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ARS Home » Northeast Area » Beltsville, Maryland (BARC) » Beltsville Agricultural Research Center » Soybean Genomics & Improvement Laboratory » People & Locations » Charles Quigley (Chuck)
Charles V Quigley (Chuck)
Soybean Genomics & Improvement Laboratory
Geneticist Plants

Phone: (301) 504-5751
Fax: (301) 504-5728

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Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Development and implementation of nested single-nucleotide polymorphism (SNP) assays for breeding and genetic research applications Reprint Icon - (Peer Reviewed Journal)
Song, Q., Quigley, C.V., He, R., Wang, D., Nguyen, H., Miranda, C., Li, Z. 2024. Development and implementation of nested single-nucleotide polymorphism (SNP) assays for breeding and genetic research applications. The Plant Genome. 17(2). Article e20491. https://doi.org/10.1002/tpg2.20491.
Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans Reprint Icon - (Peer Reviewed Journal)
Vuong, T.D., Florez-Palacios, L., Mozzoni, L., Clubb, M., Quigley, C.V., Song, Q., Kamad, S., Yuan, A., Chan, T., Mian, R.M., Nguyen, H. 2023. Genomic analysis and characterization of new loci associated with seed protein and oil content in soybeans. The Plant Genome. (16)4. Article e20400. https://doi.org/10.1002/tpg2.20400.
Genetic variation and genetic complexity of nodule occupancy in soybean inoculated with USDA110 and USDA123 rhizobium strains Reprint Icon - (Peer Reviewed Journal)
Araya, S., Elia, P.E., Quigley, C.V., Song, Q. 2023. Genetic variation and genetic complexity of nodule occupancy in soybean inoculated with USDA110 and USDA123 rhizobium strains. BMC Genomics. 24. Article e520 (2023). https://doi.org/10.1186/s12864-023-09627-4.
Recombination hotspots in soybean (Glycine Max (L.) Merr.) Reprint Icon - (Peer Reviewed Journal)
McConaughy, S., Amundsen, K., Quigley, C.V., Pantalone, V., Hyten, D. 2023. Recombination hotspots in soybean (Glycine Max (L.) Merr.). G3, Genes/Genomes/Genetics. https://doi.org/10.1093/g3journal/jkad075.
Genotype imputation for soybean nested association mapping population to improve precision of QTL detection Reprint Icon - (Peer Reviewed Journal)
Chen, L., Yang, S., Araya, S., Quigley, C.V., Taliercio, E.W., Mian, R.M., Specht, J., Diers, B., Song, Q. 2022. Genotype imputation for soybean nested association mapping population to improve precision of QTL detection. Theoretical and Applied Genetics. 135(5), pp.1797-1810. https://doi.org/10.1007/s00122-022-04070-7.
Identification of quantitative disease resistance Loci towards four Pythium species in soybean Reprint Icon - (Peer Reviewed Journal)
Clevinger, E., Biyashev, R., Lerch, E., Yu, H., Quigley, C.V., Song, Q., Dorrance, A., Robertson, A., Maroof, S. 2021. Identification of quantitative disease resistance Loci towards four Pythium species in soybean. Frontiers in Plant Science. 12:514. https://doi.org/10.3389/fpls.2021.644746.
Soybean BARCSoySNP6K - An assay for soybean genetics and breeding research Reprint Icon - (Peer Reviewed Journal)
Song, Q., Yan, L., Quigley, C.V., Fickus, E.W., Wei, H., Chen, L., Dong, F., Arya, S., Liu, J., Hyten, D., Pantalone, V., Nelson, R.L. 2020. Soybean BARCSoySNP6K - An assay for soybean genetics and breeding research. Plant Journal. https://doi.org/10.1111/tpj.14960.
Genetic diversity and phylogenetic relationships of annual and perennial Glycine species Reprint Icon - (Peer Reviewed Journal)
Hwang, E., Schroeder, S.G., Fickus, E.W., Quigley, C.V., Cregan, P., Song, Q. 2019. Genetic diversity and phylogenetic relationships of annual and perennial Glycine species. G3, Genes/Genomes/Genetics. https://doi.org/10.1534/g3.119.400220.
Fine mapping of genes conferring resistance to rust and anthracnose of common bean - (Trade Journal)
Hurtado-Gonzales, O.P., Valentini, G., Gilio, T., Quigley, C.V., Song, Q., Goncalves-Vidigal, M.C., Pastor Corrales, M.A. 2018. Fine mapping of genes conferring resistance to rust and anthracnose of common bean. Bean Improvement Cooperative Annual Report. 61:27-28.
Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses Reprint Icon - (Peer Reviewed Journal)
Yan, L., Hofmann, N., Li, S., Ferreira, M., Song, B., Jiang, G., Ren, S., Quigley, C.V., Fickus, E.W., Cregan, P., Song, Q. 2017. Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses. Biomed Central (BMC) Genomics. 18:529. https://doi.org/10.1186/s12864-017-3922-0.
Genetic characterization of the soybean Nested Association Mapping (NAM) population - (Peer Reviewed Journal)
Song, Q., Yan, L., Quigley, C.V., Jordan, B.D., Fickus, E.W., Schroeder, S.G., Song, B., An, Y., Hyten, D., Nelson, R.L., Rainey, K., Beavis, W.D., Specht, J., Diers, B., Cregan, P. 2017. Genetic characterization of the soybean Nested Association Mapping (NAM) population. The Plant Genome. 10(2). doi: 10.3835/plantgenome2016.10.0109.
Environmental adaptation in wild soybeans (Glycine soja) across their native geographic range in northeast Asia - (Peer Reviewed Journal)
Leamy, L.J., Lee, C., Mjuacic, I., Quigley, C.V., Nelson, R.L., Luo, Y., Chen, Y., Peregrine, E.K., Song, B. 2016. Environmental adaptation in wild soybeans (Glycine soja) across their native geographic range in northeast Asia. Ecology and Evolution. 6(17):6332-6344.
Fingerprinting soybean germplasm and its utility in genomic research Reprint Icon - (Peer Reviewed Journal)
Song, Q., Hyten, D.L., Jia, G., Quigley, C.V., Fickus, E.W., Nelson, R.L., Cregan, P. 2015. Fingerprinting soybean germplasm and its utility in genomic research. G3, Genes/Genomes/Genetics. 5(9):1-17.
Development and evaluation of SoySNP50K, a high-density genotyping array for soybean - (Peer Reviewed Journal)
Song, Q., Hyten, D., Jia, G., Quigley, C.V., Fickus, E.W., Nelson, R.L., Cregan, P.B. 2013. Development and evaluation of SoySNP50K, a high-density genotyping array for soybean. PLoS Genetics. 8(1):e54985.
High-throughput SNP discovery and assay development in Common Bean - (Peer Reviewed Journal)
Hyten, D.L., Song, Q., Fickus, E.W., Choi, I., Quigley, C.V., Hwang, E., Pastor Corrales, M.A., Cregan, P.B. 2010. High-throughput SNP discovery and assay development in Common Bean. Biomed Central (BMC) Genomics. 11:475.
Single nucleotide polymorphisms in common bean: their discovery and genotyping using a multiplex detection system - (Peer Reviewed Journal)
Gaitan-Solis, E., Choi, I., Quigley, C.V., Cregan, P.B., Tohme, J. 2008. Single nucleotide polymorphisms in common bean: their discovery and genotyping using a multiplex detection system. The Plant Genome. 1:125-134.
A Soybean Transcript Map: Discovery and Mapping of Single Nucleotide Polymorphisms in Soybean Genes - (Peer Reviewed Journal)
Choi, I., Hyten, D.L., Matukumalli, L.K., Song, Q., Chaky, J.M., Quigley, C.V., Chase, K., Lark, K.G., Reiter, R.S., Yoon, M., Hwang, E., Yi, S., Young, N.D., Shoemaker, R.C., Van Tassell, C.P., Specht, J.E., Cregan, P.B. 2007. A soybean transcript map: discovery and mapping of single nucleotide polymorphisms in soybean genes. Genetics. 176:685-696.
MULTIPLEX SNP ANALYSIS TO DETECT SINGLE BASE EXTENSION PRODUCTS - (Abstract Only)
MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4 - (Abstract Only)
MOLECULAR BEACONS TO SELECT FOR SCN RESISTANCE AT RHG1 AND RHG4 - (Abstract Only)
Hofmann, N.E., Arelli, P.R., Matthews, B.F., Quigley, C.V., Cregan, P.B. 2002. Molecular beacons to select for scn resistance at rhg1 and rhg4. Biennial Conference on Molecular and Cellular Biology of the Soybean. P. 211.
SINGLE NUCLEOTIDE POLYMORPHISMS (SNPS) IN SOYBEAN: DISCOVERY AND DETECTION. - (Abstract Only)
SINGLE NUCLEOTIDE POLYMORPHISMS (SNPS) IN SOYBEAN GENES, CDNAS, AND RANDOM GENOMIC DNA - (Abstract Only)
DETECTION OF SINGLE NUCLEOTIDE POLYMORPHISMS USING ION-PAIR REVERSE PHASE CHROMATOGRAPHY. - (Abstract Only)
MOLECULAR BEACONS AS A TOOL FOR SINGLE NUCLEOTIDE POLYMORPHISM DETECTION - (Abstract Only)
A SELECTED SCT OF TRINUCLEOTIDE SIMPLE SEQUENCE REPEAT MARKERS FOR SOYBEAN CULTIVAR IDENTIFICATION - (Abstract Only)
SINGLE NUCLEOTIDE POLYMORPHISMS (SNPS) IN SOYBEAN GENES, ESTS, AND RANDOM GENOMIC SEQUENCE - (Abstract Only)
SOYBEAN CULTIVAR IDENTIFICATION WITH TRINUCLEOTIDE SIMPLE SEQUENCE R EPEAT MARKERS - (Abstract Only)
ADVANCES IN DNA MARKERS - (Abstract Only)
A SELECTED SET OF TRINUCLEOTIDE SIMPLE SEQUENCE REPEAT MARKERS FOR SOYBEAN VARIETY IDENTIFICATION - (Peer Reviewed Journal)
A DENATURING POLYACRYLAMIDE GEL SYSTEM FOR HIGH THROUGHPUT ANALYSIS OF SIMPLE SEQUENCE REPEAT (SSR) DNA MARKERS - (Abstract Only)
SIMPLE SEQUENCE REPEAT DNA MARKERS ANALYSIS - (Book / Chapter)
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