tao, H., Pirseyedi, S., Hegstad, J., Ganaparthi, V., Liu, Y., Bisek, B., Li, X. 2020. Homoeology of Thinopyrum distichum single chromosome additions in triticale and wheat. Crop Science. https://doi.org/10.1002/csc2.20357.
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A novel adult plant leaf rust resistance gene Lr2K38 mapped on wheat chromosome 1AL
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Sapkota, S., Mergoum, M., Kumar, A., Fiedler, J.D., Johnson, J., Bland, D., Lopez, B., Sutton, S., Ghimire, B., Buck, J., Chen, Z., Harrison, S. 2020. A novel adult plant leaf rust resistance gene Lr2K38 mapped on wheat chromosome 1AL. The Plant Genome. 13:e20061. https://doi.org/10.1002/tpg2.20061.
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Dissection and physical mapping of wheat chromosome 7B by inducing meiotic recombination with its homoeologues in Aegilops speltoides and Thinopyrum elongatum
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Zhang, M., Zhang, W., Zhu, X., Sun, Q., Yan, C., Xu, S.S., Fiedler, J.D., Cai, X. 2020. Dissection and physical mapping of wheat chromosome 7B by inducing meiotic recombination with its homoeologues in Aegilops speltoides and Thinopyrum elongatum. Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-020-03680-3.
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Genetic diversity analysis of a flax (Linum usitatissimum L.) global collection
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Hoque, A., Fiedler, J.D., Rahman, M. 2020. Genetic diversity analysis of a flax (Linum usitatissimum L.) global collection. BMC Genetics. 21:557. https://doi.org/10.1186/s12864-020-06922-2.
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Genome-wide association analysis of natural variation in seed tocochromanols of barley
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Mahalingam, R., Sallam, A.H., Steffenson, B.J., Fiedler, J.D., Walling, J.G. 2020. Genome-wide association analysis of natural variation in seed tocochromanols of barley. The Plant Genome. e20039. https://doi.org/10.1002/tpg2.20039.
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Meta-QTL analysis of tan spot resistance in wheat
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Liu, Y., Salsman, E., Wang, R., Galagedara, N., Zhang, Q., Fiedler, J.D., Liu, Z., Xu, S.S., Faris, J.D., Li, X. 2020. Meta-QTL analysis of tan spot resistance in wheat. Theoretical and Applied Genetics. 133:2363-2375. https://doi.org/10.1007/s00122-020-03604-1.
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Genome-wide association mapping of tan spot resistance in a worldwide collection of durum wheat
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Galagedara, N., Liu, Y., Fiedler, J.D., Shi, G., Chao, S., Xu, S.S., Faris, J.D., Li, X., Liu, Z. 2020. Genome-wide association mapping of tan spot resistance in a worldwide collection of durum wheat. Theoretical and Applied Genetics. 133:2227–2237. https://doi.org/10.1007/s00122-020-03593-1.
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Partitioning and physical mapping of wheat chromosome 3B and its homoeologue 3E in Thinopyrum elongatum by inducing homoeologous recombination
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Zhang, M., Zhang, W., Zhu, X., Sun, Q., Chao, S., Yan, C., Xu, S.S., Fiedler, J.D., Cai, X. 2020. Partitioning and physical mapping of wheat chromosome 3B and its homoeologue 3E in Thinopyrum elongatum by inducing homoeologous recombination. Theoretical and Applied Genetics. 133:1277-1289. https://doi.org/10.1007/s00122-020-03547-7.
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QTL mapping of resistance to tan spot induced by race 2 of Pyrenophora tritici-repentis in tetraploid wheat
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Liu, Y., Salsman, E., Fiedler, J.D., Hegstad, J.B., Liu, Z., Faris, J.D., Xu, S.S., Li, X. 2019. QTL mapping of resistance to tan spot induced by race 2 of Pyrenophora tritici-repentis in tetraploid wheat. Theoretical and Applied Genetics. 133:433-442. https://doi.org/10.1007/s00122-019-03474-2.
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Genetic mapping of phosphorus use in hard red spring wheat cultivated in the Northern Great Plains over the last century
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Fiedler, J.D., Ardayfio, N., Paler, J., Goos, J. 2020. Genetic mapping of phosphorus use in hard red spring wheat cultivated in the Northern Great Plains over the last century [abstract]. Plant and Animal Genome Conference XXVIII. PE0960.
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Molecular mapping of loci conferring susceptibility to spot blotch and resistance to powdery mildew in barley using the sequencing-based genotyping approach
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Leng, Y., Zhao, M., Fiedler, J.D., Dreiseitl, A., Chao, S., Li, X., Zhong, S. 2020. Molecular mapping of loci conferring susceptibility to spot blotch and resistance to powdery mildew in barley using the sequencing-based genotyping approach. Phytopathology. 110(2):440-446. https://doi.org/10.1094/PHYTO-08-19-0292-R.
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Molecular dissection of resistance gene cluster and candidate gene identification of Pl17 and Pl19 in sunflower by whole-genome resequencing
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Ma, G.J., Song, Q., Underwood, W., Zhang, Z.W., Fiedler, J.D., Xuehui, L., Qi, L. 2019. Molecular dissection of resistance gene cluster and candidate gene identification of Pl17 and Pl19 in sunflower by whole-genome resequencing. Scientific Reports. 9:14974. https://doi.org/10.1038/s41598-019-50394-8.
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Genetic mapping and prediction analysis of FHB resistance in a hard red spring wheat breeding population
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Liu, Y., Salsman, E., Fiedler, J.D., Hegstad, J., Green, A., Mergoum, M., Zhong, S., Li, X. 2019. Genetic mapping and prediction analysis of FHB resistance in a hard red spring wheat breeding population. Frontiers in Plant Science. 10:1007. https://doi.org/10.3389/fpls.2019.01007.
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Genetic Diversity and Selective Sweep Analysis of Tetraploid Wheat Populations with Different Levels of Domestication and Adaptation
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Fiedler, J.D., Liu, Y., Xu, S.S., Faris, J.D., Elias, E., Li, X. 2019. Genetic Diversity and Selective Sweep Analysis of Tetraploid Wheat Populations with Different Levels of Domestication and Adaptation [abstract]. 1st International Wheat Congress. July 21-26, 2019. Saskatoon, Saskatchewan, Canada. Poster No. P394.
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High-density SNP linkage map of lowland Panicum virgatum L. (switchgrass) using genotyping by sequencing
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Fiedler, J.D., Lanzatella-Craig, C., Okada, M., Jenkins, J., Schmutz, J., Tobias, C.M. 2015. High-density SNP linkage map of lowland Panicum virgatum L. (switchgrass) using genotyping by sequencing. The Plant Genome. doi: 10.3835/plantgenome2014.10.0065.
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