Renee Corpuz
Tropical Pest Genetics and Molecular Biology Research Unit
Biological Science Technician
Phone: (808) 959-4335
Fax:
(Employee information on this page comes from the REE Directory. Please contact your front office staff to update the REE Directory.)
Publications
(Clicking on the reprint icon
will take you to the publication reprint.)
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otb: an Automated HiC/HiFi Pipeline Assembles the Prosapia bicincta Genome
- (Peer Reviewed Journal)
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Molik, D.C., Stahlke, A., Sharma, S.P., Corpuz, R.L., Kauwe, A.N., Schrader, J.E., Mason, C.J., Sim, S.B., Geib, S.M. 2024. otb: an Automated HiC/HiFi Pipeline Assembles the Prosapia bicincta Genome. Genes, Genomes, and Genomics. 14(7). https://doi.org/10.1093/g3journal/jkae129.
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Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua(Diptera: Tephritidae)
- (Peer Reviewed Journal)
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Sim, S.B., Congrains, C., Velasco-Cuervo, S., Corpuz, R.L., Kauwe, A.N., Scheffler, B.E., Geib, S.M. 2024. Genome report: chromosome-scale genome assembly of the West Indian fruit fly Anastrepha obliqua(Diptera: Tephritidae). G3, Genes/Genomes/Genetics. 14(4). https://doi.org/10.1093/g3journal/jkae024.
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A unified protocol for CRISPR/Cas9-mediated gene knockout in tephritid fruit flies led to the recreation of white eye and white puparium phenotypes in the melon fly
- (Peer Reviewed Journal)
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Paulo, D., Cha, A.Y., Kauwe, A.N., Curbelo, K.M., Corpuz, R.L., Simmonds, T.J., Sim, S.B., Geib, S.M. 2022. A unified protocol for CRISPR/Cas9-mediated gene knockout in tephritid fruit flies led to the recreation of white eye and white puparium phenotypes in the melon fly. Journal of Economic Entomology. 115(6):2110-2115. https://doi.org/10.1093/jee/toac166.
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HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly
- (Peer Reviewed Journal)
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Sim, S.B., Corpuz, R.L., Simmonds, T.J., Geib, S.M. 2022. HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly. Biomed Central (BMC) Genomics. 23. Article 157. https://doi.org/10.1186/s12864-022-08375-1.
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The USDA-ARS Ag100Pest Initiative: High-quality genome assemblies for agricultural pest Arthropod research
- (Peer Reviewed Journal)
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Childers, A.K., Geib, S.M., Sim, S.B., Poelchau, M.F., Coates, B.S., Simmonds, T.J., Scully, E.D., Smith, T.P.L., Childers, C., Corpuz, R.L., Hackett, K.J., Scheffler, B.E. 2021. The USDA-ARS Ag100Pest Initiative: High-quality genome assemblies for agricultural pest insect research. Insects. 12(7):626. https://doi.org/10.3390/insects12070626.
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