Daniel Schlatter
Research Microbiologist
Office Phone: (612) 626-2180

Personal Background

Publications

Disciplinary Areas

Soil Microbiology
Agricultural Microbiomes
Metagenomics

Current Research Focus

Alfalfa Microbiomes
Impacts of Manure Amendments on Soil and Plant Microbiomes

• Publications

  • (Clicking on the reprint icon will take you to the publication reprint.)
  • Plant community richness and foliar fungicides impact antibiotic inhibition, resistance, and resource use traits among soil Streptomyces-(Peer Reviewed Journal)
    
    
  • Eight years in the soil: temporal dynamics of wheat-associated bacterial communities under dryland and irrigated conditions-(Peer Reviewed Journal)
    
    
  • Interactive transcriptome analyses of Northern Wild Rice (Zizania palustris L.) and Bipolaris oryzae show convoluted communications during the early stages of fungal brown spot development-(Peer Reviewed Journal)
    Castell-Miller, C.V., Kono, T., Ranjan, A., Schlatter, D.C., Samac, D.A., Kimball, J.A. 2024. Interactive transcriptome analyses of Northern Wild Rice (Zizania palustris L.) and Bipolaris oryzae show convoluted communications during the early stages of fungal brown spot development. Frontiers in Plant Science. 15. Article number 1350281. https://doi.org/10.3389/fpls.2024.1350281.
    
  • A metagenomics study unveils microbial species and diversity in Northern Wild Rice (Zizania palustris L.) leaves and the effect of associated factors-(Abstract Only)
    Castell-Miller, C.V., Schlatter, D.C., Samac, D.A., Kimball, J.A. 2024. A metagenomics study unveils microbial species and diversity in Northern Wild Rice (Zizania palustris L.) leaves and the effect of associated factors. American Phytopathological Society, July 27-30, 2024, Memphis, Tennessee.
    
  • Rhizosphere and root community analysis of oomycetes associated with poor alfalfa (Medicago sativa) seedling establishment -(Peer Reviewed Journal)
    Larsen, L., Schlatter, D.C., Nimpoeno, J., Hines-Snider, C., Samac, D.A. 2023. Rhizosphere and root community analysis of oomycetes associated with poor alfalfa (Medicago sativa) seedling establishment. Phytobiomes Journal. 7(4):526-537. https://doi.org/10.1094/PBIOMES-02-23-0005-R.
    
  • Abiotic and biotic drivers of soil fungal communities in response to dairy manure amendment -(Peer Reviewed Journal)
    Schlatter, D.C., Gamble, J.D., Castle, S.C., Rogers, J., Wilson, M. 2023. Abiotic and biotic drivers of soil fungal communities in response to dairy manure amendment. Applied and Environmental Microbiology. 89(6). Article e01931-22. https://doi.org/10.1128/aem.01931-22.
    
  • Disease-induced assemblage of the rhizosphere fungal community in successive plantings of wheat -(Peer Reviewed Journal)
    Yin, C., Schlatter, D.C., Hagerty, C., Hulbert, S.H., Paulitz, T.C. 2023. Disease-induced assemblage of the rhizosphere fungal community in successive plantings of wheat. Phytobiomes Journal. 7 (1):100-112. https://doi.org/10.1094/PBIOMES-12-22-0101-R.
    
  • Abiotic and biotic filters determine the response of soil bacterial communities to manure amendment -(Peer Reviewed Journal)
    Schlatter, D.C., Gamble, J.D., Castle, S., Rogers, J., Wilson, M. 2022. Abiotic and biotic filters determine the response of soil bacterial communities to manure amendment. Applied Soil Ecology. 180. Article 104618. https://doi.org/10.1016/j.apsoil.2022.104618.
    
  • Harnessing soil microbiomes for camelina growth in low nitrogen inputs -(Abstract Only)
    Yin, C., Barnes, E., Schlatter, D.C., Tringe, S.G., Paulitz, T.C. 2022. Harnessing soil microbiomes for camelina growth in low nitrogen inputs [abstract]. American Phytopathological Society Pacific Division Meeting, June 22-24, 2022. https://doi.org/10.1094/PHYTO-112-8-S2.22.
    
  • Are microbial communities indicators of soil health in a dryland wheat cropping system? -(Peer Reviewed Journal)
    Schlatter, D.C., Hansen, J.C., Carlson, B.R., Leslie, I.N., Huggins, D.R., Paulitz, T.C. 2022. Are microbial communities indicators of soil health in a dryland wheat cropping system? Applied Soil Ecology. 170. Article 104302. https://doi.org/10.1016/j.apsoil.2021.104302.
    
  • Soil microbial diversity and activity linked to crop yield and quality in a dryland organic wheat production system-(Other)
    Reardon, C.L., Hagerty, C., Klarer, E.R., Klein, A., Machado, S., Melle, C., Paulitz, T.C., Larry, P., Schlatter, D.C., Wuest, S.B. 2021. Soil microbial diversity and activity linked to crop yield and quality in a dryland organic wheat production system. Electronic Publication. Available: https://www.youtube.com/watch?v=E-sqaGpNfKo.
    
  • Impacts of lime application on soil bacterial microbiome in dryland wheat soil in the Pacific Northwest -(Peer Reviewed Journal)
    Yin, C., Schlatter, D.C., Kroese, D., Paulitz, T.C., Hagerty, C. 2021. Impacts of lime application impacts on the soil bacterial microbiome in dryland wheatacid soils in the Pacific Northwest. Applied Soil Ecology. 21(1680:104113. https://doi.org/10.1016/j.apsoil.2021.104113.
    
  • Responses of soil fungal communities to lime application in wheat fields in the Pacific Northwest -(Peer Reviewed Journal)
    Yin, C., Schlatter, D.C., Kroese, D., Paulitz, T.C., Hagerty, C. 2021. Responses of soil fungal communities to lime application in wheat fields in the Pacific Northwest. Frontiers in Microbiology. 12. Article 576673. https://doi.org/10.3389/fmicb.2021.576763.
    
  • Impacts of cover crops and nitrogen fertilization on agricultural soil fungal and bacterial communities -(Peer Reviewed Journal)
    Castle, S.C., Samac, D.A., Gutknecht, J.L., Sadowsky, M.J., Rosen, C.J., Schlatter, D.C., Kinkel, L.L. 2021. Impacts of cover crops and nitrogen fertilization on agricultural soil fungal and bacterial communities. Plant and Soil. https://doi.org/10.1007/s11104-021-04976-z.
    
  • Wheat rhizosphere community selection reveals bacteria associated with reduced root disease -(Peer Reviewed Journal)
    Yin, C., Vargas, J.M., Schlatter, D.C., Hagerty, C., Hulbert, S., Paulitz, T.C. 2021. Wheat rhizosphere community selection reveals bacteria associated with reduced root disease. Microbiome. 9. Article 86. https://doi.org/10.1186/s40168-020-00997-5.
    
  • Efficiency and profitability of fungicides in controlling Bipolaris diseases and enhancing grain yield in cultivated wild rice (Zizania palustris) -(Peer Reviewed Journal)
    Castell-Miller, C.V., Schlatter, D.C., Samac, D.A. 2021. Efficiency and profitability of fungicides in controlling Bipolaris diseases and enhancing grain yield in cultivated wild rice (Zizania palustris). Crop Protection. 141. Article 105455. https://doi.org/10.1016/j.cropro.2020.105455.
    
  • Bacterial communities of soil and earthworm casts of native Palouse Prairie remnants and no-till wheat cropping systems -(Peer Reviewed Journal)
    Schlatter, D.C., Baugher, C., Kahl, K., Johnson-Maynard, J.L., Huggins, D.R., Paulitz, T.C. 2019. Bacterial communities of soil and earthworm casts of native Palouse Prairie remnants and no-till wheat cropping systems. Soil Biology and Biochemistry. 139. https://doi.org/10.1016/j.soilbio.2019.107625.
    
  • Soil acidification modifies soil depth-microbiome relationships in a no-till wheat cropping system. -(Peer Reviewed Journal)
    Schlatter, D.C., Kahl, K., Carlson, B.R., Huggins, D.R., Paulitz, T.C. 2020. Soil acidification modifies soil depth-microbiome relationships in a no-till wheat cropping system.. Soil Biology and Biochemistry. 149. Article 107939. https://doi.org/10.1016/j.soilbio.2020.107939.
    
  • Core rhizosphere microbiomes of dryland wheat are influenced by location and land use history -(Peer Reviewed Journal)
    Schlatter, D.C., Yin, C., Hulbert, S., Paulitz, T.C. 2020. Core rhizosphere microbiomes of dryland wheat are influenced by location and land use history. Applied and Environmental Microbiology. 86(5):e02135-19. https://doi.org/10.1128/AEM.02135-19.
    
  • Inhibitory and nutrient use phenotypes among coexisting Fusarium and Streptomyces populations suggest local coevolutionary interactions in soil -(Peer Reviewed Journal)
    Essarioui, A., LeBlanc, N.R., Otto-Hanson, L., Schlatter, D.C., Kistler, H.C., Kinkel, L.L. 2020. Inhibitory and nutrient use phenotypes among coexisting Fusarium and Streptomyces populations suggest local coevolutionary interactions in soil. Environmental Microbiology. 22(3):976-985. https://doi.org/10.1111/1462-2920.14782.
    
  • Mycological insights into wetland fungal communities: The mycobiome of Camassia in the Pacific Northwest -(Peer Reviewed Journal)
    Freed, G., Schlatter, D.C., Paulitz, T.C., Dugan, F.M. 2019. Mycological insights into wetland fungal communities: The mycobiome of Camassia in the Pacific Northwest. Phytobiomes Journal. 2019(3):286-299. https://doi.org/10.1094/PBIOMES-04-19-0022-R.
    
  • Common and unique rhizosphere microbial communities of wheat and canola in a semiarid Mediterranean environment -(Peer Reviewed Journal)
    Schlatter, D.C., Hansen, J.C., Schillinger, W.F., Sullivan, T.S., Paulitz, T.C. 2019. Common and unique rhizosphere microbial communities of wheat and canola in a semiarid Mediterranean environment. Soil Biology and Biochemistry. 144:170-181. https://doi.org/10.1016/j.apsoil.2019.07.010.
    
  • Mining the drilosphere: bacterial communities and denitrifier abundance in a no-till wheat cropping system -(Peer Reviewed Journal)
    Schlatter, D.C., Reardon, C.L., Maynard-Johnson, J.L., Brooks, E., Kahl, K.B., Norby, J., Huggins, D.R., Paulitz, T.C. 2019. Mining the drilosphere: bacterial communities and denitrifier abundance in a no-till wheat cropping system. Frontiers in Microbiology. 10:1339. https://doi.org/10.3389/fmicb.2019.01339.
    
  • Biosolids and tillage practices influence soil bacterial communities in dryland wheat -(Peer Reviewed Journal)
    Schlatter, D.C., Paul, N.C., Shah, D.H., Schillinger, W.F., Bary, A.L., Sharratt, B.S., Paulitz, T.C. 2019. Biosolids and tillage practices influence soil bacterial communities in dryland wheat. Microbial Ecology. 78(3):737-752. https://doi.org/10.1007/s00248-019-01339-1.
    
  • Arbuscular mycorrhizal fungal communities in organic and conventional onion crops in the Columbia Basin of the Pacific Northwest United States -(Peer Reviewed Journal)
    Knerr, A., Wheeler, D., Schlatter, D.C., Sharma-Poudyal, D., Du Toit, L.J., Paulitz, T.C. 2019. Arbuscular mycorrhizal fungal communities in organic and conventional onion crops in the Columbia Basin of the Pacific Northwest United States. Phytobiomes Journal. 2(4):194-207. https://doi.org/10.1094/PBIOMES-05-18-0022-R.
    
  • Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest -(Peer Reviewed Journal)
    Schroeder, K.L., Schlatter, D.C., Paulitz, T.C. 2018. Location-dependent impacts of liming and crop rotation on bacterial communities in acid soils of the Pacific Northwest. Applied Soil Ecology. 130:59-68. https://doi.org/10.1016/j.apsoil.2018.05.019.
    
  • Dust-associated microbiomes from dryland wheat fields differ with tillage practice and biosolids application-(Peer Reviewed Journal)
    Schlatter, D.C., Schillinger, W.F., Bary, A.I., Sharratt, B.S., Paulitz, T.C. 2018. Dust-associated microbiomes from dryland wheat fields differ with tillage practice and biosolids application. Atmospheric Environment. 185:29-40.
    
  • Fungal community composition and diversity vary with soil depths and landscape position in a no-till wheat cropping system -(Peer Reviewed Journal)
    Schlatter, D.C., Kahl, K., Carlson, B.R., Huggins, D.R., Paulitz, T.C. 2018. Fungal community composition and diversity vary with soil depths and landscape position in a no-till wheat cropping system. FEMS Microbiology Ecology. 94:1-15. https://doi.org/10.1093/femsec/fiy098.
    
  • Succession of fungal and oomycete communities in glyphosate-killed wheat roots-(Peer Reviewed Journal)
    Schlatter, D.C., Burke, I., Paulitz, T.C. 2018. Succession of fungal and oomycete communities in glyphosate-killed wheat roots. Phytopathology. 108:582-594.
    
  • Location, root proximity, and glyphosate-use history modulate the effects of glyphosate on fungal community networks of wheat -(Peer Reviewed Journal)
    Schlatter, D.C., Yin, C., Hulbert, S., Burke, I., Paulitz, T.C. 2017. Location, root proximity, and glyphosate-use history modulate the effects of glyphosate on fungal community networks of wheat. Microbial Ecology. https://doi.org/10.1007/s00248-017-1113-9.
    
  • Subtle impacts of repeated glyphosate use on wheat-associated bacteria are small and depend on glyphosate use history -(Peer Reviewed Journal)
    Schlatter, D.C., Yin, C., Hulbert, S., Burke, I., Paulitz, T.C. 2017. Subtle impacts of repeated glyphosate use on wheat-associated bacteria are small and depend on glyphosate use history. Applied and Environmental Microbiology. https://doi.10.1128/AEM.01354-17.
    
  • Biosolids and conservation tillage: Impacts on soil fungal communities in dryland wheat-fallow cropping systems-(Peer Reviewed Journal)
    Schlatter, D.C., Schillinger, W.F., Bary, A.I., Sharratt, B.S., Paulitz, T.C. 2017. Biosolids and conservation tillage: Impacts on soil fungal communities in dryland wheat-fallow cropping systems. Soil Biology and Biochemistry. 115:556-567.
    
  • Long-term no-Till: A major driver of fungal communities in dryland wheat cropping systems -(Peer Reviewed Journal)
    Sharma-Poudyal, D., Schlatter, D.C., Yin, C., Hulbert, S., Paulitz, T.C. 2017. Long-term no-Till: A major driver of fungal communities in dryland wheat cropping systems. PLoS One. https://doi.org/10.1371/journal.pone.0184611.
    
  • Disease suppressive soils: New insights from the soil microbiome -(Peer Reviewed Journal)
    Paulitz, T.C., Schlatter, D.C., Kinkel, L., Thomashow, L.S., Weller, D.M. 2017. Disease suppressive soils: New insights from the soil microbiome. Phytopathology. 107(11):1284-1297. https://doi.org/10.1094/PHYTO-03-17-0111-RVW.
    
  • First report of Leptosphaeria maculans and Leptosphaeria biglobosa, causal agents of blackleg, on canola in Washington State-(Peer Reviewed Journal)
    Paulitz, T.C., Knerr, A.J., Carmody, S.M., Schlatter, D.C., Sowers, K., Derie, M.L., Du Toit, L.J. 2017. First report of Leptosphaeria maculans and Leptosphaeria biglobosa, causal agents of blackleg, on canola in Washington State. Plant Disease. 101:504-505.
    
  • A systems framework for identifying candidate microbial assemblages for disease management-(Peer Reviewed Journal)
    Poudel, A., Jumpponen, A., Schlatter, D.C., Paulitz, T.C., Mcspadden Gardener, B., Kinkel, L.L., Garrett, K.A. 2016. A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology. 106:1083-1096.