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ARS Home » Plains Area » Lincoln, Nebraska » Agroecosystem Management Research » People & Locations » Md Shamimuzzaman (Shamim)
Md Shamimuzzaman (Shamim)
Agroecosystem Management Research
Computational Biologist

Phone: (217) 721-2545
Fax: (402) 472-4020

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Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Mutation and sequencing-based cloning and functional studies of the rust resistance gene R11 in sunflower (Helianthus annuus) Reprint Icon - (Peer Reviewed Journal)
Shamimuzzaman, M., Ma, G., Underwood, W., Qi, L. 2023. Mutation and sequencing-based cloning and functional studies of the rust resistance gene R11 in sunflower (Helianthus annuus). Plant Journal. 115(2):480-493. https://doi.org/10.1111/tpj.16238.
The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato Reprint Icon - (Peer Reviewed Journal)
Padmanabhan, C., Zheng, Y., Shamimuzzaman, M., Fei, Z., Ling, K. 2022. The tomato yellow leaf curl virus C4 protein alters the expression of plant developmental genes correlating to leaf upward cupping phenotype in tomato. PLOS ONE. 17(5):e0257936. https://doi.org/10.1371/journal.pone.0257936.
Managing the spread of Tomato brown rugose fruit virus and Cucumber green mottle mosaic virus using chemical disinfectants Reprint Icon - (Abstract Only)
Chanda, B., Shamimuzzaman, M., Gilliard, A.C., Ling, K. 2021. Managing the spread of Tomato brown rugose fruit virus and Cucumber green mottle mosaic virus using chemical disinfectants. Meeting Abstract. 11:S2.142. https://doi.org/10.1094/PHYTO-111-10-S2.1.
Effectiveness of disinfectants against the spread of tobamoviruses: tomato brown rugose fruit virus and cucumber green mottle mosaic virus Reprint Icon - (Peer Reviewed Journal)
Chanda, B., Shamimuzzaman, M., Gilliard, A.C., Ling, K. 2021. Effectiveness of disinfectants against the spread of tobamoviruses: tomato brown rugose fruit virus and cucumber green mottle mosaic virus. Virology Journal. 18:7. https://doi.org/10.1186/s12985-020-01479-8.
Map and sequence-based chromosome walking towards cloning of the male fertility restoration gene Rf5 linked to R11 in sunflower Reprint Icon - (Peer Reviewed Journal)
Ma, G., Long, Y., Song, Q., Talukder, Z.I., Shamimuzzaman, M., Qi, L. 2021. Map and sequence-based chromosome walking towards cloning of the male fertility restoration gene Rf5 linked to R11 in sunflower. Scientific Reports. https://doi.org/10.1038/s41598-020-80659-6.
Deep sequencing of small RNAs in the whitefly, Bemisia tabaci revealed novel microRNAs potentially associated with begomovirus acquisition and transmission Reprint Icon - (Peer Reviewed Journal)
Hasegawa, D.K., Shamimuzzaman, M., Chen, W., Simmons, A.M., Fei, Z., Ling, K. 2020. Deep sequencing of small RNAs in the whitefly, Bemisia tabaci revealed novel microRNAs potentially associated with begomovirus acquisition and transmission. Insects. 11(9):562. https://doi.org/10.3390/insects11090562.
The regulatory landscape of early maize inflorescence development Reprint Icon - (Peer Reviewed Journal)
Parvathaneni, R.K., Bertolini, E., Shamimuzzaman, M., Vera, D., Lung, P., Rice, B.R., Brown, P.J., Lipka, A.E., Bass, H.W., Eveland, A.L. 2020. The regulatory landscape of early maize inflorescence development. Genome Biology. 21:165. https://doi.org/10.1186/s13059-020-02070-8.
Small RNA profiling of the whitefly, Bemisia tabaci MEAM1 in response to feeding on tomato infected with Tomato yellow leaf curl virus - (Abstract Only)
Genome-wide profiling of piRNAs in the whitefly, Bemisia tabaci reveals cluster distribution and potential association with begomovirus transmission Reprint Icon - (Peer Reviewed Journal)
Shamimuzzaman, M., Hasegawa, D.K., Chen, W., Simmons, A.M., Fei, Z., Ling, K. 2019. Genome-wide profiling of piRNAs in the whitefly, Bemisia tabaci reveals cluster distribution and potential association with begomovirus transmission. PLoS One. 14(3):e0213149. https://doi.org/10.1371/Journal.pone.0213149.
Understanding the transmissibility of cucumber green mottle mosaic virus in watermelon seeds and seed health assays Reprint Icon - (Peer Reviewed Journal)
Sui, X., Li, R., Shamimuzzaman, M., Wu, Z., Ling, K. 2018. Understanding the transmissibility of cucumber green mottle mosaic virus in watermelon seeds and seed health assays. Plant Disease. https://doi.org/10.1094/pdis-10-18-1787-re.
Genome-wide profiles of miRNAs and piRNAs in whitefly Bemisia tabaci in response to feeding on tomato plants infected with tomato yellow leaf curl virus - (Abstract Only)
Hasegawa, D.K., Shamimuzzaman, M., Chen, W., Simmons, A.M., Fei, Z., Ling, K. 2018. Genome-wide profiles of miRNAs and piRNAs in whitefly Bemisia tabaci in response to feeding on tomato plants infected with tomato yellow leaf curl virus [abstract]. 3rd International Whitefly Symposium, Perth, Australia, September 16-19, 2018. p.18.
Genome-wide piRNA profiles of virus transmitting whitefly Bemisia tabaci during feeding on TYLCV-infected tomato Reprint Icon - (Abstract Only)
Shamimuzzaman, M., Hasegawa, D.K., Chen, W., Simmons, A.M., Fei, Z., Ling, K. 2018. Genome-wide piRNA profiles of virus transmitting whitefly Bemisia tabaci during feeding on TYLCV-infected tomato. Phytopathology. 108:S1.74-S1.75. https://doi.org/10.1094/phyto-108-10-s1.1.
MicroRNA profiling of the whitefly bemisia tabaci in response to feeding on tomato infected with tomato yellow leaf curl virus Reprint Icon - (Abstract Only)
Hasegawa, D.K., Shamimuzzaman, M., Chen, W., Simmons, A.M., Fei, Z., Ling, K. 2018. MicroRNA profiling of the whitefly bemisia tabaci in response to feeding on tomato infected with tomato yellow leaf curl virus. Phytopathology. 180:s1.260-s1.261. https://doi.org/10.1094/phyto-108-10-s1.240.
Survey of potato viruses and viroids in Heilongjiang province of China by sRNA deep sequencing and VirusDetect - (Abstract Only)
The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ringspot virus resistance locus Reprint Icon - (Peer Reviewed Journal)
Wu, S., Shamimuzzaman, M., Sun, H., Salse, J., Sui, X., Wilder, A.J., Wu, Z., Levi, A., Xu, Y., Ling, K., Fei, Z. 2017. The bottle gourd genome provides insights into Cucurbitaceae evolution and facilitates mapping of a Papaya ringspot virus resistance locus. Plant Journal. 92:963-975. https://doi.org/10.1111/tpj.13722.
Understanding the mechanism of resistance breaking on tomato by Tomato mottle mosaic virus Reprint Icon - (Abstract Only)
Sui, X., Shamimuzzaman, M., Zheng, Y., Simmons, A.M., Fei, Z., Wu, Z., Ling, K. 2017. Understanding the mechanism of resistance breaking on tomato by Tomato mottle mosaic virus. American Phytopathological Society Annual Meeting. 107(12S):S5.121. https://doi.org/10.1094/PHYTO-107-12-S5.1.
Functional characterization of the triple gene block 1 (TGB1) gene of Pepino mosaic virus in tomato - (Abstract Only)
Tomato yellow leaf curl virus C4 protein is a determinant of disease phenotype in tomato - (Abstract Only)
Exploring the trans-acting short interfering RNAs (ta-siRNAs) technology for virus control in plants Reprint Icon - (Abstract Only)
Padmanabhan, C., Zheng, Y., Shamimuzzaman, M., Fei, Z., Ling, K. 2017. Exploring the trans-acting short interfering RNAs (ta-siRNAs) technology for virus control in plants. American Phytopathological Society Annual Meeting. 107(12S):S5.91. https://doi.org/10.1094/PHYTO-107-12-S5.1.