John Brooks
(PhD)
Crop Science Research Laboratory
Acting Director
Phone: (662) 320-7511
Fax:
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
(Clicking on the reprint icon
will take you to the publication reprint.)
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Revealing an abundance of microbial fecal contamination and multidrug resistant bacteria in the Mississippi Gulf Coast
- (Peer Reviewed Journal)
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Mukherjee, M., Cuthbert, R., Aitken, E., Gay, K., McKinney, K., Brooks, J.P. 2023. Revealing an abundance of microbial fecal contamination and multidrug resistant bacteria in the Mississippi Gulf Coast. Water. 15(13):2339. https://doi.org/10.3390/w15132339
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Soil health assessment for different tillage and cropping systems to determine sustainable mangement practices in a humid region
- (Peer Reviewed Journal)
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Chang, T., Feng, G.G., Adeli, A., Brooks, J.P., Jenkins, J.N. 2023. Soil health assessment for different tillage and cropping systems to determine sustainable mangement practices in a humid region. Soil & Tillage Research. 233:1-14. https://doi.org/10.1016/j.still.2023.105796.
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Balancing trade-offs in climate smart-agriculture: will selling carbon credits offset potential losses in the net yield income of small-scale soybean (Glycine max L.) producers in the mid-southern United States?
- (Peer Reviewed Journal)
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Contasti, A.L., Firth, A., Baker, B.H., Brooks, J.P., Locke, M.A., Morin, D.J. 2023. Balancing trade-offs in climate smart-agriculture: will selling carbon credits offset potential losses in the net yield income of small-scale soybean (Glycine max L.) producers in the mid-southern United States?. Decision Analysis. 20(4):243-344. https://doi.org/10.1287/deca.2023.0478.
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Effects of cover crops and soil amendments on soil CO2 fluxes in Mississippi corn cropping system on upland soil
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Hu, J., Miles, D.M., Adeli, A., Brooks, J.P., Podrebarac, F.A., Smith, R.K., Lei, F., Li, X., Jenkins, J.N., Moorehead Ii, R.J. 2023. Effects of cover crops and soil amendments on soil CO2 fluxes in Mississippi corn cropping system on upland soil. Environments. 10(2):19. https://doi.org/10.3390/environments10020019.
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Soil microbial community dynamics in plots managed with cover crops and no-till farming in the Lower Mississippi Alluvial Valley, USA
- (Peer Reviewed Journal)
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Firth, A.G., Brooks, J.P., Locke, M.A., Morin, D.J., Brown, A., Baker, B.H. 2022. Soil microbial community dynamics in plots managed with cover crops and no-till farming in the Lower Mississippi Alluvial Valley, USA. Journal of Applied Microbiology. 134(2); 1-13. https://doi.org/10.1093/jambio/lxac051.
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Dynamics of soil organic carbon and CO2 flux under cover crop and no-till management in soybean cropping systems of the Mid-South
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Firth, A.G., Brooks, J.P., Locke, M.A., Morin, D.J., Brown, A., Baker, B.H. 2022. Dynamics of soil organic carbon and CO2 flux under cover crop and no-till management in soybean cropping systems of the Mid-South. Environments. 9(9):109. https://doi.org/10.3390/environments9090109.
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Drought and root-knot nematode effect on cotton plant growth and detecting its health status using hyperspectral reflectance features
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Ramamoorthy, P., Samiappan, S., Wubben, M., Brooks, J.P., Shrestha, A., Rajendra, P., Reddy, R., Bheemanahalli, R. 2022. Drought and root-knot nematode effect on cotton plant growth and detecting its health status using hyperspectral reflectance features. Remote Sensing. 14(16). https://doi.org/10.3390/rs14164021.
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Combined effects of organic amendments and fertilization on cotton growth and yield
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Adeli, A., Brooks, J.P., Miles, D.M., Todd, M., Feng, G.G., Jenkins, J.N. 2022. Combined effects of organic amendments and fertilization on cotton growth and yield. Agronomy Journal. 2022;1-12. https://DOI.org/10.1002/agj2.21178.
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Broiler litter ammonia: caked, surface, and base moisture effects on emissions
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Miles, D.M., Brooks, J.P., Adeli, A., Moore Jr, P.A. 2022. Broiler litter ammonia: caked, surface, and base moisture effects on emissions. International Journal of Poultry Science. 21(3):129-135. https://doi.org/10.3923/ijps.2022.129.135.
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Decomposition of poultry litter organic matter may be slowed by co-applied industrial and agricultural byproducts
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Li, Y., Tewolde, H., Miles, D.M., Munyon, J.W., Brooks, J.P., Feng, G.G., Yang, M., Zhang, F. 2021. Decomposition of poultry litter organic matter may be slowed by co-applied industrial and agricultural byproducts. Journal of Environmental Quality. 50:364-374. DOI: 10.1002/jeq2.20189.
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Editorial: Exposure, risks, and drivers of the mobile antimicrobial resistance genes in the environment – a global perspective
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Brooks, J.P., Durso, L.M., Ibekwe, A.M. 2021. Editorial: Exposure, risks, and drivers of the mobile antimicrobial resistance genes in the environment – a global perspective. Frontiers in Microbiology. 12:1-3. https://doi.org/10.3389/fmicb.2021.803282.
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Integration of pelleted biosolids with cover crops for improving soil properties
- (Peer Reviewed Journal)
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Adeli, A., Brooks, J.P., Feng, G.G., Mozaffari, M., Jenkins, J.N. 2021. Integration of pelleted biosolids with cover crops for improving soil properties. Soil Science. 44(18); 2677-2690. https://doi.org/10.1002/saj2.20341.
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Effects of supplemental dietary phytase & 25-hydroxycholecalciferol on excreta characteristics and nutrient content from commercial layers inoculated before or at the onset of lay with the F-strain of Mycoplasms gallisepticum
- (Peer Reviewed Journal)
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Miles, D.M., Branton, S.L., Peebles, D.E., Burnham, M.R., Brooks, J.P., Moore Jr, P.A. 2021. Effects of supplemental dietary phytase & 25-hydroxycholecalciferol on excreta characteristics and nutrient content from commercial layers inoculated before or at the onset of lay with the F-strain of Mycoplasms gallisepticum. International Journal of Poultry Science. 20:209-214. https://doi.org/10.3923/ijps.2021.209.214.
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Diversity of Plasmids and Genes Encoding Resistance to
Extended-Spectrum ß-Lactamase in Escherichia coli from
Different Animal Sources
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Ibekwe, A.M., Durso, L.M., Ducey, T.F., Oladeinde, A., Jackson, C.R., Frye, J.G., Dungan, R.S., Moorman, T.B., Brooks, J.P., Obayiuwana, A., Karathia, H., Fanelli, B., Hasan, N.A. 2021. Diversity of plasmids and genes encoding resistance to extended-spectrum ß-Lactamase in Escherichia coli from different animal sources. Microorganisms. 9(5). Article 1057. https://doi.org/10.3390/microorganisms9051057.
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Increased antimicrobial and multidrug resistance downstream of wastewater treatment plants in an urbanizing watershed
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Mukherjee, M., Laird, E., Gentry, T.J., Brooks, J.P., Karthikeyan, R. 2021. Increased antimicrobial and multidrug resistance downstream of wastewater treatment plants in an urbanizing watershed. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2021.657353.
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Elevated incidences of antimicrobial resistance and multidrug resistance in the Maumee River (Ohio, USA), a major tributary of Lake Erie
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Mukherjee, M., Kocian, L., Liles, C., Mustafa, N., Bullerjahn, G., Gentry, T., Brooks, J.P. 2021. Elevated incidences of antimicrobial resistance and multidrug resistance in the Maumee River (Ohio, USA), a major tributary of Lake Erie. Microorganisms. 9(5): 911. https://doi.org/10.3390/microorganisms9050911.
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Co-existing anammox, ammonium-oxidizing, and nitrite-oxidizing bacteria in biocathode-biofilms enable energy-efficient nitrogen removal in bioelectrochemical desalination process
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Ghimire, U., Gude, V.G., Brooks, J.P., Smith, R.K., Deng, D.D. 2021. Co-existing anammox, ammonium-oxidizing, and nitrite-oxidizing bacteria in biocathode-biofilms enable energy-efficient nitrogen removal in bioelectrochemical desalination process. Chemical Engineering Journal. 9(14):4967-4979. https://doi.org/10.1021/acssuschemeng.0c07883.
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Pelleted biosolid and cover crop effects on major southern row crops
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Adeli, A., Brooks, J.P., Read, J.J., Barksdale, D.N., Jenkins, J.N. 2021. Pelleted biosolid and cover crop effects on major southern row crops. Journal of Plant Nutrition. 44(18); 2677-2690. https://doi.org/10.1080/01904167.2021.1927090.
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Electrochemical biofilm control by remolding microbial community in agricultural water distribution systems
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Song, P., Xiao, Y., Brooks, J.P., Freguia, S., Zhou, B., Li, Y. 2020. Electrochemical biofilm control by remolding microbial community in agricultural water distribution systems. Journal of Hazardous Materials. 403. Article 123616. https://doi.org/10.1016/j.jhazmat.2020.123616.
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Investigation of pathogenic bacterial transport by
waterbirds: A case study of flooded and non-flooded rice systems in Mississippi
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Firth, A.G., Baker, B.H., Brooks, J.P., Smith, R.K., Iglay, R.B., Davis, J.B. 2020. Investigation of pathogenic bacterial transport by waterbirds: A case study of flooded and non-flooded rice systems in Mississippi. Water. 12:1833. https://doi.org/10.3390/w12061833.
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Escherichia coli antimicrobial resistance variability in water runoff and soil from a remnant native prairie, an improved pasture, and a cultivated agricultural watershed
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Mukherjee, M., Gentry, T., Mjelde, H., Brooks, J.P., Harmel, R.D., Gregory, L., Wagner, K. 2020. Escherichia coli antimicrobial resistance variability in water runoff and soil from a remnant native prairie, an improved pasture, and a cultivated agricultural watershed. Water. 12(5):1251. https://doi.org/10.3390/w12051251.
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Low external input sustainable agriculture: Winter flooding in rice fields increases bird use, fecal matter and soil health, reducing fertilizer requirements
- (Peer Reviewed Journal)
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Firth, A.G., Baker, B., Brooks, J.P., Smith, R.K., Iglay, R.B., Davis, B.J. 2020. Low external input sustainable agriculture: Winter flooding in rice fields increases bird use, fecal matter and soil health, reducing fertilizer requirements. Agriculture, Ecosystems and Environment. 300. https://doi.org/10.1016/j.agee.2020.106962.
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The occurrence of antibiotic resistance genes in an urban river in nepal
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Thakali, O., Tandukar, S., Brooks, J.P., Sherchan, S.P., Sherchand, J.B., Haramoto, E. 2020. The occurrence of antibiotic resistance genes in an urban river in nepal. Water. 12:450. https://doi.org/10.3390/w12020450.
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Management strategies on an Upland soil for improving soil properties
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Adeli, A., Brooks, J.P., Read, J.J., Feng, G.G., Miles, D.M., Shankle, M.W., Barksdale, D.N., Jenkins, J.N. 2020. Management strategies on an Upland soil for improving soil properties. Soil Science. 51(3); 413-429. HTTPS://DOI.ORG/10.1080/00103624.2019.1709490.
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A preliminary investigation of Feral Hog (Sus scrofa) impacts on water quality
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Brooks, J.P., Smith, R.K., Aldridge, C., Chaney, B., Omer, A., Dentinger, J., Street, G.M., Baker, B.H. 2020. A preliminary investigation of Feral Hog (Sus scrofa) impacts on water quality. Journal of Environmental Quality. 49; 27-37. https://doi.org/10.1002/jeq2.20036.
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Corn and soybean grain yield responses to soil amendments and cover crop in upland soils
- (Peer Reviewed Journal)
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Adeli, A., Brooks, J.P., Read, J.J., Feng, G.G., Miles, D.M., Shankle, M.W., Jenkins, J.N. 2019. Corn and soybean grain yield responses to soil amendments and cover crop in upland soils. Journal of Plant Nutrition. 42(19):2484-2497. https://doi.org/10.1080/01904167.2019.1655046.
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Environmental risk of chlorine-controlled cloffing in drip irrigation system using reclaimed water: the perspective of soil health
- (Peer Reviewed Journal)
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Song, P., Feng, G.G., Brooks, J.P., Zhou, B., Zhou, H., Zhao, Z., Li, Y. 2019. Environmental risk of chlorine-controlled cloffing in drip irrigation system using reclaimed water: the perspective of soil health. Journal of Environmental Science and Technology. 232:1452-1464. https://doi.org/10.1080/08927014.2019.1600191.
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Recovery of bacterial community structure in a chronosequence of reclaimed coal mined soil under two vegetative regimes
- (Peer Reviewed Journal)
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Brooks, J.P., Adeli, A., Smith, R.K., McGrew, R., Read, J.J. 2019. Recovery of bacterial community structure in a chronosequence of reclaimed coal mined soil under two vegetative regimes. Journal of Environmental Quality. 48:1029-1037. https://doi.org/10.2134/jeq2018.09.0349.
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The influence of chlorination timing and concentration on microbial communities in labyrinth channels: implications for biofilm removal
- (Peer Reviewed Journal)
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Song, P., Zhou, B., Feng, G.G., Brooks, J.P., Zhou, H., Zhao, Z., Liu, Y., Li, Y. 2019. The influence of chlorination timing and concentration on microbial communities in labyrinth channels: implications for biofilm removal. BIOFOULING. 35:401-415. https://doi.org/10.1080/08927014.2019.1600191.
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Removal of fecal indicator bacteria and antibiotic resistant genes in constructed wetlands
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Lamori, J.G., Xue, J., Rachmadi, A.T., Lopez, G., Kitajima, M., Gerba, C.P., Pepper, I.L., Brooks, J.P., Sherchan, S. 2019. Removal of fecal indicator bacteria and antibiotic resistant genes in constructed wetlands. Journal of Environmental Management. 26(10):10188-10197. https://doi.org/10.1007/s11356-019-04468-9.
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Poultry litter and cover crop integration into no-till cotton on upland soil
- (Peer Reviewed Journal)
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Adeli, A., Brooks, J.P., Read, J.J., Shankle, M.W., Feng, G.G., Jenkins, J.N. 2019. Poultry litter and cover crop integration into no-till cotton on upland soil. Agronomy Journal. 111:2097-2107. https://doi.org/10.2134/agronj2018.05.0328.
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Cholesterol, yield, tibia and clavicle ash of broilers fed high available Phosphorus corn and/or Phytase with/without Alum litter treatment
- (Peer Reviewed Journal)
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Miles, D.M., Moore Jr, P.A., Brooks, J.P., Smith, D.R., Stilborn, H.L., Rice, D.W., Branton, S.L. 2019. Cholesterol, yield, tibia and clavicle ash of broilers fed high available Phosphorus corn and/or Phytase with/without Alum litter treatment. International Journal of Poultry Science. 18(7)349-352.
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Post-reclamation age effects on soil physical properties and microbial activity under forest and pasture ecosystems
- (Peer Reviewed Journal)
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Adeli, A., Brooks, J.P., Read, J.J., McGrew, R., Jenkins, J.N. 2018. Post-reclamation age effects on soil physical properties and microbial activity under forest and pasture ecosystems. Land Degradation and Development. 50(1):20-34. https://doi.org/10.1080/00103624.2018.1546868.
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Soil microbiological impact of cover crop and fall-applied poultry litter in subsurface bands
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Brooks, J.P., Tewolde, H., Adeli, A., Shanke, M.W., Way, T.R., Smith, R.K., Pepper, I.L. 2018. Soil microbiological impact of cover crop and fall-applied poultry litter in subsurface bands. Journal of Environmental Quality. 47(3):427-435. doi:10.2134/jeq2017.09.0382.
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Effect of manure application rate and rainfall timing on the leaching of antibiotic-resistant bacteria and their associated genes
- (Peer Reviewed Journal)
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Bolster, C.H., Brooks, J.P., Cook, K.L. 2018. Effect of manure application rate and rainfall timing on the leaching of antibiotic-resistant bacteria and their associated genes. Water, Air, and Soil Pollution. https://doi.org/10.1007/s11270-018-3781-6.
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Proof of concept study of Anammox Biocathode for microbial desalination coupled with wastewater treatment
- (Peer Reviewed Journal)
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Mineral composition of litter in commercial broiler houses
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Miles, D.M., Brooks, J.P., Moore Jr, P.A. 2018. Mineral composition of litter in commercial broiler houses. International Journal of Poultry Science. 17(2)85-91.
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Within-house spatial distribution of fecal indicator bacteria in poultry litter
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Winkler, S., Coufal, C., Harmel, R.D., Martin, E., Brooks, J.P., Popham, S., Gentry, T.J. 2017. Within-house spatial distribution of fecal indicator bacteria in poultry litter. Journal of Environmental Quality. 46:1003–1009. doi:10.2134/jeq2017.05.0188.
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Application of a micro-aerosolized disinfectant to clear Mycoplasma gallisepticum from contaminated facilities
- (Peer Reviewed Journal)
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Evans, J.D., Branton, S.L., Collier, S.D., Brooks, J.P., Purswell, J.L. 2017. Application of a micro-aerosolized disinfectant to clear Mycoplasma gallisepticum from contaminated facilities. Journal of Applied Poultry Research. 26(3):416-420.
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Supplemental invasion of Salmonella from the perspective of Salmonella enterica serovars Kentucky and Typhimurium
- (Peer Reviewed Journal)
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Broiler litter x industrial by-products reduce nutrients and microbial losses in surface runoff when applied to forages
- (Peer Reviewed Journal)
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Adeli, A., Read, J.J., Brooks, J.P., Miles, D.M., Feng, G.G., Jenkins, J.N. 2017. Broiler litter x industrial by-products reduce nutrients and microbial losses in surface runoff when applied to forages. Journal of Environmental Quality. 46:339-347.
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Salmonella enterica Serovar Kentucky Flagella are Required for Broiler Skin Adhesion and Caco-2 Cell Invasion
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Salehi, S., Howe, K., Lawrence, M.L., Brooks, J.P., Bailey, H.R., Karsi, A. 2017. Salmonella enterica Serovar Kentucky Flagella are Required for Broiler Skin Adhesion and Caco-2 Cell Invasion. Applied and Environmental Microbiology. 83(2):e02115-16.
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Salmonella enterica serovar Kentucky flagella are required for broiler skin adhesion and Caco-2 cell invasion
- (Peer Reviewed Journal)
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Salehi, S., Howe, K., Lawrence, M., Brooks, J.P., Bailey, H., Karsi, A. 2016. Salmonella enterica serovar Kentucky flagella are required for broiler skin adhesion and Caco-2 cell invasion. Applied and Environmental Microbiology. 83:2.
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Identification of salmonella enterica serovar Kentucky genes involved in attachment to chicken skin
- (Peer Reviewed Journal)
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Salehi, S., Howe, K., Brooks, J.P., Lawrence, M., Bailey, H., Karsi, A. 2016. Identification of salmonella enterica serovar Kentucky genes involved in attachment to chicken skin. BMC Microbiology. 16:168.
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Effects of low-grade weirs on soil microbial communities to advance agricultural best management practices for nitrate remediation
- (Peer Reviewed Journal)
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Mid-flock and post-harvest spatial characterization of broiler litter gas flux and nutrients
- (Peer Reviewed Journal)
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Miles, D.M., Brooks, J.P., Moore Jr, P.A. 2016. Mid-flock and post-harvest spatial characterization of broiler litter gas flux and nutrients. International Journal of Poultry Science. 15(5):175-181.
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Improving estimates of N and P loads in irrigation water from swine manure lagoons
- (Peer Reviewed Journal)
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Mclaughlin, M.R., Brooks, J.P., Adeli, A., Jenkins, J.N. 2016. Improving estimates of N and P loads in irrigation water from swine manure lagoons. Irrigation Science. 34(3):245-260.
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Cultivation and qPCR detection of pathogenic and antibiotic resistant bacteria establishment in naive broiler houses
- (Peer Reviewed Journal)
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Investigation of denitrifying microbe communities within an agricultural drainage system fitted with low-grade weirs
- (Peer Reviewed Journal)
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Effects of climate variability on bacterial pathogen decay in spinach bed macrocosms
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Roberts, B.N., McLaughlin, M.R., Brooks, J.P. 2015. Effects of climate variability on bacterial pathogen decay in spinach bed macrocosms (abstract). American Society of Microbiology Conference Proceedings, May 30-June 2, 2015, New Orleans, LA.
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Using broiler and swine manure lagoon effluent in sawdust-based swine mortality composts: effects of nutrients, bacteria, and gaseous emissions
- (Peer Reviewed Journal)
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McLaughlin, M.R., Brooks, J.P., Adeli, A., Miles, D.M. 2015. Using broiler and swine manure lagoon effluent in sawdust-based swine mortality composts: Effects of nutrients, bacteria, and gaseous emissions. Science of the Total Environment. 532:265-280.
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The effect of broiler litter, swine effluent, and municipal biosolids land application on small plot pathogen, antibiotic resistance, and nutrient levels
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Brooks, J.P., McLaughlin, M.R., Adeli, A., Read, J.J. 2015. The effect of broiler litter, swine effluent, and municipal biosolids land application on small plot pathogen, antibiotic resistance, and nutrient levels (abstract). Waste 2 Worth Conference Proceedings. March 30-April 3, 2015, Seattle, WA.
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Broiler house litter sampling: the final frontier
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Miles, D.M., Brooks, J.P., Rowe, D.E., Moore Jr, P.A., Evans, J.D., Jenkins, J.N. 2015. Broiler house litter sampling: the final frontier. ASABE Annual International Meeting. Paper number 152152501. doi: 10.13031/aim.20152152501.
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Pathogen re-colonization of in-house composted and non-composted broiler litter
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Brooks, J.P., Mclaughlin, M.R., Adeli, A., Miles, D.M. 2015. Pathogen re-colonization of in-house composted and non-composted broiler litter. Journal of Applied Poultry Research. 24:157–167. doi.org/10.3382/japr/pfv013.
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Improving N and P estimates for swine manure lagoon irrigation water
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Enhancing management of fall-applied poultry litter with cover crop and subsurface band placement in no-till cotton
- (Peer Reviewed Journal)
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Tewolde, H., Shankle, M.R., Way, T.R., Adeli, A., Brooks, J.P., He, Z. 2015. Enhancing management of fall-applied poultry litter with cover crop and subsurface band placement in no-till cotton. Agronomy Journal. 107:449-458.
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Effect of manure application rate and timing on the leaching potential of antibiotic resistant bacteria.
- (Abstract Only)
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Bolster, C.H., Cook, K.L., Brooks, J.P. 2014. Effect of manure application rate and timing on the leaching potential of antibiotic resistant bacteria.. ASA-CSSA-SSSA Annual Meeting Abstracts. Abastract.
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Assessing climate variability impact on thermotolerant coliform bacteria in surface water
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Jayakody, P., Parajuli, P.B., Brooks, J.P. 2015. Assessing climate variability impact on thermotolerant coliform bacteria in surface water. Human and Ecological Risk Assessment. 21:691-706.
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Ammonia and nitrous oxide emissions from a commercial broiler house
- (Peer Reviewed Journal)
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Miles, D.M., Moore Jr., P.A., Burns, R.T., Brooks, J.P. 2014. Ammonia and nitrous oxide emissions from a commercial broiler house. Journal of Environmental Quality. 43:1119-1124.
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Microbial ecology, bacterial pathogens, and antibiotic resistant genes in swine manure as influenced by three swine management systems
- (Peer Reviewed Journal)
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Brooks, J.P., Adeli, A., McLaughlin, M.R. 2014. Microbial ecology, bacterial pathogens, and antibiotic resistant genes in swine manure as influenced by three swine management systems. Water Research. 57:96-103.
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A new sampler for stratified lagoon chemical and microbiological assessments
- (Peer Reviewed Journal)
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McLaughlin, M.R., Brooks, J.P., Adeli, A. 2014. A new sampler for stratified lagoon chemical and microbiological assessments. Environmental Monitoring and Assessment. 186:4097-4110.
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Age chronosequence effects on restoration quality of reclaimed coal mine soils in Mississipian agroecosystems
- (Peer Reviewed Journal)
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Adeli, A., Brooks, J.P., McLaughlin, M.R., Read, J.J., Willers, J.L., Lang, D., McGrew, R. 2013. Age chronosequence effects on restoration quality of reclaimed coal mine soils in Mississipian agroecosystems. Soil Science. 178:335-343.
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Cover crop enhances the benefit of fall-applied poultry litter as cotton fertilizer
- (Abstract Only)
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Tewolde, H., Shankle, M., Way, T.R., Adeli, A., Brooks, J.P. 2013. Cover crop enhances the benefit of fall-applied poultry litter as cotton fertilizer. Agronomy Abstracts. American Society of Agronomy, November 3-6, 2013, Tampa, FL. CD-Rom.
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Spatial and temporal analysis of microbial populations in production broiler house litter in the southeastern U.S.
- (Peer Reviewed Journal)
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Roberts, B.N., Bailey, R.H., McLaughlin, M.R., Miles, D.M., Brooks, J.P. 2013. Spatial and temporal analysis of microbial populations in production broiler house litter in the southeastern U.S. Journal of Applied Poultry Research. 22:759-770.
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Broiler litter ammonia emissions near sidewalls, feeders and waterers
- (Peer Reviewed Journal)
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Miles, D.M., Brooks, J.P., McLaughlin, M.R., Rowe, D.E. 2013. Broiler litter ammonia emissions near sidewalls, feeders and waterers. Poultry Science. 92:1693-1698.
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Evaluating spatial and temporal variability of fecal coliform bacteria loads at Pelahatchie Watershed in Mississippi
- (Peer Reviewed Journal)
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Jayakody, P., Parajuli, P.B., Brooks, J.P. 2014. Evaluating spatial and temporal variability of fecal coliform bacteria loads at Pelahatchie Watershed in Mississippi. Human and Ecological Risk Assessment. 20:1023-1041.
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Method of soil sampling following subsurface banding of solid manure
- (Peer Reviewed Journal)
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Tewolde, H., Way, T.R., Pote, D.H., Adeli, A., Brooks, J.P., Shankle, M.W. 2013. Method of soil sampling following subsurface banding of solid manures. Agronomy Journal. 105:519-526.
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Ammonia and greenhouse gas emissions in swine mortality composts of sawdust, broiler litter, and swine lagoon effluent
- (Abstract Only)
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Miles, D.M., McLaughlin, M.R., Brooks, J.P., Adeli, A. 2013. Emissions from swine mortalilty composts [abstract]. Waste to Worth: "Spreading" Science and Solutions, April 1-5, 2013, Denver, CO. http://www.extension.org/pages/67661/emissions-in-swine-mortality-composts.
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Runoff quality from no-till cotton fertilized with broiler litter in subsurface bands
- (Peer Reviewed Journal)
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Adeli, A., Tewolde, H., Shankle, M.W., Way, T.R., Brooks, J.P., McLaughlin, M.R. 2013. Runoff quality from no-till cotton fertilized with broiler litter in subsurface bands. Journal of Environmental Quality. 42:284-291.
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The effect of poultry manure application rate and AlCl3 treatment on bacterial fecal indicators in runoff
- (Peer Reviewed Journal)
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Brooks, J.P., McLaughlin, M.R., Adeli, A., Miles, D.M. 2012. The effect of poultry manure application rate and AlCl3 treatment on bacterial fecal indicators in runoff. Journal of Water and Health. 10:619-628.
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Land application of manure and class B biosolids: an occupational and public quantitative microbial risk assessment
- (Peer Reviewed Journal)
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Brooks, J.P., McLaughlin, M.R., Gerba, C.P., Pepper, I.L. 2012. Land application of manure and class B biosolids: an occupational and public quantitative microbial risk assessment. Journal of Environmental Quality. 41:2009-2023.
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Land application of manure and class B biosolids: an occupational and public quantitative microbial risk assessment
- (Peer Reviewed Journal)
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Brooks, J.P., McLaughlin, M.R., Gerba, C.P., Pepper, I.L. 2012. Land application of manure and class B biosolids: an occupational and public quantitative microbial risk assessment. Journal of Environmental Quality. 41:2009-2023.
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Effects of bedding materials in applied broiler litter and immobilizing agents on runoff water, soil properties, and bermudagrass growth
- (Peer Reviewed Journal)
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Sheng, J., Adeli, A., Brooks, J.P., McLaughlin, M.R., Read, J.J. 2014. Effects of bedding materials in applied broiler litter and immobilizing agents on runoff water, soil properties, and bermudagrass growth. Journal of Environmental Quality. 43:290-296.
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Assessment of nutrients, bacteria, and gaseous emissions in swine mortality composts of sawdust, broiler litter, and swine lagoon effluent
- (Abstract Only)
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McLaughlin, M.R., Brooks, J.P., Adeli, A., Miles, D.M. 2012. Assessment of nutrients, bacteria, and gaseous emissions in swine mortality composts of sawdust, broiler litter, and swine lagoon effluent. Agronomy Abstracts. http://scisoc.confex.com/scisoc/2012am/webprogram/Paper72618.html.
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Chemical property of poultry litter amended with selected industrial and agricultural byproducts
- (Abstract Only)
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Tewolde, H., Brooks, J.P., Miles, D.M., Adeli, A. 2012. Chemical property of poultry litter amended with selected industrial and agricultural byproducts [abstract]. Agronomy Abstracts. CD-ROM.
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Temporal flux and spatial dynamics of nutrients, fecal indicators, and zoonotic pathogens in anaerobic swine manure lagoon water
- (Peer Reviewed Journal)
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McLaughlin, M.R., Brooks, J.P., Adeli, A. 2012. Temporal flux and spatial dynamics of nutrients, fecal indicators, and zoonotic pathogens in anaerobic swine manure lagoon water. Water Research. 46:4949-4960.
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Bacterial populations within copper mine tailings: long-term effects of amendment with Class A biosolids
- (Peer Reviewed Journal)
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Pepper, I.L., Zerghi, H.G., Bengson, S.A., Iker, B.C., Banerjee, M.J., Brooks, J.P. 2012. Bacterial populations within copper mine tailings: long-term effects of amendment with Class A biosolids. Journal of Applied Microbiology. 113:569-577.
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Effects of pelletized and non-pelletized poultry litter and nutrient immobilizing agent on surface runoff water quality from a forage based system
- (Abstract Only)
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Adeli, A., McLaughlin, M.R., Brooks, J.P., Read, J.J., Jenkins, J.N. 2012. Effects of pelletized and non-pelletized poultry litter and nutrient immobilizing agent on surface runoff water quality from a forage based system [abstract]. Agronomy Abstracts. CD-ROM.
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Effects of agricultural and industrial by-products on restoration quality of reclaimed coal mine soil in Mississippi
- (Abstract Only)
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Adeli, A., Read, J.J., Lang, D.J., Brooks, J.P., McLaughlin, M.R., McGrew, N.R., Willers, J.L. 2012. Effects of agricultural and industrial by-products on restoration quality of reclaimed coal mine soil in Mississippi [abstract]. National Meeting of the American Society of Mining and Reclamation. http://www.asmr.us/Meetings/2012/CD%20Version%20Papers/0002-Adeli-MS-1.pdf.
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Age chronosequence and landscape effects on the quality characteristics of reclaimed coal mine soils under forest and pasture based system in Mississippi
- (Abstract Only)
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Adeli, A., Land, D.J., Brooks, J.P., McLaughlin, M.R., Read, J.J., McGrew, N.R., Willers, J.L. 2012. Age chronosequence and landscape effects on the quality characteristics of reclaimed coal mine soils under forest and pasture based system in Mississippi [abstract]. National Meeting of the American Society of Mining and Reclamation. http://www.asmr.us/Meetings/2012/CD%20Version%20Papers/0003-Adeli-MS-2.pdf.
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Effects of immobilizing agents on surface runoff water quality from bermudagrass sod fertilized with broiler litter
- (Abstract Only)
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Sheng, J., Adeli, A., Brooks, J.P., McLaughlin, M.R. 2013. Effects of immobilizing agents on surface runoff water quality from bermudagrass sod fertilized with broiler litter. Proceedings Mississippi Water Resources Conference, Appril 3-4, 2012, Jackson, MS. p. 63.
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Effects of industrial by-products on leaching losses of broiler litter nutrients applied to mine soils as reclamation technique in Mississippi
- (Abstract Only)
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Sheng, J., Adeli, A., Brooks, J.P., Mclaughlin, M.R., Read, J.J., Land, D.J., Mcgrew, N.R. 2012. Effects of industrial by-products on leaching losses of broiler litter nutrients applied to mine soils as reclamation technique in Mississippi. Proceedings of American Society of Mining and Reclamation Conference, June 8-15, 2012, Tupelo, MS CD-ROM.
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Evaluation of precision litter application practices for cotton production and soil quality
- (Proceedings)
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Survival of bacterial and viral pathogens in swine effluent, cattle manure, and biosolids when applied to Southeastern U.S. soils
- (Abstract Only)
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Roberts, B.N., McLaughlin, M.R., Brooks, J.P. 2011. Survival of bacterial and viral pathogens in swine effluent, cattle manure, and biosolids when applied to Southeastern U.S. soils [abstract]. AFRI Project Directors Meeting, Milwaukee, WI, July 30, 2011. Presentation Only.
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Microbial ecology: new insights into the great wide-open culture independent sea
- (Abstract Only)
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Brooks, J.P. 2011. Microbial ecology: new insights into the great wide-open culture independent sea. Soil Science Society of America Abstracts. Paper #122-1. CD-ROM.
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Bioaerosol release, transport, and fate during land application of manure and biosolid residuals
- (Abstract Only)
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Brooks, J.P. 2011. Bioaerosol release, transport, and fate during land application of manure and biosolid residuals. Soil Science Society of America Abstract. Paper # 159-13. CD-ROM.
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Land application of organic residuals: Public health threat or environmental benefit
- (Popular Publication)
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King, G.M., Brooks, J.P., Brown, S., Gerba, C., O'Connor, G.A., Pepper, I.L. 2011. Land application of organic residuals: Public health threat or environmental benefit. American Society for Microbiology. Policy Booklet. 21 pp.
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Nutrients and bacteria in common contiguous Mississippi soils with and without broiler litter fertilization
- (Peer Reviewed Journal)
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McLaughlin, M.R., Brooks, J.P., Adeli, A., Tewolde, H. 2011. Nutrients and bacteria in common contiguous Mississippi soils with and without broiler litter fertilization. Journal of Environmental Quality. 40:1322-1331.
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Animal and industrial by-products management strategies for sustainable agricultural production system and environmental quality
- (Abstract Only)
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Adeli, A., Jenkins, J.N., Brooks, J.P. 2011. Animal and industrial by-products management strategies for sustainable agricultural production system and environmental quality. In Papanikos, Gregory T. (Ed.), 4th Annual International Symposium on Agricultural Research, July 18-21, 2011, Athens, Greece. p. 13.
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Spatial contrasts of seasonal and intraflock broiler litter trace gas emissions, physical and chemical properties
- (Peer Reviewed Journal)
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Miles, D.M., Brooks, J.P., Sistani, K.R. 2011. Spatial contrasts of seasonal and intraflock broiler litter trace gas emissions, physical and chemical properties. Journal of Environmental Quality. 40:176-187.
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Effect of surface incorporation of broiler litter applied to no-till cotton on runoff quality
- (Peer Reviewed Journal)
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Adeli, A., Shankle, M.W., Tewolde, H., Brooks, J.P., Sistani, K.R., McLaughlin, M.R., Rowe, D.E. 2011. Effect of surface incorporation of broiler litter applied to no-till cotton on runoff quality. Journal of Environmental Quality. 40:566-574.
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Evaluating microbiological risks of biosolids land application
- (Abstract Only)
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Brooks, J.P., Gerba, C.P., Pepper, I.L. 2010. Evaluating microbiological risks of biosolids land application (abstract). Workshop Proceedings Controlling Pathogens and Meeting Regulatory Requirements for Land Application of Biosolids, Waste Environment Federation Technical Exhibition and Conference, October 2-3, 2010, New Orleans, LA. Paper #209. CD-ROM.
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Comparing bacteria inside and outside swine lagoon effluent spray fields.
- (Abstract Only)
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McLaughlin, M.R., Brooks, J.P., Adeli, A., Read, J.J. 2010. Comparing bacteria inside and outside swine lagoon effluent spray fields [Abstract]. 55:10. CSA News.
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Pathogens and Indicators in United States Class B Biosolids: National and Historic Distributions
- (Peer Reviewed Journal)
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Pepper, I.L., Brooks, J.P., Sinclair, R.G., Gurian, P.L., Gerba, C.P. 2010. Pathogens and indicators in United States Class B biosolids: national and historic distributions. Journal of Environmental Quality. 39:2185-2190.
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The Survival of Bacterial and Viral Pathogens in Manure and Biosolids in the Southeastern United States
- (Abstract Only)
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Brooks, J.P., McLaughlin, M.R. 2010. The survival of bacterial and viral pathogens in manure and biosolids in the Southeastern United States (abstract). Presentation Bioactive Food Components for Optimal Health, Food Safety, and Improving Food Quality, and Value, July 16-17, 2010, Chicago, IL. CD-ROM.
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Microbial and Antibiotic REsistant Constituents Associated with Biological Aerosols Within A Commercial Poultry House
- (Peer Reviewed Journal)
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Brooks, J.P., McLaughlin, M.R., Scheffler, B.E., Miles, D.M. 2010. Microbial and antibiotic resistant constituents associated with biological aerosols and poultry litter within a commercial poultry house. Science of the Total Environment. 408:4770-4777.
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Nutrient and Bacterial Levels in Common Contiguous Soils With and Without Poultry Litter Fertilization
- (Abstract Only)
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McLaughlin, M.R., Brooks, J.P., Adeli, A. 2010. Nutrient and bacterial levels in common contiguous soils with and without poultry litter fertilization [abstract]. Agronomy Abstracts. Available: http\\a-c-s.confex.com/crops/2010am/webprogram/Paper58312.html.
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Poultry Industry Trends for Litter Utilization
- (Proceedings)
|
Miles, D.M., Brooks, J.P. 2010. Poultry Industry Trends for Litter Utilization. WEF Residuals and Biosolids Conference, Water Environment Federation. p. 1440-1447. CD-Rom.
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Comparison of selected nutrients and bacteria from common contiguous soils inside and outside swine lagoon effluent spray fields after long-term use
- (Peer Reviewed Journal)
|
McLaughlin, M.R., Brooks, J.P., Adeli, A., Read, J.J. 2010. Comparison of selected nutrients and bacteria from common contiguous soils inside and outside swine lagoon effluent spray fields after long-term use. Journal of Environmental Quality. 39:1829-1840.
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Molecular Characterization of Swine Manure Lagoon Microbial and Antibiotic Resistant Populations
- (Abstract Only)
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Brooks, J.P., McLaughlin, M.R. 2010. Molecular Characterization of Swine Manure Lagoon Microbial and Antibiotic Resistant Populations [abstract]. Proceedings American Society of Microbiology. #Q-084.
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Influence of long-term land application of class B biosolids on soil bacterial diversity
- (Peer Reviewed Journal)
|
Zerzghi, H., Brooks, J.P., Gerba, C.P., Pepper, I.L. 2010. Influence of long-term land application of class B biosolids on soil bacterial diversity. Journal of Applied Microbiology. 109:698-706.
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Long-Term Effects of Land Application of Class B Biosolids on the Soil Microbial Populations, Pathogens, and Activity
- (Peer Reviewed Journal)
|
Zerzghi, H., Gerba, C.P., Brooks, J.P., Pepper, I.L. 2010. Long-term effects of land application of Class B biosolids on the soil microbial populations, pathogens, and activity. Journal of Environmental Quality. 39:402-408.
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Comparative microbial risks of land applied biosolids and animal manure
- (Abstract Only)
|
Brooks, J.P., Gerba, C.P., Pepper, I.L. 2009. Comparative microbial risks of land applied biosolids and animal manure [Abstract]. Water Environment Federation Residuals and Biosolids Conference. CD-Rom. p. 53.
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Poultry industry trends for litter usage
- (Abstract Only)
|
Miles, D.M., Brooks, J.P. 2010. Poultry industry trends for litter usage. Proceedings Residuals and Biosolids Conference, May 23-26, 2010, Savannah, GA. p. 1440. CD-ROM.
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Biosolids and manure: Antibiotic resistant bacteria and endotoxin
- (Abstract Only)
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Brooks, J.P. 2009. Biosolids and Manure: Antibiotic Resistant Bacteria and Endotoxin [abstract]. Proceedings Water Environment Microconstituents in Industrial Water Quality Conference. #16B.
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Analyses of nutrients and fecal bacteria from common contiguous soils inside and outside swine lagoon effluent spray fields
- (Abstract Only)
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Mclaughlin, M.R., Brooks, J.P., Adeli, A. 2009. Analyses of nutrients and fecal bacteria from common contiguous soils inside and outside swine lagoon effluent spray fields [abstract]. American Society of Agronomy Abstracts. Available: http://a-c-s.confex.com/crops/2009am/webprogram/Paper53240.html.
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Characterization of selected nutrients and bacteria from anerobic swine manure lagoons on sow, nursery, and finisher farms in the Mid-South US
- (Peer Reviewed Journal)
|
McLaughlin, M.R., Brooks, J.P., Adeli, A. 2009. Characterization of Selected Nutrients and Bacteria from Anerobic Swine Manure Lagoons on Sow, Nursery, and Finisher Farms in the Mid-South US. Journal of Environmental Quality. 38:2422-2430.
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Antibiotic Resistant Bacterial Profiles of Anaerobic Swine Lagoon Effluent
- (Peer Reviewed Journal)
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Brooks, J.P., McLaughlin, M.R. 2009. Antibiotic Resistant Bacterial Profiles of Anaerobic Swine Lagoon Effluent. Journal of Environmental Quality. 38:2431-2437.
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Antibiotic resistant bacterial profiles of anaerobic swine lagoon effluent
- (Abstract Only)
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Brooks, J.P., McLaughlin, M.R. 2009. Antibiotic resistant bacterial profiles of anaerobic swine lagoon effluent [abstract). American Society of Microbiology. Paper No. Q-087.
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Spatial and temporal analysis of microbial populations in production broiler house litter
- (Abstract Only)
|
Roberts, B.N., McLaughlin, M.R., Brooks, J.P. 2009. Spatial and temporal analysis of microbial populations in production broiler house litter [abstract]. American Society of Microbiology. Paper No. Q-099.
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Broiler litter application and tillage effects on restoration of degraded soils
- (Proceedings)
|
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Recovery of Salmonella from bermudagrass exposed to simulated wastewater
- (Peer Reviewed Journal)
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McLaughlin, M.R., Brooks, J.P. 2009. Recovery of Salmonella from bermudagrass exposed to simulated wastewater. Journal of Environmental Quality. 38:337-342.
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Rainfall simulation in greenhouse microcosms to assess bacterial-associated runoff from land-applied poultry litter
- (Peer Reviewed Journal)
|
Brooks, J.P., Adeli, A., Read, J.J., McLaughlin, M.R. 2009. Rainfall simulation in greenhouse microcosms to assess bacterial-associated runoff from land-applied poultry litter. Journal of Environmental Quality. 38:218-229.
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Evaluating carbon dioxide, methane, and nitrous oxide flux from N- and P-based broiler litter fertilization of bermudagrass
- (Abstract Only)
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Miles, D.M., Adeli, A., Brooks, J.P. 2008. Evaluating carbon dioxide, methane, and nitrous oxide flux from N- and P-based broiler litter fertilization of bermudagrass [abstract]. Agronomy Abstracts. Paper No. 68-15.
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Microbiological quality of effluents from anaerobic swine manure lagoons in Mississippi
- (Abstract Only)
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McLaughlin, M.R., Brooks, J.P. 2008. Microbiological quality of effluents from anaerobic swine manure lagoons in Mississippi [abstract]. Agronomy Abstracts. Paper No. 624-11.
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Microbiological quality of litter from poultry houses in Mississippi
- (Abstract Only)
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Brooks, J.P., McLaughlin, M.R. 2008. Microbiological quality of litter from poultry houses in Mississippi. Agronomy Abstracts. Paper No. 624-12.
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Chemical, physical and biological properties of a marginal soil as influenced by tillage and broiler litter application
- (Abstract Only)
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Adeli, A., Dabney, S.M., Brooks, J.P., Jenkins, J.N. 2008. Chemical, physical and biological properties of a marginal soil as influenced by tillage and broiler litter application [abstract]. Agronomy Abstracts. Paper No. 693-16.
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Estimated occupational risk from bioaerosols generated during land application of Class B biosolids
- (Peer Reviewed Journal)
|
Tanner, B.D., Brooks, J.P., Gerba, C.P., Haas, C.N., Josephson, K.L., Pepper, I.L. 2008. Estimated occupational risk from bioaerosols generated during land application of Class B biosolids. Journal of Environmental Quality. 37:2311-2321.
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Sustainability of land-application of class B liquid biosolids
- (Peer Reviewed Journal)
|
Pepper, I.L., Zerzghi, H., Brooks, J.P., Gerba, C.P. 2008. Sustainability of land application of class B liquid biosolids. Journal of Environmental Quality. 37:S-58-S-67.
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Assessing the risks to water bodies from nitrogen vs. phosphorus based broiler litter strategy
- (Abstract Only)
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Adeli, A., Brooks, J.P., Jenkins, J.N. 2008. Assessing the risks to water bodies from nitrogen vs. phosphorus based broiler litter strategy [abstract]. Mississippi 38th Water Resources Conference Proceedings. p. 53.
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Small farm plots and application of simulated rain to determine the potential for bacterial runoff after poultry litter surface application to bermudagrass
- (Abstract Only)
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Brooks, J.P., Adeli, A. 2008. Small farm plots and application of simulated rain to determine the potential for bacterial runoff after poultry litter surface application to bermudagrass [abstract]. Mississippi 38th Water Resources Conference Proceedings. p. 17.
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Experimental Salmonella contamination and recovery on bermudagrass
- (Abstract Only)
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Mclaughlin, M.R., Brooks, J.P. 2007. Experimental Salmonella contamination and recovery on bermudagrass [abstract]. Agronomy Abstracts. Abstract 334, CD-ROM.
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Moisture management of broiler litter: Effects on ammonia generation
- (Abstract Only)
|
Miles, D.M., Rowe, D.E., Brooks, J.P. 2007. Moisture management of broiler litter: Effects on ammonia generation [abstract]. Agronomy Abstracts. Poster #245-24, CD-ROM.
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Risk of infection related to biological aerosols from Class A and B biosolid practices
- (Abstract Only)
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Brooks, J.P. 2007. Risk of Infection Related to Biological Aerosols from Class A and B Biosolid Practices [abstract]. Proceedings Water Environment Research Conference. #W203.
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EPA worst case water microcosms for testing phage biocontrol of Salmonella
- (Peer Reviewed Journal)
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McLaughlin, M.R., Brooks, J.P. 2008. EPA worst case water microcosms for testing phage biocontrol of Salmonella. Journal of Environmental Quality. 37:266-271.
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Bacteria associated with rain runoff following land application of poultry litter
- (Abstract Only)
|
Brooks, J.P. 2007. Bacteria associated with rain runoff following land application of poultry litter. Agronomy Abstracts. CD-ROM.
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Effects of broiler litter management on runoff N and P from bermudagrass forage based system
- (Abstract Only)
|
Adeli, A., Brooks, J.P., Rowe, D.E., Miles, D.M. 2007. Effects of broiler litter management on runoff N and P from bermudagrass forage based system. Proceedings 37th Annual Mississippi Water Resources Conference. 5 p.
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Antibiotic resistant and pathogenic bacteria associated with rain runoff following land application of poultry litter
- (Abstract Only)
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Brooks, J.P., Adeli, A., Rowe, D.E. 2007. Antibiotic resistant and pathogenic bacteria associated with rain runoff following land application of poultry litter [Abstract]. Proceedings 37th Annual Mississippi Water Resources Conference. p. 115-119.
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Nitrogen and P dynamics in a plant, soil and runoff system as influenced by broiler litter management
- (Abstract Only)
|
Adeli, A., Brooks, J.P., Miles, D.M., Rowe, D.E., Read, J.J. 2007. Nitrogen and P dynamics in a plant, soil and runoff system as influenced by broiler litter management [abstract]. Agronomy Abstracts. p.119.
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Source of aersolized bacteria during land application of biosolids
- (Peer Reviewed Journal)
|
Brooks, J.P., Gerba, C.P., Pepper, I.L. 2007. Diversity of of aersolized bacteria during land application of biosolids. Journal of Applied Microbiology. 103:1779-1790.
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Antibiotic resistant bacteria associated with biological aerosols within broiler houses
- (Abstract Only)
|
Brooks, J.P., Miles, D.M. 2007. Antibiotic resistant bacteria associated with biological aerosols within broiler houses [Abstract]. Proceedings American Society of Microbiology. CD-ROM.
|
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OCCURRENCE OF ANTIBIOTIC RESISTANT BACTERIA AND ENDOTOXIN ASSOCIATED WITH THE LAND APPLICATION OF BIOSOLIDS
- (Peer Reviewed Journal)
|
Brooks, J.P., Maxwell, S.L., Rensing, C., Gerba, C.P., Pepper, I.L. 2007. Occurrence of antibiotic-resistant bacteria and endotoxin associated with the land application of biosolids. Canadian Journal of Microbiology. 53:616-622.
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EPA worst case water microcosms for testing phage biocontrol of Salmonella
- (Abstract Only)
|
McLaughlin, M.R., Brooks, J.P. 2006. EPA worst case water microcosms for testing phage biocontrol of salmonella [abstract]. Agronomy Abstracts. Abstract No. 25008.
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