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Seonwoo Kim
Environmental Microbial & Food Safety Laboratory
Post Doc (Microbiologist)

Phone: (301) 504-6026
Fax:

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Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Escherichia coli isolated from dairy animal feces encoding fosA7.5, conferring resistance to the reserve group antibiotic Fosfomycin Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Kim, S., Van Kessel, J.S. 2024. Escherichia coli isolated from dairy animal feces encoding fosA7.5, conferring resistance to the reserve group antibiotic Fosfomycin. Foodborne Pathogens and Disease. 10: e0132. https://doi.org/10.1089/fpd.2023.0132.
Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Salaheen, S., Kim, S., Van Kessel, J.S. 2024. Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals. PLOS ONE. 10:e0296514. https://doi.org/10.1371/journal.pone.0296514.
Microdiversity of Salmonella Kentucky during an outbreak in a dairy herd Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Karns, J., Van Kessel, J.S., Haley, B.J. 2024. Microdiversity of Salmonella Kentucky during an outbreak in a dairy herd. Foodborne Pathogens and Disease. 21(5): e0090. https://doi.org/10.1089/fpd.2023.0090.
Genome-wide analysis of Escherichia coli isolated from dairy animals identifies virulence factors and genes enriched in multidrug-resistant strains Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Kim, S., Salaheen, S., Hovingh, E., Van Kessel, J.S. 2023. Genome-wide analysis of Escherichia coli isolated from dairy animals identifies virulence factors and genes enriched in multidrug-resistant strains. Antibiotics. 12(10): e1559. https://doi.org/10.3390/antibiotics12101559.
Genomic diversity of antimicrobial-resistant and Shiga toxin gene-harboring non-O157 Escherichia coli from dairy calves Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Springer, H., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2023. Genomic diversity of antimicrobial-resistant and Shiga toxin gene-harboring non-O157 Escherichia coli from dairy calves. Journal of Global Antimicrobial Resistance. 33:164-170. https://doi.org/10.1016/j.jgar.2023.02.022.
Characterization of antimicrobial resistance genes and virulence factors in the genomes of Escherichia coli ST69 isolates from preweaned dairy calves and their phylogenetic relationship with poultry and human clinical strains Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Springer, H., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2023. Characterization of antimicrobial resistance genes and virulence factors in the genomes of Escherichia coli ST69 isolates from preweaned dairy calves and their phylogenetic relationship with poultry and human clinical strains. Microbial Drug Resistance. https://doi.org/10.1089/mdr.2022.0266.
Large scale genomic analysis identifies antimicrobial resistant and potentially pathogenic escherichia coli from dairy calves at commercial settings - (Abstract Only)
Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro during infection of bovine epithelial cells Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro during infection of bovine epithelial cells. BMC Genomics. https://doi.org/10.1186/s12864-022-08725-z.
Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells. BMC Genomics. https://doi.org/10.1186/s12864-022-08725-z.
RNA-Seq reveals differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells - (Abstract Only)
Genomic characterization of antimicrobial-resistant Escherichia coli isolated from dairy operations Reprint Icon - (Peer Reviewed Journal)
Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Genomic characterization of antimicrobial-resistant Escherichia coli isolated from dairy operations. Journal of Global Antimicrobial Resistance. https://doi.org.
Virulome and genome analyses identifies associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Kim, S., Salaheen, S., Hovingh, E., Van Kessel, J.S. 2022. Virulome and genome analyses identifies associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves. PLoS ONE. 17(3):0265445. https://doi.org/10.1371/journal.pone.0265445.
Draft genome sequence of an Escherichia coli ST38 strain isolated from dry cow feces on a commercial dairy operation Reprint Icon - (Peer Reviewed Journal)
Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Draft genome sequence of an Escherichia coli ST38 strain isolated from dry cow feces on a commercial dairy operation. Microbiology Resource Announcements. https://doi.org/10.1128.
Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland Reprint Icon - (Peer Reviewed Journal)
Slowey, R., Kim, S., Prendergast, D., Madigan, G., Van Kessel, J.S., Haley, B.J. 2021. Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland. Zoonoses and Public Health. (10):1011. https://doi.org/10.1111/zph.12884.
Genome sequences of antibiotic-resistant Escherichia coli isolated from veal valves in the United States Reprint Icon - (Peer Reviewed Journal)
Kim, S., Van Kessel, J.S., Haley, B.J. 2021. Genome sequences of antibiotic-resistant Escherichia coli isolated from veal valves in the United States. Journal of Global Antimicrobial Resistance. https://doi.org/10.1016/j.jgar.2021.04.024.
Microbial communities and resistomes of young calf feces - (Abstract Only)
Large scale genome-wide analysis identifies characteristics of multidrug-resistant Escherichia coli potentially associated with persistence in the dairy calf gut - (Abstract Only)
Metagenomic analysis of the microbial communities and resistomes of feces from veal calves Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2020. Metagenomic analysis of the microbial communities and resistomes of feces from veal calves. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2020.609950.