David P Horvath
Weed and Insect Biology Research
Research Plant Physiologist
Phone: (701) 239-1255
Fax: (701) 239-1252
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
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A novel strategy to map a locus associated with flowering time in canola (Brassica napus L.)
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Long, Y., Zheng, P., Anderson, J.V., Horvath, D.P., Sthapit Kandel, J., Li, X., Rahman, M., Chao, W.S. 2024. A novel strategy to map a locus associated with flowering time in canola (Brassica napus L.). Theoretical and Applied Genetics. https://doi.org/10.1007/s00438-024-02191-w.
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QTL mapping to identify loci and candidate genes associated with freezing tolerance trait in camelina sativa.
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Shaikh, T., Rahman, M., Anderson, J.V., Sthapit Kandel, J., Vaughn, J.N., Smith, T.P., Abernathy, B., Ontano, A., Dobrin, B.H., Horvath, D.P., Dorn, K.M. 2024. QTL mapping to identify loci and candidate genes associated with freezing tolerance trait in camelina sativa.. Industrial Crops and Products. 222:119562. https://doi.org/10.1016/j.indcrop.2024.119562.
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Assembly and analysis of sequence from a spring and winter type Camelina sativa by whole genome PacBio Hifi technologies
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Ontano, A., Dobrin, B.H., Smith, T.P., Abernathy, B., Sthapit Kandel, J., Shaikh, T., Rahman, M., Anderson, J.V., Vaughn, J.N., Horvath, D.P. 2024. Assembly and analysis of sequence from a spring and winter type Camelina sativa by whole genome PacBio Hifi technologies. Industrial Crops and Products. 221:119346. https://doi.org/10.1016/j.indcrop.2024.119346.
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Identification of quantitative trait loci for flowering time in a Camelina biparental population developed from winter- and spring-type parents
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Sthapit Kandel, J., Talukder, M.I., Shaikh, T., Horvath, D.P., Li, X., Anderson, J.V. 2024. Identification of quantitative trait loci for flowering time in a Camelina biparental population developed from winter- and spring-type parents. Industrial Crops and Products. 220. Article 119259. https://doi.org/10.1016/j.indcrop.2024.119259.
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Agricultural Research Service weed science research: past, present, and future
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Young, S.L., Anderson, J.V., Baerson, S.R., Bajsa Hirschel, J.N., Blumenthal, D.M., Boyd, C.S., Boyette, C.D., Brennan, E.B., Cantrell, C.L., Chao, W.S., Chee Sanford, J.C., Clements, D.D., Dray Jr, F.A., Duke, S.O., Porter, K.M., Fletcher, R.S., Fulcher, M.R., Gaskin, J., Grewell, B.J., Hamerlynck, E.P., Hoagland, R.E., Horvath, D.P., Law, E.P., Madsen, J., Martin, D.E., Mattox, C.M., Mirsky, S.B., Molin, W.T., Moran, P.J., Mueller, R.C., Nandula, V.K., Newingham, B.A., Pan, Z., Porensky, L.M., Pratt, P.D., Price, A.J., Rector, B.G., Reddy, K.N., Sheley, R.L., Smith, L., Smith, M., Snyder, K.A., Tancos, M.A., West, N.M., Wheeler, G.S., Williams, M., Wolf, J.E., Wonkka, C.L., Wright, A.A., Xi, J., Ziska, L.H. 2023. Agricultural Research Service weed science research: past, present, and future. Weed Science. 71(4):312-327. https://doi.org/10.1017/wsc.2023.31.
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Overwintering camelina and canola/rapeseed show promise for improving integrated weed management approaches in the upper Midwestern U.S
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Chao, W.S., Anderson, J.V., Li, X., Gesch, R.W., Berti, M., Horvath, D.P. 2023. Overwintering camelina and canola/rapeseed show promise for improving integrated weed management approaches in the upper Midwestern U.S. Plants. 12(6). Article 1329. https://doi.org/10.3390/plants12061329.
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Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions
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Horvath, D.P., Doherty, C.J., Desai, J., Clark, N.M., Anderson, J.V., Chao, W.S. 2023. Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions. AoB Plants. https://doi.org/10.1093/aobpla/plad013.
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Homozygosity mapping identified loci and candidate genes responsible for freezing tolerance in Camelina sativa
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Shaikh, T., Rahman, M., Horvath, D.P., Smith, T.P., Anderson, J.V., Chao, W.S. 2023. Homozygosity mapping identified loci and candidate genes responsible for freezing tolerance in Camelina sativa. The Plant Genome. 16(2). Article e20318. https://doi.org/10.1002/tpg2.20318.
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Weed-induced crop yield loss: A new paradigm and new challenges
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Horvath, D.P., Clay, S., Swanton, C., Anderson, J.V., Chao, W.S. 2023. Weed-induced crop yield loss: A new paradigm and new challenges. Trends in Plant Science. 28(5):567-582. https://doi.org/10.1016/j.tplants.2022.12.014.
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Loci and markers identification associated with freezing tolerant trait in Camelina sativa
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Genetic loci associated with freezing tolerance in a European rapeseed (Brassica napus L.) diversity panel identified by genome-wide association mapping
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Chao, W.S., Li, X., Horvath, D.P., Anderson, J.V. 2022. Genetic loci associated with freezing tolerance in a European rapeseed (Brassica napus L.) diversity panel identified by genome-wide association mapping. Plant Direct. 6(5):e405. https://doi.org/10.1002/pld3.405.
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Comparative study on physiological responses and gene expression of bud endodormancy release between two herbaceous peony cultivars (Paeonia lactiflora Pall.) with contrasting chilling requirements
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Wang, X., Zhang, R., Huang, Q., Shi, X., Li, D., Sao, L., Xu, T., Horvath, D.P., Zhang, J., Xia, Y. 2022. Comparative study on physiological responses and gene expression of bud endodormancy release between two herbaceous peony cultivars (Paeonia lactiflora Pall.) with contrasting chilling requirements. Frontiers in Plant Science. 12. Article e772285. https://doi.org/10.3389/fpls.2021.772285.
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Analysis of Camelina sativa transcriptomes identified specific transcription factors and processes associated with freezing tolerance in a winter biotype
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Anderson, J.V., Neubauer, M., Horvath, D.P., Chao, W.S., Berti, M.T. 2021. Analysis of Camelina sativa transcriptomes identified specific transcription factors and processes associated with freezing tolerance in a winter biotype. Industrial Crops and Products. 177. Article 114414. https://doi.org/10.1016/j.indcrop.2021.114414.
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Transcript profiles differentiate cold acclimation-induced processes in a summer and winter biotype of camelina
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Wang, H., Dogramaci, M., Anderson, J.V., Horvath, D.P., Chao, W.S. 2021. Transcript profiles differentiate cold acclimation-induced processes in a summer and winter biotype of camelina. Plant Molecular Biology Reporter. https://doi.org/10.1007/s11105-021-01324-4.
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Analysis of molecular mechanisms associated with low temperature induced freezing tolerance and floral competence in Camelina sativa
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Corn-alfalfa intercropping with different row spacings
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Genome-wide association mapping of freezing tolerance in canola (Brassica napus L.)
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Chao, W.S., Horvath, D.P., Stamm, M.J., Anderson, J.V. 2021. Genome-wide association mapping of freezing tolerance in canola (Brassica napus L.). Agronomy Journal. 11(2):233. https://doi.org/10.3390/agronomy11020233.
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A new diversity panel for winter rapeseed (Brassica napus, L.) genome wide association studies
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Horvath, D.P., Stamm, M., Talukder, Z., Fiedler, J.D., Horvath, A., Horvath, G., Chao, W.S., Anderson, J.V. 2020. A new diversity panel for winter rapeseed (Brassica napus, L.) genome wide association studies. Agronomy Journal. 10(12):2006. https://doi.org/10.3390/agronomy10122006.
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Genome wide association studies and transcriptome changes during acclimation and deacclimation in divergent canola varieties
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Horvath, D.P., Jiaping, Z., Chao, W.S., Ashok, M., Rahman, M., Anderson, J.V. 2020. Genome wide association studies and transcriptome changes during acclimation and deacclimation in divergent canola varieties. International Journal of Molecular Sciences. 21(23):9148. https://doi.org/10.3390/ijms21239148.
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Teosinte (Zea mays ssp parviglumis) transcriptomic response to weed stress identifies similarities and differences between varieties and with modern corn varieties
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Bruggeman, S., Horvath, D.P., Fennell, A., Gonzalez-Hernandez, J., Clay, S.A. 2020. Teosinte (Zea mays ssp parviglumis) transcriptomic response to weed stress identifies similarities and differences between varieties and with modern corn varieties. PLoS One. 15(8):e0237715. https://doi.org/10.1371/journal.pone.0237715.
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Transcriptome analysis suggests cytokinin and gibberellin signaling may account for differences between spring and winter canola (B. napus) root development
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Arifuzzaman, M., Horvath, D.P., Rahman, M. 2020. Transcriptome analysis suggests cytokinin and gibberellin signaling may account for differences between spring and winter canola (B. napus) root development. Journal of Plant Biology. https://doi.org/10.1007/s12374-020-09270-6.
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Increasing freezing tolerance in canola through a better understanding of cold deacclimation
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Anderson, J.V., Horvath, D.P., Chao, W.S. 2021. Increasing freezing tolerance in canola through a better understanding of cold deacclimation. 2019-2020 Canola Research Update. pp 1-2.
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Varying weed densities alter the corn transcriptome, highlighting a core set of weed-induced genes and processes with potential for manipulating weed tolerance
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Horvath, D.P., Clay, S.A., Bruggeman, S.A., Anderson, J.V., Chao, W.S., Yeater, K.M. 2019. Varying weed densities alter the corn transcriptome, highlighting a core set of weed-induced genes and processes with potential for manipulating weed tolerance. The Plant Genome. 12(3):1-9. https://doi.org/10.3835/plantgenome2019.05.0035.
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Annual growth cycle observation, hybridization and forcing culture for improving the ornamental application of Paeonia lactiflora Pall. in the low-latitude regions
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Zhang, J., Zhang, D., Wei, J., Xiaohua, S., Huaqiao, D., Qiu, S., Guo, J., Li, D., Zhu, K., Zhou, J., Horvath, D.P., Xia, Y. 2019. Annual growth cycle observation, hybridization and forcing culture for improving the ornamental application of Paeonia lactiflora Pall. in the low-latitude regions. PLoS One. 14(6):e0218164. https://doi.org/10.1371/journal.pone.0218164.
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Genes associated with chloroplasts and hormone-signaling, and transcription factors other than CBFs are associated with differential survival after low temperature treatments of Camelina sativa biotypes
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Horvath, D., Anderson, J.V., Chao, W.S., Zheng, P., Buchwaldt, M., Parkin, I.A.P., Dorn, K. 2019. Genes associated with chloroplasts and hormone-signaling, and transcription factors other than CBFs are associated with differential survival after low temperature treatments of Camelina sativa biotypes. PLoS One. 14(5):e0217692. https://doi.org/10.1371/journal.pone.0217692.
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RNA Sequencing Characterizes Transcriptomes Differences in Cold Response Between Northern and Southern Alternanthera philoxeroides and Highlight Adaptations Associated With Northward Expansion
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Liu, D., Horvath, D., Li, P., Liu, W. 2019. RNA sequencing characterizes transcriptomes differences in cold response between northern and southern Alternanthera philoxeroides and highlight adaptations associated with northward expansion. Frontiers in Plant Science. 10:24. https://doi.org/10.3389/fpls.2019.00024.
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Selection of endogenous reference genes for qRT-PCR analysis in Camelina sativa and identification of FLOWERING LOCUS C allele-specific markers to differentiate summer- and winter-biotypes
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Chao, W.S., Wang, H., Horvath, D.P., Anderson, J.V. 2019. Selection of endogenous reference genes for qRT-PCR analysis in Camelina sativa and identification of FLOWERING LOCUS C allele-specific markers to differentiate summer- and winter-biotypes. Industrial Crops and Products. 129:495-502. https://doi.org/10.1016/j.indcrop.2018.12.017.
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Genome-wide association study for electrolyte leakage in
rapeseed/canola (Brassica napus L.)
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Fiebelkorn, D., Horvath, D., Rahman, M. 2018. Genome-wide association study for electrolyte leakage in rapeseed/canola (Brassica napus L.). Molecular Breeding. 38:129. https://doi.org/10.1007/s11032-018-0892-0.
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OMICS in weed science research: A perspective from genomics, transcriptomics and metabolomics approaches
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Maroli, A.S., Gaines, T.A., Foley, M.E., Duke, S.O., Dogramaci, M., Anderson, J.V., Horvath, D.P., Chao, W.S., Tharayil, N. 2018. OMICS in weed science research: A perspective from genomics, transcriptomics and metabolomics approaches. Weed Science. https://doi.org/10.1017/wsc.2018.33.
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Expression of Flowering Locus C and a frame shift mutation of this gene on chromosome 20 differentiate a summer and winter annual biotype of Camelina sativa
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Anderson, J.V., Horvath, D.P., Dogramaci, M., Dorn, K.M., Chao, W.S., Watkin, E.E., Hernandez, A.G., Marks, M.D., Gesch, R. 2018. Expression of FLOWERING LOCUS C and a frameshift mutation of this gene on chromosome 20 differentiate a summer and winter annual biotype of Camelina sativa. Plant Direct. 2:1-14. https://doi.org/10.1002/pld3.60.
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Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed-free period
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Horvath, D.P., Bruggeman, S., Moriles-Miller, J., Anderson, J.V., Dogramaci, M., Scheffler, B.E., Hernandez, A.G., Foley, M.E., Clay, S. 2018. Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed-free period. Plant Direct. Available: https://onlinelibrary.wiley.com/doi/abs/10.1002/pld3.57.
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Gene space and transcriptome assemblies of leafy spurge (Euphorbia esula) identify promoter sequences, repetitive elements, high-quality markers, and a full-length chloroplast genome
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Horvath, D.P., Patel, S., Dogramaci, M., Chao, W.S., Anderson, J.V., Foley, M.E., Scheffler, B., Lazo, G., Dorn, K., Yan, C., Childers, A., Schatz, M., Marcus, S. 2018. Gene space and transcriptome assemblies of leafy spurge (Euphorbia esula) identify promoter sequences, repetitive elements, high-quality markers, and a full-length chloroplast genome. Weed Science. 66(3):355-367. https://doi.org/10.1017/wsc.2018.2.
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Foliar glyphosate treatment alters transcript and hormone profiles in crown buds of leafy spurge and induces dwarfed and bushy phenotypes throughout its perennial life cycle
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Dogramaci, M., Anderson, J.V., Chao, W.S., Horvath, D.P., Hernandez, A.G., Mikel, M.A., Foley, M.E. 2017. Foliar glyphosate treatment alters transcript and hormone profiles in crown buds of leafy spurge and induces dwarfed and bushy phenotypes throughout its perennial life cycle. The Plant Genome. https://doi.org/10.3835/plantgenome2016.09.0098.
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Comprehensive transcriptome analyses reveal differential gene expression profiles of Camellia sinensis axillary buds at para-, endo-, ecodormancy, and bud flush stages
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Hao, X., Yang, Y., Yue, C., Wang, L., Horvath, D.P., Wang, X. 2017. Comprehensive transcriptome analyses reveal differential gene expression profiles of Camellia sinensis axillary buds at para-, endo-, ecodormancy, and bud flush stages. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2017.00553.
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Comparison of phytohormone levels and transcript profiles during seasonal dormancy transitions in underground adventitious buds of leafy spurge
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Chao, W.S., Dogramaci, M., Horvath, D.P., Anderson, J.V., Foley, M.E. 2017. Comparison of phytohormone levels and transcript profiles during seasonal dormancy transitions in underground adventitious buds of leafy spurge. Plant Molecular Biology. 94(3):281-302.
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Phytohormone balance and stress-related cellular responses are involved in the transition from bud to shoot growth in leafy spurge
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Chao, W.S., Dogramaci, M., Horvath, D.P., Anderson, J.V., Foley, M.E. 2016. Phytohormone balance and stress-related cellular responses are involved in the transition from bud to shoot growth in leafy spurge. Biomed Central (BMC) Plant Biology. 16:47. https://doi.org/10.1186/s12870-016-0735-2.
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Extensive transcriptome changes during natural onset and release of vegetative bud dormancy in Populus
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Howe, G.T., Horvath, D.P., Dharmawardhana, P., Priest, H.D., Mockler, T.C., Strauss, S.H. 2015. Extensive transcriptome changes during natural onset and release of vegetative bud dormancy in Populus. Frontiers in Plant Science. 6:989. https://doi.org/10.3389/fpls.2015.00989.
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Glyphosate’s impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching
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Dogramaci, M., Foley, M.E., Horvath, D.P., Hernandez, A.G., Khetani, R.S., Fields, C.J., Keating, K.M., Mikel, M.A., Anderson, J.V. 2015. Glyphosate’s impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching. Biomed Central (BMC) Genomics. 16:395. https://doi.org/10.1186/S12864-015-1627-9.
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Coordinating expression of FLOWERING LOCUS T by DORMANCY ASSOCIATED MADS-BOX-like genes in leafy spurge
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Hao, X., Chao, W., Yang, Y., Horvath, D. 2015. Coordinating expression of FLOWERING LOCUS T by DORMANCY ASSOCIATED MADS-BOX-like genes in leafy spurge. PLoS One. 10(5):e0126030. https://doi.org/10.1371/journal.pone.0126030.
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RNAseq reveals weed-induced PIF3-like as a candidate target to manipulate weed stress response in soybean
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Horvath, D.P., Hansen, S.A., Moriles-Miller, J.C., Pierik, R., Yan, C., Clay, D.E., Scheffler, B., Clay, S.A. 2015. RNAseq reveals weed-induced PIF3-like as a candidate target to manipulate weed stress response in soybean. New Phytologist. 207:196-210. https://doi.org/10.1111/nph.13351.
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Key molecular processes of the diapause to post-diapause quiescence transition in the alfalfa leafcutting bee Megachile rotundata identified by comparative transcriptome analysis
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Yocum, G.D., Rinehart, J.P., Horvath, D.P., Kemp, W.P., Bosch, J., Alroobi, R., Salem, S. 2015. Key molecular processes of the diapause to post-diapause quiescence transition in the alfalfa leafcutting bee Megachile rotundata identified by comparative transcriptome analysis. Physiological Entomology. 40(2):103-112.
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Identification and evaluation of reliable reference genes for quantitative real-time PCR analysis in tea plant (Camellia sinensis (L.) O. Kuntze)
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Hao, X., Horvath, D.P., Chao, W.S., Yang, Y., Wang, X. and Xiao, B. 2014. Identification and evaluation of reliable reference genes for quantitative real-time PCR analysis in tea plant (Camellia sinensis (L.) O. Kuntze). International Journal of Molecular Sciences. 15:22155-22172. https://doi.org/10.3390/ijms151222155.
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DORMANCY ASSOCIATED MADS-BOX genes: a review
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Horvath, D.P. 2015. DORMANCY ASSOCIATED MADS-BOX genes: a review. In: Anderson, J.V., editor. Advances in Plant Dormancy. Cham, Switzerland. Springer International Publishing AG. pp.235-256.
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Meta-analysis identifies potential molecular markers for endodormancy in crown buds of leafy spurge
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Dogramaci, M., Horvath, D.P., Anderson, J.V. 2015. Meta-analysis identifies potential molecular markers for endodormancy in crown buds of leafy spurge; a herbaceous perennial. In: Anderson, J.V., editor. Advances in Plant Dormancy. Cham, Switzerland. Springer International Publishing AG. pp.197-219.
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Dormancy induction and release in buds and seeds
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Chao, W.S., Dogramaci, M., Horvath, D.P., Foley, M.E., Anderson, J.V. 2015. Dormancy induction and release in buds and seeds. In: Anderson, J.V., editor. Advances in Plant Dormancy. Cham, Switzerland. Springer International Publishing AG. pp.235-256.
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Leafy spurge genomics: A model to investigate development, stress responses, and invasiveness of a noxious weed
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Horvath, D., Anderson, J.V., Chao, W.S., Foley, M.E., Dogramaci, M. 2015. Leafy spurge genomics: A model to investigate development, stress responses, and invasiveness of a noxious weed. In: Sablok, G., Ueno, S., Varotto, C., Kumar, S., Kuo, J. editors. Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches. Switzerland: Springer International Publishing. p. 63-78. https://doi.org/10.1007/978-3-319-17157-9.
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Switchgrass (Panicum virgatum L) flag leaf transcriptomes reveal molecular signatures of leaf development, senescence, and mineral dynamics
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Dehydration-induced endodormancy in crown buds of leafy spurge highlights involvement of MAF3- and RVE1-like homologs, and hormone signaling cross-talk
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Dogramaci, M., Horvath, D.P., Anderson, J.V. 2014. Dehydration-induced endodormancy in crown buds of leafy spurge highlights involvement of MAF3- and RVE1-like homologs, and hormone signaling cross-talk. Plant Molecular Biology. 86(4):409-424. DOI: 10.1007/s11103-014-0237-2.
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The resemblance and disparity of gene expression in dormant and non-dormant seeds and crown buds of leafy spurge (Euphorbia esula)
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Chao, W.S., Dogramaci, M., Anderson, J.V., Foley, M.E., Horvath, D.P. 2014. The resemblance and disparity of gene expression in dormant and non-dormant seeds and crown buds of leafy spurge (Euphorbia esula). Biomed Central (BMC) Plant Biology. 14:216. https://doi.org/10.1186/s12870-014-0216-4.
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Does the conversion of grasslands to row crop production in semi-arid areas threaten global food supplies?
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Clay, D.E., Clay, S.A., Reitsma, K.D., Dunn, B.H., Smart, A.J., Carlson, G.G., Horvath, D.P., Stone, J.J. 2014. Does the conversion of grasslands to row crop production in semi-arid areas threaten global food supplies? Global Food Security Journal. 3:22-30. DOI: http://dx.doi.org/10.1016/j.gfs.2013.12.002.
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Microarray analysis of the semi-compatible pathogenic response and recovery of leafy spurge inoculated with the Cassava bacterial blight pathogen Xanthomonas axonopodis pv. manihotis
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Horvath, D.P., Santana, M.A., Anderson, J.V. 2013. Microarray analysis of the semi-compatible pathogenic response and recovery of leafy spurge inoculated with the Cassava bacterial blight pathogen Xanthomonas axonopodis pv. manihotis. Weed Science. 61:428-436.
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Landscape features impact on soil available water, corn biomass, and gene expression during the late vegetative stage
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Hansen, S., Clay, S.A., Clay, D.E., Carlson, C.G., Reicks, G., Jarachi, Y., Horvath, D.P. 2013. Landscape features impact on soil available water, corn biomass, and gene expression during the late vegetative stage. The Plant Genome. 6(2):1-9.
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BAC library development, and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula L.) identifies differential splicing and conserved promoter motifs
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Horvath, D.P., Kudrna, D., Talag, J., Anderson, J.V., Chao, W.S., Wing, R., Foley, M.E., Dogramaci, M. 2013. BAC library development, and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula L.) identifies differential splicing and conserved promoter motifs. Weed Science. 61(2):303-309.
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The transcriptomes of dormant leafy spurge seeds under alternating temperature are differentially affected by a germination-enhancing pretreatment
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Foley, M.E., Chao, W.S., Horvath, D.P., Dogramaci, M., Anderson, J.V. 2013. The transcriptomes of dormant leafy spurge seeds under alternating temperature are differentially affected by a germination-enhancing pretreatment. Journal of Plant Physiology. 170(6):539-547.
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Induction of DREB2A pathway with repression of E2F, Jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation specific freeze resistant wheat crown
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Karki, A., Horvath, D.P., Sutton, F. 2013. Induction of DREB2A pathway with repression of E2F, Jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation specific freeze resistant wheat crown. Functional and Integrative Genomics. 13:57-65.
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Phylogeny of Cirsium spp. in North America: host specificity does not follow phylogeny
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Bodo Slotta, T.A., Horvath, D.P., Foley, M.E. 2012. Phylogeny of Cirsium spp. in North America: host specificity does not follow phylogeny. PLANTS. 1:61-73.
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Selection and validation of endogenous reference genes for qRT-PCR
analysis in leafy spurge (Euphorbia esula)
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Chao, W.S., Dogramaci, M., Foley, M.E., Horvath, D.P., Anderson, J.V. 2012. Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula). PLoS One. 7(8):e42839.
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Transcriptome profiling of diapause and post-diapause quiescent alfalfa leafcutting bees
- (Abstract Only)
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Yocum, G.D., Rinehart, J.P., Horvath, D.P., Kemp, W.P. 2012. Transcriptome profiling of diapause and post-diapause quiescent alfalfa leafcutting bees. Meeting Abstract. Paper No. D0253.
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Invasion history of North American Canada thistle, Cirsium arvense
- (Peer Reviewed Journal)
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Guggisberg, A., Welk, E., Sforza, R., Horvath, D.P., Anderson, J.V., Foley, M.E., Rieseberg, L.H. 2012. Invasion history of North American Canada thistle, Cirsium arvense. Journal of Biogeography. 39/10:1919-1931. doi:10.1111/j.1365-2699.2012.02746.x.
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Molecular mechanisms responsive to dehydration may impact the invasiveness of perennial weeds under global climate change
- (Abstract Only)
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Auxin and ABA act as central regulators of developmental networks associated with paradormancy in Canada thistle (Cirsium arvense)
- (Peer Reviewed Journal)
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Anderson, J.V., Dogramaci, M., Horvath, D.P., Foley, M.E., Chao, W.S., Suttle, J.C., Thimmapuram, J., Hernandez, A.G., Ali, S., Mikel, M.A. 2012. Auxin and ABA act as central regulators of developmental networks associated with paradormancy in Canada thistle (Cirsium arvense). Functional and Integrative Genomics. 12(3):515-531.
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Invasion history of North American Canada thistle, Cirsium arvense
- (Peer Reviewed Journal)
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Guggisberg, A., Welk, E., Sforza, R., Horvath, D.P., Anderson, J.V., Foley, M.E., Rieseberg, L.H. 2012. Invasion history of North American Canada thistle, Cirsium arvense. Journal of Biogeography. 39:1919-1931.
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Invasions and impacts of alligatorweed in the upper Xiaoqing River basin of northern China
- (Peer Reviewed Journal)
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Liu, D., Hu, J.F., Horvath, D.P., Zhang, X.J., Bian, X.Y., Chang, G.L., Sun, X.H., Tian, J. 2012. Invasions and impacts of alligatorweed in the upper Xiaoqing River basin of northern China. Journal of Aquatic Plant Management. 50:19-24.
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The sprout inhibitor 1,4-dimethylnaphthalene induces the expression of the cell cycle inhibitors KRP1 and KRP2 in potatoes
- (Peer Reviewed Journal)
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Campbell, M.A., Gleichsner, A., Hilldorfer, L., Horvath, D.P., Suttle, J.C. 2012. The sprout inhibitor 1,4-dimethylnaphthalene induces the expression of the cell cycle inhibitors KRP1 and KRP2 in potatoes. Functional and Integrative Genomics. 12:533-541.
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Microarray and growth analyses identify differences and similarities of early corn response to weeds, shade, and nitrogen stress
- (Peer Reviewed Journal)
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Moriles, J., Hansen, S., Horvath, D.P., Reicks, G., Clay, D.E., Clay, S.A. 2012. Microarray and growth analyses identify differences and similarities of early corn response to weeds, shade, and nitrogen stress. Weed Science. 60(2):158-166.
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Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates ABA and flavonoid synthesis in weedy red rice
- (Peer Reviewed Journal)
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Gu, X.-Y., Foley, M.E., Horvath, D.P., Anderson, J.V., Feng, J., Zhang, L., Mowry, C.R., Ye, H., Suttle, J.C., Kadowaki, K., Chen, Z. 2011. Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice. Genetics. 189:1515-1524.
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Genomics of compositae weeds: EST libraries, microarrays, and evidence of introgression
- (Peer Reviewed Journal)
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Lai, Z., Kane, N.C., Kozik, A., Hodgins, K.A., Dlugosch, K.M., Barker, M.S., Matvienko, M., Yu, Q., Turner, K.G., Pearl, S.A., Bell, G.D.M., Zou, Y., Grassa, C., Guggisberg, A., Adams, K.L., Anderson, J.V., Horvath, D.P., Kesseli, R.V., Burke, J.M., Michelmore, R.W., Rieseberg, L.H. 2012. Genomics of compositae weeds: EST libraries, microarrays, and evidence of introgression. American Journal of Botany. 99(2):209-218.
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Alternating temperature breaks dormancy in leafy spurge seeds and impacts signaling networks associated with HY5
- (Peer Reviewed Journal)
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Chao, W.S., Foley, M.E., Dogramaci, M., Anderson, J.V., Horvath, D.P. 2011. Alternating temperature breaks dormancy in leafy spurge seeds and impacts signaling networks associated with HY5. Functional and Integrative Genomics. 11(4):637-649.
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Changes in the transcriptome of dry leafy spurge (Euphorbia esula) seeds imbibed at a constant and alternating temperature
- (Peer Reviewed Journal)
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Foley, M.E., Chao, W.S., Dogramaci, M., Horvath, D.P., Anderson, J.V. 2012. Changes in the transcriptome of dry leafy spurge (Euphorbia esula) seeds imbibed at a constant and alternating temperature. Weed Science. 60(1):48-56.
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Dehydration and vernalization treatments identify overlapping molecular networks impacting endodormancy maintenance in leafy spurge crown buds
- (Peer Reviewed Journal)
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Dogramaci, M., Horvath, D.P., Christoffers, M.J., Anderson, J.V. 2011. Dehydration and vernalization treatments identify overlapping molecular networks impacting endodormancy maintenance in leafy spurge crown buds. Functional and Integrative Genomics. 11(4):611-626.
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Early corn growth and development in response to weed, nitrogen, and shade stresses
- (Abstract Only)
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Moriles, J.C., Clay, S.A., Clay, D.E., Hansen, S.A., Horvath, D.P. 2011. Early corn growth and development in response to weed, nitrogen, and shade stresses. [abstract]. ASA, CSSA, SSSA International Annual Meeting, October 16-20, 2011, San Antonio, TX. 324-9.
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Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites
- (Peer Reviewed Journal)
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Bodo Slotta, T.A., Foley, M.E., Chao, S., Hufbauer, R., Horvath, D.P. 2010. Assessing genetic diversity of Canada thistle (Cirsium arvense) in North America with microsatellites. Weed Science. 58:387-394.
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Weeds Induce Permanent Changes in Expression of Photosynthetic Genes of Corn
- (Abstract Only)
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Horvath, D.P., Moriles, J., Hansen, S., Clay, S. 2010. Weeds Induce Permanent Changes in Expression of Photosynthetic Genes of Corn. American Society of Plant Biologists Annual Meeting, July 31-August 4, 2010, Montreal, Canada. Abs #P15010. http://abstracts.aspb.org/pb2010/public/P15/P15010.html.
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Extended Low Temperature Impacts Dormancy Status, Flowering Competence, and Transcript Profiles in Crown Buds of Leafy Spurge
- (Peer Reviewed Journal)
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Dogramaci, M., Horvath, D.P., Chao, W.S., Foley, M.E., Christoffers, M.J., Anderson, J.V. 2010. Low Temperature Impacts Dormancy Status, Flowering Competence, and Transcript Profiles in Crown Buds of Leafy Spurge. Plant Molecular Biology. 73:207-226. DOI:10.1007/s11103-010-9621-8.
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The Sprout Inhibitors Chlorpropham and 1,4-Dimethylnaphthalene Elicit Different Transcriptional Profiles and Do Not Suppress Growth Through a Prolongation of the Dormant State.
- (Peer Reviewed Journal)
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Campbell, M.A., Gleichnser, A., Alsbury, R., Horvath, D.P., Suttle, J.C. 2010. The Sprout Inhibitors Chlorpropham and 1,4-Dimethylnaphthalene Elicit Different Transcriptional Profiles and Do Not Suppress Growth Through a Prolongation of the Dormant State. Plant Molecular Biology. 73:181-189.
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Bud dormancy in perennial plants: a mechanism for survival. In:Dormancy of Cells and Organisms
- (Book / Chapter)
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Anderson, J.V., Horvath, D.P., Chao, W.S., Foley, M.E. (2010) Bud Dormancy in Perennial Plants: A Mechanism for Survival. In: Lubzens, E., Cerda, J. and Clark, M. (eds.), Dormancy and Resistance in Harsh Environments. Topics in Current Genetics 21, Chapter 5, Hohmann, S. (series ed.), Springer-Verlag, Berlin Heidelberg. pp 69-90. DOI:10.1007/978-3-642-12422-8_5.
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Characterization, Expression and Function of DORMANCY ASSOCIATED MADS-BOX Genes from Leafy Spurge
- (Peer Reviewed Journal)
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Horvath, D.P., Sung, S., Kim, D., Chao, W., Anderson, J. 2010. Characterization, Expression and Function of DORMANCY ASSOCIATED MADS-BOX Genes from Leafy Spurge. Plant Molecular Biology. 73:169-179. DOI:10.1007/s11103-009-9596-5.
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Initial Changes in the Transcriptome of Euphorbia esula Seeds Induced to Germinate with a Combination of Constant and Diurnal Alternating Temperatures
- (Peer Reviewed Journal)
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Foley, M.E., Anderson, J.V., Chao, W.S., Dogramaci, M., Horvath, D.P. 2010. Initial Changes in the Transcriptome of Euphorbia esula Seeds Induced to Germinate with a Combination of Constant and Diurnal Alternating Temperatures. Plant Molecular Biology. 73:131-142. DOI:10.1007/s11103-009-9569-8.
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Transcriptome Analysis of Corn in Competition with Canola or Grown in Shade or Low Nitrogen
- (Abstract Only)
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Hansen, S., Moriles, J., Horvath, D.P., Clay, S. 2010. Transcriptome Analysis of Corn in Competition with Canola or Grown in Shade or Low Nitrogen. Weed Science Society of America Meeting Abstracts. Presentation O(61): p.51.
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Bud Dormancy and Growth
- (Book / Chapter)
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Horvath, D.P. 2009. Bud Dormancy and Growth. In: Pua and Davey, Editors. Plant Developmental Biology - Biotechnological Perspectives. Vol. 1. Springer-Verlag Berlin Heidelberg. Chapter 4, pp. 53-70.
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Common Mechanisms Regulate Flowering and Dormancy
- (Peer Reviewed Journal)
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Horvath, D.P. 2009. Common Mechanisms Regulate Flowering and Dormancy. Plant Science. 177:523-531. DOI:10.1016/j.plantsci.2009.09.002.
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Genomics for Weed Science
- (Peer Reviewed Journal)
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Horvath, D.P. 2010. Genomics for Weed Science. Current Genomics. 11:47-51(5). DOI:10.2174/138920210790217972.
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Genomic and breeding resources of the Euphorbia
- (Book / Chapter)
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Horvath D.P., Wurdack, K., Pullin, K. 2011. Wild crop relatives: Genomic and breeding resources of Euphorbia. In: Plantation and Ornamental Crops. Chittaranjan K. (ed.) Springer Berlin Heidelberg. pp 125-132.
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The Effects of Temperature, Photoperiod, and Vernalization on Regrowth and Flowering Competence in Euphorbia Esula (Euphorbiaceae) Crown Buds
- (Peer Reviewed Journal)
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Foley, M.E., Anderson, J.V., Horvath, D.P. 2009. The Effects of Temperature, Photoperiod, and Vernalization on Regrowth and Flowering Competence in Euphorbia esula (Euphorbiaceae) Crown Buds. Botany. 87:986-992. DOI:10.1139/B09-055.
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Corn Response to Competition: Growth Alteration vs. Yield Limiting Factors
- (Peer Reviewed Journal)
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Clay, S.A., Clay, D.E., Horvath, D.P., Pullis, J., Carlson, C.G., Hansen, S., Reicks, G. 2009. Corn Response to Competition: Growth Alteration vs. Yield Limiting Factors. Agronomy Journal. 101:1522-1529. DOI:10.2134/agronj2008.0213x
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Evolution of Weediness and Invasiveness: Charting the Course for Weed Genomics
- (Peer Reviewed Journal)
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Stewart, N., Tranel, P.J., Horvath, D.P., Anderson, J.V., Rieseberg, L., Westwood, J.H., Mallory-Smith, C., Zapiola, M., Dlugosch, K.M. 2009. Evolution of Weediness and Invasiveness: Charting the Course for Weed Genomics. Weed Science. 57:451-462. DOI: 10.1614/WS-09-011.1.
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Cloning, Characterization, Regulation, and Function of Dormancy-Associated MADS-Box Genes from Leafy Spurge
- (Abstract Only)
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Horvath, D.P., Sung, S., Kim, D. 2009. Cloning, Characterization, Regulation, and Function of Dormancy-Associated MADS-Box Genes from Leafy Spurge. 4th International Symposium on Plant Dormancy Program and Abstract Book. Page 18.
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Transcriptome Profiles Associated with Dormancy Status in Seeds of Leafy Spurge (Euphorbia esula)
- (Abstract Only)
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Foley, M.E., Anderson, J.V., Horvath, D.P., Chao, W.S. 2009. Transcriptome Profiles Associated with Dormancy Status in Seeds of Leafy Spurge (Euphorbia esula). 4th International Symposium on Plant Dormancy Program and Abstracts Book. Page 29.
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Seed Dormancy of Rice: From Natural Variation to Underlying Genes
- (Abstract Only)
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Gu, X., Ye, H., Liu, T., Anderson, J.V., Horvath, D.P., Suttle, J.C., Foley, M.E. 2009. Seed Dormancy of Rice: From Natural Variation to Underlying Genes. 4th International Symposium on Plant Dormancy Program and Abstract Book. Page 35.
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|
Genomic and Breeding Resources of the Euphorbia
- (Book / Chapter)
|
Chao, W.S., Horvath, D.P. Model Weeds for Genomics. In: Stewart, N., Editor. Weedy and Invasive Plant Genomics. 1st Edition. Ames, IA. Wiley-Blackwell. p. 33-52.
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|
Leafy Spurge: An Emerging Model to Study Traits of Perennial Weeds
- (Book / Chapter)
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Horvath, D.P., Anderson, J.V. 2009. Leafy Spurge: An Emerging Model to Study Traits of Perennial Weeds. In: Stewart, N., Editor. Weedy and Invasive Plant Genomics. 1st Edition. Ames, IA. Wiley-Blackwell. p. 113-126.
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|
Cloning, characterization, regulation, and function of dormancy-associated MADS-BOX genes from leafy spurge
- (Abstract Only)
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Horvath, D.P., Anderson, J.V., Chao, W.S. 2009. Cloning, Characterization, Regulation, and Function of Dormancy-associated MADS-BOX Genes from Leafy Spurge [Abstract]. Weed Science Society of America Meeting Abstracts. Presentation #276.
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|
Dehydration-stress affects vegetative reproduction and transcriptome profiles in underground adventitious buds of leafy spurge (Euphorbia esula)
- (Abstract Only)
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Dogramaci, M., Horvath, D.P., Christoffers, M., Anderson, J.V. 2009. Dehydration-stress affects vegetative reproduction and transcriptome profiles in underground adventitious buds of leafy spurge (Euphorbia esula). [Abstract] Weed Science Society of America Meeting Abstracts. #45.
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|
Early growth and devlopment response to corn to canola competition and shade stress
- (Abstract Only)
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Moriles, J.C., Clay, S.A., Clay, D.E., Horvath, D.P., Hansen, S. 2009. Early Growth and Devlopment Response to Corn to Canola Competition and Shade Stress [Abstract]. Weed Science Society of America Meeting Abstracts. #47.
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|
The effects of temperature, photoperiod, and vernalization on endodormancy and flowering of leafy spurge
- (Abstract Only)
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Foley, M.E., Anderson, J.V., Horvath, D.P. 2009. The Effects of Temperature, photoperiod, and Vernalization on Endodormancy and Flowering of Leafy Spurge [Abstract]. Weed Science Society of America Meeting Abstracts. #46.
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|
Molecular Biology and Genomics: New Tools for Weed Science
- (Peer Reviewed Journal)
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Tranel, P.J., Horvath, D.P. 2009. Molecular Biology and Genomics: New Tools for Weed Science. Bioscience. 59:207-215.
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|
Cloning, Characterization, Regulation, and Function of DORMANCY-ASSOCIATED MADS-BOX Genes from Leafy Spurge
- (Abstract Only)
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Horvath, D.P., Chao, W.S., Anderson, J.V. 2009. Cloning, Characterization, Regulation, and Function of DORMANCY-ASSOCIATED MADS-BOX Genes from Leafy Spurge [Abstract]. Plant and Animal Genome Conference. P720.
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|
Transcriptome Alterations Resulting From Infection And Recovery Of Leafy Spurge To Cassava Bacterial Blight (Xanthomonas axonopodis pv. Manihotis)
- (Abstract Only)
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Horvath, D.P., Santana, M. 2009. Transcriptome Alterations Resulting from Infection and Recovery of Leafy Spurge to Cassava Bacterial Blight (Xanthomonas axonopodis pv. Manihotis)[Abstract]. Plant and Animal Genome XVII Conference. W508.
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|
Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.)
- (Peer Reviewed Journal)
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Horvath, D.P., Chao, W.S., Suttle, J.C., Anderson, J.V., Thimmapuram, J. 2008. Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.). Biomed Central (BMC) Genomics. 9:536. DOI:10.1186/1471-2164-9-536.
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|
Cloning and characterization of a critical meristem developmental gene (EeSTM) from leafy spurge (Euphorbia esula)
- (Review Article)
|
Varanasi, V., Slotta, T., Horvath, D.P. 2008. Cloning and characterization of a critical meristem developmental gene (EeSTM) from leafy spurge (Euphorbia esula). Weed Science. 56:490-495. DOI:10.1614/WS-07-192.1.
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|
qSD7-1 is the first dormancy QTL cloned from weedy rice
- (Abstract Only)
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Gu, X., Foley, M.E., Anderson, J.V., Horvath, D.P. 2008. qSD7-1 is the first dormancy QTL cloned from weedy rice. Meeting Proceedings. Polish Journal of Natural Sciences. PLN ISSN 1731-3147 (Supplement 5/2008). Page 51.
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|
A branch-inducing phytoplasma in Euphorbia pulcherrima associated with changes in expression of host genes
- (Peer Reviewed Journal)
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Nicolaisen, M., Horvath, D.P. 2008. A branch-inducing phytoplasma in Euphorbia pulcherrima associated with changes in expression of host genes. Journal of Phytopathology. 156:403-407. DOI:10.1111/j.1439-0434.2007.01372.x.
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|
Seed Dormancy in Weedy Rice (Oryza sativa L.)
- (Abstract Only)
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Gu, X., Foley, M.E., Suttle, J.C., Anderson, J.V., Horvath, D.P., Kianian, S.F. Seed Dormancy in Weedy Rice (Oryza sativa L.). Meeting Abstract. National Wheat Genomics Conference Abstracts. Page 24, P10.
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|
qSD7-1 is the first dormancy QTL cloned from weedy rice (Oryza sativa)
- (Abstract Only)
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Foley, M.E., Gu, X., Anderson, J.V., Horvath, D.P. 2008. qSD7-1 is the first dormancy QTL cloned from weedy rice (Oryza sativa). Meeting Abstract. Weed Science Society of America Meeting Abstracts. Presentation 188.
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|
Changes in well-defined phases of bud dormancy associated with shifts in carbohydrate metabolism may involve beta-amylases
- (Abstract Only)
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Chao, W.S., Anderson, J.V., Horvath, D.P. 2008. Changes in well-defined phases of bud dormancy associated with shifts in carbohydrate metabolism may involve beta-amylases. Meeting Abstract. Weed Science Society of America Meeting Abstracts. Presentation 63.
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|
Genomics approach to investigate seasonal dormancy transitions in leafy spurge (Euphorbia esula)
- (Abstract Only)
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Chao, W.S., Horvath, D.P., Anderson, J.V., Foley, M.E. 2008. Genomics approach to investigate seasonal dormancy transitions in leafy spurge (Euphorbia esula). Plant and Animal Genome Conference. W77: Bud Dormancy.
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|
Positional cloning of a seed dormancy QTL from weedy rice (Oryza sativa)
- (Abstract Only)
|
Foley, M.E., Gu, X., Anderson, J.V., Horvath, D.P. 2008. Positional cloning of a seed dormancy QTL from weedy rice (Oryza sativa). Plant and Animal Genome VX Conference Abstracts. W508: Weedy and Invasive Plant Genomics. p.115.
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|
Seed Dormancy in Weedy Rice (Oryza sativa L.)
- (Abstract Only)
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Foley, M.E., Gu, X., Anderson, J.V., Horvath, D.P. Seed Dormancy in Weedy Rice (Oryza sativa L.). Symposium Proceedings. International Symposium on Pre-harvest Sprouting in Cereals, Mendoza, AR, November 5-9, 2007, P.20. Available: http://www.agro.uba.ar/epg/sprout2007/summary-PHS.pdf.
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Positional Cloning of qSD7-1, a Dormancy Locus Associated with Red Pericarp Color in Weedy Rice
- (Abstract Only)
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Gu, X., Foley, M.E., Horvath, D.P., Anderson, J.V. 2007. Positional cloning of qSD7-1, a dormancy locus associated with red pericarp color in weedy rice. [Abstract]. Plant Biology & Botany 2007 Program & Abstract Book. P29016. p. 182.
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Changes in well-defined phases of bud dormancy may involve shifts in carbohydrate metabolism
- (Abstract Only)
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Chao, W.S., Anderson, J.V., Horvath, D.P. 2007. Changes in well-defined phases of bud dormancy may involve shifts in carbohydrate metabolism. [Abstract]. Plant Biology & Botany 2007 Program & Abstract Book. P26013. p.150.
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|
Heterologous hybridization of cotton (Gossypium hirsutum)microarrays with Velvetleaf (Abutilon theophrasti) reveals physiological responses due to corn competition
- (Peer Reviewed Journal)
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Horvath, D.P., Llewellyn, D., Clay, S.A. 2007. Heterologous hybridization of cotton (Gossypium hirsutum)microarrays with Velvetleaf (Abutilon theophrasti) reveals physiological responses due to corn competition. Weed Science. 55:546-557. DOI:10.1614/WS-07-008.1.
|
|
Characterization of an 18,166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes
- (Peer Reviewed Journal)
|
Lokko, Y., Anderson, J.V., Rudd, S.A., Raji, A.A., Horvath, D.P., Mikel, M.A., Kim, R.W., Liu, L., Hernandez, A.G., Dixon, A.G., Ingelbrecht, I.L. 2007. Characterization of an 18,166 EST dataset for cassava (Manihot esculenta Crantz) enriched for drought-responsive genes. Plant Cell Reports. 26:1605-1618. DOI:10.1007/s00299-007-0378-8.
|
|
Signals regulating dormancy in vegetative buds
- (Peer Reviewed Journal)
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Chao, W.S., Foley, M.E., Horvath, D.P., Anderson, J.V. 2007. Signals regulating dormancy in vegetative buds. International Journal of Plant Developmental Biology. 1(1):49-56.
|
|
Current review on signals regulating dormancy in vegetative buds
- (Abstract Only)
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Chao, W.S., Horvath, D.P., Foley, M.E., Anderson, J.V. 2007. Current review on signals regulating dormancy in vegetative buds. International Journal of Plant Developmental Biology. 1(1):49-56
|
|
Association of seed dormancy with red pericarp color in weedy rice arises from pleiotropy of a predicted transcription factor
- (Abstract Only)
|
Xu, X.Y., Foley, M.E., Anderson, J.V., Suttle, J.C., Horvath, D.P., Kianian, S.F. 2007. Association of seed dormancy with red pericarp color in weedy rice arises from pleiotropy of predicted transcription factor. [Meeting Abstract.] 2007 National Wheat Genomics Conference. Abstract No. 10.
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|
Characterization of an EST database for the perennial weed leafy spurge: an important resource for weed biology research
- (Peer Reviewed Journal)
|
Anderson, J.V., Horvath, D.P., Chao, W.S., Foley, M.E., Hernandez, A.G., Thimmapuram, J., Lei, L., Gong, G.L., Band, M., Kim, R., Mikel, M.A. 2007. Characterization of an EST database for the perennial weed leafy spurge: an important resource for weed biology research. Weed Science. 55:193-203. DOI:10.1614/WS-06-138.1.
|
|
Development and characterization of genomics resources for leafy spurge: A model perennial weed for functional genomics studies
- (Abstract Only)
|
Anderson, J.V., Horvath, D.P., Chao, W.S., Foley, M.E. 2007. Development and characterization of genomics resources for leafy spurge: A model perennial weed for functional genomics studies. [Abstract]Plant and Animal Genome Conference. W433.
|
|
GENETIC DIVERSITY OF CANADA THISTLE (CIRSIUM ARVENSE) IN NORTH DAKOTA
- (Peer Reviewed Journal)
|
Bodo Slotta, T.A., Rothhouse, J.M., Horvath, D.P. Foley, M.E. 2006. Genetic diversity of Canada thistle (Cirsium arvense)in North Dakota. Weed Science. 54:1080-1085.
|
|
MICROARRAY ANALYSIS OF LATE SEASON VELVETLEAF (ABUTILON THEOPHRASTI) IMPACT ON CORN
- (Peer Reviewed Journal)
|
Horvath, D.P., Gulden, R., Clay, S.A. 2006. Microarray analysis of late- season velvetleaf (Abutilon theophrasti) effect on corn. Weed Science. 54:983-994.
|
|
TRANSCRIPTOME ANALYSIS OF LEAFY SPURGE (EUPHORBIA ESULA L.) CROWN BUDS DURING SHIFTS IN WELL-DEFINED PHASES OF DORMANCY
- (Peer Reviewed Journal)
|
Horvath, D.P., Anderson, J.V., Soto-Suarez, M., Chao, W.S. 2006. Transcriptome analysis of leafy spurge (Euphorbia esula) crown buds during shifts in well-defined phases of dormancy. Weed Science. 54:821-827.
|
|
SUBTRACTIVE CDNA LIBRARIES IDENTIFY DIFFERENTIALLY EXPRESSED GENES IN DORMANT AND GROWING BUDS OF LEAFY SPURGE (EUPHORBIA ESULA)
- (Peer Reviewed Journal)
|
Jia, Y., Anderson, J.V., Horvath, D.P., Gu, Y.-Q., Lym, R.G., Chao, W.S. 2006. Subtractive cDNA libraries identify differentially expressed genes in dormant and growing buds of leafy spurge (Euphorbia esula). Plant Molecular Biology. 61:329-344.
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|
LEAFY SPURGE: DEVELOPMENT AND USE OF A MODEL PLANT FOR GENOMIC ANALYSIS OF BUD DORMANCY
- (Abstract Only)
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Horvath, D.P., Anderson, J.V. 2006. Leafy spurge: Development and use of a model plant for genomic analysis of bud dormancy. [Abstract]. Plant & Animal Genome XIV Conference. p. 96.
|
|
MICROARRAY ANALYSIS IDENTIFIES GENES INVOLVED IN CROWN BUD DORMANCY IN LEAFY SPURGE (EUPHORBIA ESULA L.)
- (Abstract Only)
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Horvath, D.P., Anderson, J.V., Chao, W.S. Microarray analysis identifies genes involved in crown bud dormancy in leafy spurge (Euphorbia esula L.). [Abstract]. Weed Science Society of America Abstracts 46:92.
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|
ESTIMATING GENETIC DIVERSITY OF CANADA THISTLE WITHIN NORTH DAKOTA
- (Abstract Only)
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Slotta, T.A., Rothhouse, J., Horvath, D.P., Foley, M.E. 2006. Estimating genetic diversity of Canada thistle within North Dakota. [Abstract]. Weed Science Society of America Abstracts 46:30.
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RELATIONSHIPS OF WEEDY AND NATIVE THISTLES (CIRSIUM) IN THE NORTHERN GREAT PLAINS
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Slotta, T.A., Horvath, D.P., Foley, M.E. 2006. Relationships of weedy and native thistles (Cirsium) in the Northern Great Plains. [Abstract]. Weed Science Society of America Abstracts 46:33.
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MICROARRAY ANALYSIS IDENTIFIES GENES INVOLVED IN CROWN BUD DORMANCY IN LEAFY SPURGE (EUPHORBIA ESULA L.)
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Horvath, D.P., Anderson, J.V., Chao, W.S. 2006. Microarray analysis identifies genes involved in crown bud dormancy in leafy spurge (Euphorbia esula L.). [Abstract]. Weed Science Society of America Abstracts 46:92.
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SUBTRACTIVE CDNA LIBRARIES IDENTIFY DIFFERENTIALLY-EXPRESSED GENES IN DORMANT AND GROWING BUDS OF LEAFY SPURGE (EUPHORBIA ESULA)
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Jia, Y., Anderson, J.V., Horvath, D.P., Gu, Y.Q., Lym, R.G., Chao, W.S. 2006. Subtractive cDNA libraries identify differentially-expressed genes in dormant and growing buds of leafy spurge (Euphorbia esula). [Abstract]. Weed Science Society of America Abstracts 46:30.
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CARBOHYDRATES AFFECT DORMANCY AND GROWTH IN UNDERGROUND BUDS OF LEAFY SPURGE
- (Trade Journal)
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Chao, W.S., Anderson, J.V., Horvath, D.P. 2005. Carbohydrates affect dormancy and growth in underground buds of leafy spurge. Leafy Spurge News. XXVII(1):9.
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SUGARS, HORMONES, AND ENVIRONMENT AFFECT THE DORMANCY STATUS IN UNDERGROUND ADVENTITIOUS BUDS OF LEAFY SPURGE (EUPHORBIA ESULA)
- (Peer Reviewed Journal)
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Chao, W.S., Serpe, M.D., Anderson, J.V., Gesch, R.W., Horvath, D.P. 2006. Sugars, hormones, and environment affect the dormancy status in underground adventitious buds of leafy spurge (Euphorbia esula). Weed Science. 54(1):59-68.
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TRANSCRIPTOME ANALYSIS OF PARADORMANCY RELEASE IN ROOT BUDS OF LEAFY SPURGE (EUPHORBIA ESULA L.)
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Horvath, D.P., Soto-Suárez, M., Chao, W.S., Jia, Y., Anderson, J.V. 2005. Transcriptome analysis of paradormancy release in root buds of leafy spurge (Euphorbia esula). Weed Science. 53(6):795-801.
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IDENTIFICATION OF DIFFERENTIALLY-EXPRESSED GENES IN DORMANT AND GROWING BUDS OF LEAFY SPURGE (EUPHORBIA ESULA L.)
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Jia, Y., Gu, Y.Q., Horvath, D.P., Anderson, J.V., Chao, W.S. 2005. Identification of differentially-expressed genes in dormant and growing buds of leafy spurge (Euphorbia esula L.). [Abstract]. Annual Meeting of the American Society of Plant Biologists. Final Program and Abstract Supplement, Poster 670, Page 225.
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HOMOLOGY OF MICROSATELLITE AND ISSR MARKERS IN CIRSIUM (ASTERACEAE)
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Slotta, T.A., Foley, M.E., Horvath, D.P. 2005. Homology of microsatellite and ISSR markers in Cirsium (Asteraceae). [Abstract]. Society of Systematic Biologists Meeting.
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SEASONAL SHIFTS IN DORMANCY STATUS, CARBOHYDRATE METABOLISM, AND RELATED GENE EXPRESSION IN CROWN BUDS OF LEAFY SPURGE.
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Anderson, J.V., Gesch, R.W., Jia, Y., Chao, W.S., Horvath, D.P. 2005. Seasonal shifts in dormancy status, carbohydrate metabolism, and related gene expression in crown buds of leafy spurge. Plant, Cell and Environment. 28(12):1567-1578.
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DEVELOPMENT OF POLYMORPHIC MARKERS FOR CIRSIUM ARVENSE, CANADA THISTLE, AND THEIR AMPLIFICATION IN CLOSELY RELATED TAXA
- (Peer Reviewed Journal)
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Boda Slotta, T.A., Foley, M.E., Horvath, D.P. 2005. Development of polymorphic markers for Cirsium arvense, Canada thistle, and their amplification in closely related taxa. Molecular Ecology Notes. (5)917-919. DOI:10.1111/j.1471-8286.2005.01112.x.
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POTENTIAL MODEL WEEDS TO STUDY GENOMICS, ECOLOGY, AND PHYSIOLOGY IN THE 21ST CENTURY
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Chao, W.S., Horvath, D.P., Anderson, J.V., Foley, M.E. 2005. Potential model weeds to study genomics, ecology, and physiology in the 21st century. Weed Science. 53(6):929-937.
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CLONING AND EXPRESSION OF KRP GENES FROM ADVENTITIOUS BUDS OF THE PERENNIAL WEED LEAFY SPURGE.
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Sonju, R., Horvath, D.P. 2005. Cloning and expression of KRP genes from adventitious buds of the perennial weed leafy spurge. [Abstract]. Midwestern Society of the American Society of Plant Biology.
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CLONING AND EXPRESSION OF SHOOTMERISTEMLESS FROM ADVENTITIOUS BUDS OF THE PERENNIAL WEED LEAFY SPURGE.
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Varanasi, V., Horvath, D.P. 2005. Cloning and expression of shootmeristemless from adventitious buds of the perennial weed leafy spurge. [Abstract]. Midwestern Society of the American Society of Plant Biology. Page No. 22.
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GENETIC VARIABILITY FOR BIOLOGICAL CONTROL OF CANADA THISTLE
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Slotta, T.A., Horvath, D.P., Foley, M.E. 2005. Genetic variability for biological control of Canada thistle. [Abstract]. Invasive Species Workshop. Page No. 47.
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FUNDAMENTAL RESEARCH IN THE FIGHT AGAINST LEAFY SPURGE – BUD DORMANCY AND GROWTH
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Chao, W.S., Anderson, J.V., Horvath, D.P., Foley, M.E. 2005. Fundamental research in the fight against leafy spurge – bud dormancy and growth. [Abstract]. Invasive Species Workshop. Page No. 35.
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CLONING, CHARACTERIZATION, AND EXPRESSION OF GROWTH REGULATOR CYCLIN D3-2 IN LEAFY SPURGE (EUPHORBIA ESULA)
- (Peer Reviewed Journal)
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Horvath, D.P., Anderson, J.V., Jia, Y., Chao, W.S. 2005. Cloning,characterization, and expression of growth regulator CYCLIN D3-2 in leafy spurge (Euphorbia esula). Weed Science. 53:431-437.
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ENVIRONMENTALLY-INDUCED SHIFTS IN SUGAR METABOLISM MAY AFFECT DORMANCY STATUS IN UNDERGROUND ADVENTITIOUS BUDS OF LEAFY SPURGE (EUPHORBIA ESULA).
- (Abstract Only)
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Anderson, J.V., Chao, W.S., Horvath, D.P., Jia, Y., Gesch, R.W. 2005. Environmentally-induced shifts in sugar metabolism may affect dormancy status in underground adventitious buds of leafy spurge (Euphorbia esula) [Abstract]. Weed Science Society of America. Page No. 121.
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UNDERSTANDING SHOOT DEVELOPMENT AND GROWTH IN WEEDS: CLONING AND EXPRESSION OF SHOOTMERISTEMLESS FROM LEAFY SPURGE.
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Varanasi, V., Jia, Y., Chao, W.S., Anderson, J.V., Horvath, D.P. 2005. Understanding shoot development and growth in weeds: cloning and expression of shootmeristemless from leafy spurge. [Abstract]. Weed Science Society of America. Page No. 68.
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SURVEY OF GENETIC MARKERS IN ASSESSING VARIATION IN CANADA THISTLE OF THE NORTHERN GREAT PLAINS.
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Slotta, T.A., Horvath, D.P., Foley, M.E. 2005. Survey of genetic markers in assessing variation in Canada thistle of the Northern Great Plains.[Abstract]. Meeting of the Weed Science Society of America. Page No. 48.
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SUBTRACTIVE HYBRIDIZATION AS A TOOL TO SCREEN FOR GENES INVOLVED IN DORMANCY AND GROWTH IN UNDERGROUND ADVENTITIOUS BUDS OF LEAFY SPURGE (EUPHORBIA ESULA)
- (Abstract Only)
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Jia, Y., Gu, Y., Horvath, D.P., Anderson, J.V., Chao, W.S. 2005. Subtractive hybridization as a tool to screen for genes involved in dormancy and growth in underground adventitious buds of leafy spurge (Euphorbia esula). [Abstract]. Weed Science Society of America. Page No. 120.
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EXPRESSION AND REGULATION OF CELL CYCLE GENES IN UNDERGROUND ADVENTITIOUS BUDS OF LEAFY SPURGE (EUPHORBIA ESULA L.)
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Chao, W.S., Anderson, J.V., Horvath, D.P., Shelver, W.L., Foley, M.E. 2004.Expression and regulation of cell cycle genes in underground adventitious buds of leafy spurge (Euphorbia esula L.) [Abstract]. Weed Science Society of America Annual Meeting.
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MICROARRAY ANALYSIS OF DORMANCY BREAKING IN UNDERGROUND BUDS OF LEAFY SPURGE (EUPHORBIA ESULA)
- (Abstract Only)
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Horvath, D.P., Anderson, J.V. 2005. Microarray analysis of dormancy breaking in underground buds of leafy spurge (Euphorbia esula).[Abstract]. Weed Science Society of America. Page No. 67.
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LEAFY SPURGE: A MODEL PLANT FOR GENOMIC ANALYSIS OF BUD DORMANCY AND INSECT/HERBICIDE RESISTANCE
- (Abstract Only)
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Horvath, D.P., Anderson, J.V., Chao, W.S. 2005. Leafy spurge: a model plant for genomic analysis of bud dormancy and insect/herbicide resistance. [Abstract]. Weed Science Society of America. Page No. 117.
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THE SECRETS OF WEED GROWTH AND DEVELOPMENT: NEW GENOMIC BASED TOOLS TO ILLUMINATE THE MECHANISMS.
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Horvath, D.P., Anderson, J.V., Sonju, R., Jia, Y., Chao, W.S. 2005. The secrets of weed growth and development: new genomic based tools to illuminate the mechanisms. [Abstract]. Weed Science Society of America. Page No. 66.
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AT1G36390 IS HIGHLY CONSERVED, AND MAY PLAY A ROLE IN SHOOT DEVELOPMENT
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Horvath, D.P., Chao, W.S. 2004. At1g36390 is highly conserved, and may play a role in shoot development [Abstract]. 15th International Conference on Arabidopsis Research. Page No. T02-047.
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AN EST RESOURCE FOR CASSAVA AND OTHER SPECIES OF EUPHORBIACEAE
- (Peer Reviewed Journal)
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Anderson, J.V., Delseny, M., Fregene, M.A., Jorge, V., Mba, C., Lopez, C., Restrepo, S., Soto, M., Piegu, B., Verdier, V., Cooke, R., Tohme, J., Horvath, D.P. 2004. An EST resource for cassava and other species of Euphorbiaceae. Plant Molecular Biology. 56:527-539.
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A COMPREHENSIVE REVIEW OF DORMANCY STATUS IN LEAFY SPURGE CROWN BUDS IN RESPONSE TO REAL WORLD ENVIRONMENTAL AND PHYSIOLOGICAL CUES
- (Abstract Only)
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Anderson, J.V., Gesch, R.W., Chao, W.S., Horvath, D.P. 2004. A comprehensive review of dormancy status in leafy spurge crown buds in response to real world environmental and physiological cues. [Abstract]. 3rd International Symposium on Plant Dormancy. P. 5.
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KNOWING WHEN TO GROW: SIGNAL TRANSDUCTION PROCESSES REGULATING DORMANCY IN VEGETATIVE BUDS.
- (Peer Reviewed Journal)
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Horvath, D.P., Anderson, J.V., Chao, W.S., Foley, M.E. 2003. Knowing when to grow: signal transduction processes regulating dormancy in vegetative buds. Trends in Plant Science. 8:534-540.
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URG1, A CONSERVED AND PREVIOUSLY UNCHARACTERISED GENE EXPRESSED PREFERENTIALLY IN GROWING SHOOTS OF ARABIDOPSIS AND LEAFY SPURGE
- (Peer Reviewed Journal)
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Horvath, D.P., Schaffer, R. 2003. Urg1, a conserved and previously uncharacterised gene expressed preferentially in growing shoots of arabidopsis and leafy spurge. Applied Genomics and Proteomics. 2(3):169-179.
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EFFECTS OF PHOTOPERIOD ON WHOLE-PLANT CARBOHYDRATE PARTITIONING, CROWN BUD DEVELOPMENT, AND GENE EXPRESSION IN LEAFY SPURGE (EUPHORBIA ESULA, L.)
- (Abstract Only)
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Anderson, J.V., Gesch, R.W., Horvath, D.P. 2003. Effects of photoperiod on whole-plant carbohydrate partitioning, crown bud development, and gene expression in leafy spurge (Euphorbia esula L.) [abstract]. American Society of Plant Biologists Annual Meeting. Final Program and Abstract Supplement. p. 95.
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ARABIDOPSIS MICROARRAYS IDENTIFY CONSERVED AND DIFFERENTIALLY EXPRESSED GENES INVOLVED IN SHOOT GROWTH AND DEVELOPMENT FROM DISTANTLY RELATED PLANT SPECIES
- (Peer Reviewed Journal)
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Horvath, D.P., Schaffer, R., West, M., Wisman, E. 2003. Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. Plant Journal. 34:125-134.
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IDENTIFICATION OF GENES INDUCED IN EMERGING TILLERS OF WILD OAT USING ARABIDOPSIS MICROARRAYS
- (Peer Reviewed Journal)
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Horvath, D.P., Schaffer, R., Wisman, E. 2003. Identification of genes induced in emerging tillers of wild oat (Avena fatua) using Arabidopsis microarrays. Weed Science. 51:503-508.
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MOLECULAR ANALYSIS OF SIGNALS CONTROLLING DORMANCY AND GROWTH IN UNDERGROUND ADVENTITIOUS BUDS OF LEAFY SPURGE
- (Peer Reviewed Journal)
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Horvath, D.P., Chao, W.S., Anderson, J.V. 2002. Molecular analysis of signals controlling dormancy and growth in underground adventitious buds of leafy spurge. Plant Physiology. 128:1439-1446.
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A MOLECULAR APPROACH TO UNDERSTANDING ROOT BUD DORMANCY IN LEAFY SPURGE
- (Peer Reviewed Journal)
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Horvath, D.P., Anderson, J.V. 2002. A molecular approach to understanding root bud dormancy in leafy spurge. Weed Science. 50(2):227-231.
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RANDOM SEQUENCING OF CDNAS AND IDENTIFICATION OF MRNAS
- (Peer Reviewed Journal)
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Anderson, J.V., Horvath, D.P. 2001. Random sequencing of cDNAs and identification of mRNAs. Weed Science. 49:590-597.
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A CURRENT REVIEW ON THE REGULATION OF DORMANCY IN VEGETATIVE BUDS
- (Peer Reviewed Journal)
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Anderson, J.V., Chao, W.S., Horvath, D.P. 2001. A current review on the regulation of dormancy in vegetative buds. Weed Science. 49:581-589.
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A MOST TROUBLESOME WEED: WHAT HAS BEEN DONE, WHAT ELSE CAN WE DO?
- (Abstract Only)
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Foley, M.E., Anderson, J.V., Chao, W.S., Horvath, D.P. 2001. A most troublesome weed: what has been done, what else can we do?. [Abstract]. Leafy Spurge Symposium Proceedings. TEAM Leafy Spurge Spurgefest Symposium. Medora, ND. p.29.
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BELIEVE IT OR NOT
- (Other)
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Horvath, D.P. 2001. Believe it or not. Leafy Spurge News. 23(1):6.
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ISOLATION OF A CDNA CLONE (ACCESSION # AF220527) ENCODING A LIGHT-HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN (LHCB1) IN UNDERGROUND ADVENTITIOUS BUDS OF LEAFY SPURGE (EUPHORBIA ESULA L.)
- (Peer Reviewed Journal)
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Anderson, J.V., Horvath, D.P. 2000. Isolation of a cDNA Clone (Accession # AF220527)Encoding a Light-harvesting Chlorophyll a/b-binding Protein (Lhcb1) in Underground Adventitious Buds of Leafy Spurge(Euphorbia esula L.). PGR00-052)Plant Gene Register. 122:1457.
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THE EFFECT OF PHOTOSYNTHESIS ON UNDERGROUND ADVENTITIOUS SHOOT BUD DORMANCY/QUIESCENCE IN LEAFY SPURGE (EUPHORBIA ESULA L.)
- (Proceedings)
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Horvath, D.P., Anderson, J.V. 2000. The effect of photosynthesis on underground adventitious shoot bud dormancy/quiescence in leafy spurge (Euphorbia esula). 2nd International Symposium on Plant Dormancy: Short Communications. J-D Viemont and J.J. Crabbe eds., Presses de l'University d'Angers, 30-34.n ISBN: 2-903075-81-6. (Invited Book Chapter).
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ROLE OF MATURE LEAVES IN INHIBITION OF ROOT BUD GROWTH IN LEAFY SPURGE (EUPHORBIA ESULA L.)
- (Peer Reviewed Journal)
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"KNOW THINE ENEMY"-UNDERSTANDING WEED MANAGEMENT THROUGH BIOLOGICAL RESEARCH
- (Abstract Only)
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Anderson, J.V., Davis, D.G., Foley, M.E., Horvath, D.P. 1999. "know thine enemy"-understanding weed management through biological research. Leafy Spurge Symposium Proceedings.
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THE ROLE OF SPECIFIC PLANT ORGANS AND POLAR AUXIN TRANSPORT IN CORRELATIVE INHIBITION 0F LEAFY SPURGE (EUPHORBIA ESULA) ROOT BUDS
- (Peer Reviewed Journal)
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CLONING AND CHARACTERIZATION OF COLD-REGULATED GLYCINE-RICH RNA-BINDING PROTEIN GENES FROM LEAFY SPURGE (EUPHORBIA ESULA L.) AND COMPARISON TO HETEROLOGOUS GENOMIC CLONES
- (Peer Reviewed Journal)
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CLONING BY DIFFERENTIAL DISPLAY OF AN INTRON-ENCODED MATURASE-LIKE GENE (ACCESSION NO. AF037452) FROM LEAFY SPURGE (EUPHORBIA ESULA)
- (Peer Reviewed Journal)
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ARS News Articles
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