Lincoln Cluster Analysis |
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Data file statistics & edits
NLSBA provided NAGP with access to their database for this analysis. There were 13,458 records from animals born from 1976-2007. Of these, 8,972 (66.7%) were ewes and 4,486 (33.3%) were rams. Birth years were unknown for 12.9% of the data. The only data edits needed were for 2 rams that appeared as their own sire. Their sire was converted to unknown. Sires were known for 89.0% of the animals and dams were known for 88.9%. There have been 1,136 sires and 4,501 dams during the lifetime of the database.
Registrations by birth year
The oldest registered animal was born in 1976; registrations did not greatly increase until 1993. The number of registrations by birth year have remained relatively stable since 1994, as shown in Figure 1. Registrations for 2007 are incomplete.
Figure 1. Registrations by Birth Year
Color
For all of the animals in the file, 14% registered were colored and 86% were white. However, this has not remained consistent over time, as shown in Figure 2. Starting in 2002, there has been an explosion of colored
Figure 2. Percent Colored and White Registrations by Birth Year
Birth type
The majority of lambs are born as twins, followed by singles and triplets. Only 0.3% of registered lambs were born as quads or quints. Figure 3 shows the trend over time for single, twin, and triplet registrations. The trend has remained fairly stable over time, but the proportion of singles has increased in recent years.
Figure 3. Birth Type by Birth Year
Breeders
There are 340 breeders in the database. The number of birth years a breeder has registered sheep ranges from 1 to 17, with an average of 3.7 years. The vast majority have only registered sheep for 1 or 2 years, as shown in Figure 4. Conservation of a rare breed requires a careful breeding strategy due to the limited gene pool available from which to select breeding animals. Managing these limited resources is made more difficult if breeders are transient. It is encouraging to see that a fairly large number of breeders have been registering animals for 5+ years.
Figure 4. Number of Birth Years a Breeder has Registered Sheep
Even though there are a lot of breeders entering and leaving the industry each year, the total number of breeders has remained stable since 1994 (Figure 5). Although the breed isn't expanding, it also isn't shrinking.
Figure 5. Number of Breeders by Birth Year
Exchange of genetics
While mapping out the current location of active rams, defined as those who sired lambs in 2006 and/or 2007, it became clear that the majority of rams were not being retained by their breeders. Of the 149 active rams, 116 (77.9%) were owned by someone other than the person that bred them. This is a surprisingly large exchange of genetics. Not only are the rams being exchanged, they are moving throughout the country. Eighty-six of the 149 rams are owned in a different state than the one in which they were born.
The 2006-2007 lamb crop is primarily concentrated in the Northeast and the eastern section of the Midwest with another group in the
Current breeding population
There were 149 rams and 722 ewes that produced the lambs born in 2006 and 2007 (to date). The birth year of the rams ranged from 1998 to 2006. There were 5 2006 born rams that have already had offspring in 2007, indicating a relatively young age at puberty for such a large-framed breed. Table 1 shows the number of lambs these rams sired in 2006-2007. The industry is using a large number of rams, with the most dominant ram siring only 60 lambs in this period of time; the next highest had 37 lambs.
Table 1. Number of Rams that Sired 2006-2007 Born Lambs
The ewes that produced the 2006-2007 lamb crop ranged in birth year from 1994 to 2006. There were 5 2006 born ewe lambs that have already had lambs in 2007, indicating age at puberty is early on the female side as well.
The pedigree was traced back until ancestors were unknown. The final pedigree file contained 13,558 animals. Since the breed registry is relatively new, the pedigrees are shallow and inbreeding levels are likely higher than shown here. The average inbreeding across the breed was 2.7%, with a range from 0 to 53.1%. The frequency distribution of inbreeding percentage is shown in Table 2. The vast majority have an inbreeding coefficient of 0, but some of these are animals with unknown pedigrees, such as foundation animals.
Table 2. Frequency Distribution of Inbreeding Across
The average inbreeding level of animals born so far in 2007 is 4.4% with 68.6% of those animals having an inbreeding coefficient greater than 0. The inbreeding trend and percent of inbred animals is shown in Figure 6. Average inbreeding has remained stable over the past 7 years even as the percent of inbred animals has steadily increased.
Figure 6. Inbreeding Trend and Percent Inbred Animals by Birth Year
Cluster analysis
The ever-present decision facing the NAGP is which males to collect for the gene bank. In order to capture the maximum genetic diversity of each breed, we try to sample lowly related males from across the population. The lowest related males should have the fewest alleles in common, allowing us to capture all (or most) of the allelic diversity within the breed. Pedigree relationship data is used to group the available pool of animals into groups that are similar to each other (highly related) and lowly related to other groups. Then, individual males within each cluster can be targeted for collection. If chosen males are not available, a substitute from the same cluster can be used instead.
The cluster analysis included the relationship between the 149 rams that sired the 2006-2007 lamb crop. These are the males assumed to be available from which to collect. If they are not available, it is known they have offspring, so a son might be available as a replacement. The analysis resulted in 16 distinct groups of rams. The average relationship between the 149 rams was 2.4%. Table 3 shows the average relationship within each of the 16 clusters.
Table 3. Within Cluster Relationship of 149
All of the clusters have a high average relationship with the exception of cluster 16. To put the relationships into perspective, a 0.25 relationship is the equivalent of a half-sib and 0.125 is equivalent to a cousin. Cluster 16 is a cluster where the animals that don't fit anywhere else got placed. They would be expected to have a high level of genetic diversity and should be sampled heavier than other clusters.
As stated earlier, the clusters not only have a high degree of relatedness within each cluster, but a low degree of relatedness between clusters. This can be seen in Table 4.
Table 4. Between Cluster Relationship of 149
Appendix 1 is a list of rams, their cluster, and current owner.
Appendix 1. Rams by Cluster and Owner
ID | Cluster | Owner | |
1 | RACHAEL CAVENER | MO | |
5981 | 1 | | OH |
6242 | 1 | HARVEY WARRICK & ED HAMMETT | MI |
6670 | 1 | DUSTI VANDERWENDE | DE |
6672 | 1 | MEEK FAMILY | RI |
6718 | 1 | MCKENNA MATER | MI |
7070 | 1 | ZACHARY TODD & CAMERON MILLINIX | MD |
7380 | 1 | ADAM GRAYBEAL | MD |
7480 | 1 | K BENJAMIN | MI |
7886 | 1 | JESSICA SHELBY | IN |
88313 | 1 | | OH |
89029 | 1 | JOSEPH H & CAROL J HADDOCK | VT |
7328 | 2 | RI | |
7591 | 2 | MINDY GIBSON | MO |
7618 | 2 | BRUCE & ELIZABETH NEWTON | NH |
88991 | 2 | BEVERLY T BOERSMA | IL |
90399 | 2 | WENDY CAMERON | MA |
6621 | 3 | SHARON PRIBBERNOW | WI |
6624 | 3 | JOYCE & GERALD COGGINS & FAMILY | NC |
6625 | 3 | JAN BRASH | ND |
6693 | 3 | BILL & DIANE DUBRAY | WA |
6695 | 3 | PENNY DODDS | OR |
6953 | 3 | BILL & DIANE DUBRAY | WA |
7191 | 3 | PENNY DODDS | OR |
7205 | 3 | CHRISTINE L BAZANT | OR |
7213 | 3 | KAY & DAVID HATCH | IL |
89848 | 3 | WATKINS | WI |
C5697 | 3 | JANE LANDVATTER | WI |
C88759 | 3 | EDWIN & LINDA WISE | WI |
86576 | 4 | PHILIP & LINDSEY REISTER | WA |
89633 | 4 | BEVERLY T BOERSMA | IL |
89635 | 4 | BEVERLY T BOERSMA | IL |
89872 | 4 | LINDSEY REISTER | WA |
5881 | 5 | FRANK & BETTY DAVIS | PA |
6995 | 5 | DAWN LANTZ | WA |
7397 | 5 | KATY CAIN | CA |
88364 | 5 | BOB & SHARRY BONE | NM |
89351 | 5 | | OH |
C6578 | 5 | JOSEPH H & CAROL J HADDOCK | VT |
C88687 | 5 | DONALD E BISCHOF | OR |
C88830 | 5 | BRIAN LARSON | MI |
6266 | 6 | EILEEN P HORDYK | WA |
6268 | 6 | JIM & DONNA LEIN | IA |
6734 | 6 | LAUREN SIMPSON | MT |
7511 | 6 | LAUREN SIMPSON | MT |
87373 | 6 | MIKE CLIFFORD | CA |
88838 | 6 | LORAINE POWELL | CA |
88921 | 6 | JOSEPH H & CAROL J HADDOCK | VT |
89608 | 6 | JIM & DONNA LEIN | IA |
5955 | 7 | RACHAEL CAVENER | MO |
6603 | 7 | EDWIN & LINDA WISE | WI |
6750 | 7 | DUSTI VANDERWENDE | DE |
6784 | 7 | SAE JIN TROMBLEY | NY |
6988 | 7 | KIERNAN SHEA | NJ |
7242 | 7 | FRANK & BETTY DAVIS | PA |
87260 | 7 | RICHARD CROME | IL |
87438 | 7 | DUSTI VANDERWENDE | DE |
87516 | 7 | BEVERLY T BOERSMA | IL |
88501 | 7 | JIM & DONNA LEIN | IA |
88824 | 7 | BRIAN LARSON | MI |
89487 | 7 | MIKE CLIFFORD | CA |
89489 | 7 | PER PETTERSSON | WA |
89568 | 7 | RACHEL MANNING | MD |
89701 | 7 | WENDY CAMERON | MA |
89729 | 7 | DUSTI VANDERWENDE | DE |
89916 | 7 | ELENA BODE | MD |
89952 | 7 | SHARON PRIBBERNOW | WI |
90208 | 7 | RICHARD CROME | IL |
90371 | 7 | KAYLI MOHR | IL |
89006 | 8 | DONALD E BISCHOF | OR |
89008 | 8 | DIANE KLINGELHOFER | MD |
89619 | 8 | PER PETTERSSON | WA |
89620 | 8 | KAROL WILLIE | OR |
89915 | 8 | K | WV |
6446 | 9 | DR ELIZABETH PANTZER | IN |
6760 | 9 | JENNIFER GARRETT | MI |
6795 | 9 | JENNIFER GARRETT | MI |
7167 | 9 | BOB & SHARRY BONE | NM |
7699 | 9 | NANCY IRLBECK | CO |
88187 | 9 | CHARLOTTE SANFORD-CRANE | MD |
88683 | 9 | TRAVIS COGGINS | NC |
88751 | 9 | JACKMAN | MI |
89268 | 9 | ROY & MYRTLE DOW | CO |
89697 | 9 | GARTH & JANE TEN NAPEL | TX |
89766 | 9 | BRIAN LARSON | MI |
90240 | 9 | JAMIE COLEMAN | CT |
6494 | 10 | CHRISTIANE PAYTON | OR |
6614 | 10 | CHRISTIANE PAYTON | OR |
6973 | 10 | ROBERT LAMOUREUX | CT |
6806 | 11 | CHRISTINE L BAZANT | OR |
7357 | 11 | SUSAN A HANKS | IN |
7362 | 11 | SUSAN A HANKS | IN |
86335 | 11 | SUSAN A HANKS | IN |
90063 | 11 | NAOMI GUNKEL | PA |
6626 | 12 | WATKINS | WI |
6792 | 12 | EDWIN & LINDA WISE | WI |
6919 | 12 | CHRISTIANE PAYTON | OR |
7463 | 12 | CLETUS ZENK FAMILY | MI |
87580 | 12 | WATKINS | WI |
88333 | 12 | HARVEY K WARRICK | MI |
88907 | 12 | RICHARD & DIANNE FETTE | IA |
89411 | 12 | NORM PARKER | WI |
89438 | 12 | ROY & MYRTLE DOW | CO |
89806 | 12 | LAUREN SIMPSON | MT |
90781 | 12 | SUSAN A HANKS | IN |
87582 | 13 | JIM & DONNA LEIN | IA |
89609 | 13 | HAHN | KY |
89745 | 13 | EDWIN & LINDA WISE | WI |
5592 | 14 | HAHN | KY |
6068 | 14 | MIKE CLIFFORD | CA |
6558 | 14 | | OH |
6560 | 14 | LORAINE POWELL | CA |
6568 | 14 | KATY CAIN | CA |
6573 | 14 | ZACHARY TODD & CAMERON MILLINIX | MD |
7312 | 14 | MARKUS, MACKENZIE & MARAN TENNIS | IL |
7316 | 14 | NOAH DART | IL |
7426 | 14 | MIKE CLIFFORD | CA |
7432 | 14 | KELLY WRIGHT | MD |
7620 | 14 | EMMALINE LONG | NY |
6583 | 15 | DIANE KLINGELHOFER | MD |
6785 | 15 | | OH |
6862 | 15 | DAVID POPIELINSKI | NY |
7092 | 15 | JAY & RACHEL FEELEY | VT |
7120 | 15 | SAE JIN TROMBLEY | NY |
7287 | 15 | AUBREY DESJARLAIS | CT |
7337 | 15 | RI | |
5744 | 16 | ROBERT LAMOUREUX | CT |
6334 | 16 | LLOYD & PHYLLIS BURGENER | WI |
6653 | 16 | DAVID POPIELINSKI | NY |
6775 | 16 | MARKUS, MACKENZIE & MARAN TENNIS | IL |
7115 | 16 | ROGER WATKINS | WI |
7175 | 16 | JODI MILSKE FAMILY | WI |
81562 | 16 | HARVEY K WARRICK | MI |
86983 | 16 | JOHN N HARDING | IL |
87158 | 16 | DEBBIE BENDER | WI |
87440 | 16 | WILLIAM & CELINDA BANKHEAD | MD |
87479 | 16 | ROBERT EADE | IL |
88550 | 16 | ANDRE MILLER | ME |
88705 | 16 | DELBERT A KESSI | OR |
89056 | 16 | CODY THOMPSON | WA |
89393 | 16 | JOHN N HARDING | IL |
89461 | 16 | BILL & DIANE DUBRAY | WA |
89462 | 16 | BILL & DIANE DUBRAY | WA |
89528 | 16 | BOB HEGGEMEIER | IL |
89654 | 16 | RALPH GROEFSEMA | ID |
89676 | 16 | AARON W F JOHNSON | OR |
89932 | 16 | JOHN N HARDING | IL |
90076 | 16 | DONALD WOODS | IL |
C7273 | 16 | AI IMPORT | -- |