Research Project: Agricultural Management for Long-Term Sustainability and Soil Health

Location: Soil Management and Sugarbeet Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Characterizing Legacy P and simulating mitigation strategies as part of the USDA Legacy P Project - (Abstract Only)

Undergraduate research in the Andes: Overcoming barriers to developing-country farm-household focused analysis - (Peer Reviewed Journal)

Tomato domestication rather than subsequent breeding events reduces microbial associations related to phosphorus recovery - (Peer Reviewed Journal)
Dixon, M., Afkairin, A., Davis, J., Chitwood-Brown, J., Buchanan, C.M., Ippolitto, J.A., Manter, D.K., Vivanco, J.M. 2024. Tomato domestication rather than subsequent breeding events reduces microbial associations related to phosphorus recovery. Scientific Reports. 14. Article e9934. https://doi.org/10.1038/s41598-024-60775-3.

Global change impacts on mineral nutritional quality of cereal grains: Coordinated datasets and analyses to advance a systems-based understanding - (Peer Reviewed Journal)
Miner, G.L., Stewart, C.E., Delgado, J.A., Ippolito, J.A., Mason, R.E., Haley, S.D., Guttieri, M.J., Ainsworth, E.A., McGrath, J.M., Beebout, S.E. 2024. Global change impacts on mineral nutritional quality of cereal grains: Coordinated datasets and analyses to advance a systems-based understanding. Field Crops Research. 310. Article e109338. https://doi.org/10.1016/j.fcr.2024.109338.

Harnessing phosphorous (P) fertilizer-insensitive bacteria to enhance rhizosphere P bioavailability in legumes - (Peer Reviewed Journal)
Afkarin, A., Dixon, M., Buchanan, C., Ippolito, J.A., Manter, D.K., Davis, J., Vivanco, J.M. 2024. Harnessing phosphorous (P) fertilizer-insensitive bacteria to enhance rhizosphere P bioavailability in legumes. Microorganisms. 12(2). Article e353. https://doi.org/10.3390/microorganisms12020353.

A review of the development and implementation of the critical source area concept: A reflection of Andrew Sharpley’s role in improving water quality - (Peer Reviewed Journal)
McDowell, R.W., Kleinman, P.J., Haygarth, P.M., McGrath, J.M., Smith, D.R., Heathwaite, A.L., Iho, A., Schoumans, O., Nash, D. 2024. A review of the development and implementation of the critical source area concept: A reflection of Andrew Sharpley’s role in improving water quality. Journal of Environmental Quality. https://doi.org/10.1002/jeq2.20551.

Balancing agriculture and environment: Andrew Sharpley’s nutrient, soil and water management legacy - (Review Article)
Flaten, D.N., Kleinman, P.J., Osmond, D. 2024. Balancing agriculture and environment: Andrew Sharpley’s nutrient, soil and water management legacy. Journal of Environmental Quality. https://doi.org/10.1002/jeq2.20547.

The importance of consensus science to managing phosphorus in the environment: SERA-17 and the legacy of Andrew Sharpley - (Peer Reviewed Journal)
Macrae, M., Kleinman, P.J., Osmond, D., Shober, A., Nelson, N. 2024. The importance of consensus science to managing phosphorus in the environment: SERA-17 and the legacy of Andrew Sharpley. Journal of Environmental Quality. https://doi.org/10.1002/jeq2.20546.

Simulating long-term soil carbon storage, greenhouse gas balance, and crop yields in semi-arid cropping systems using DayCent model - (Peer Reviewed Journal)
Bista, P., Hartman, M., Del Grosso, S.J., Thapa, V., Ghimire, R. 2024. Simulating long-term soil carbon storage, greenhouse gas balance, and crop yields in semi-arid cropping systems using DayCent model. Nutrient Cycling in Agroecosystems. https://doi.org/10.1007/s10705-023-10335-4.

A short history of the phosphorus index and Andrew Sharpley’s contributions from inception through development and implementation - (Peer Reviewed Journal)
Osmond, D., Kleinman, P.J., Coale, F., Nelson, N., Bolster, C.H., McGrath, J. 2023. A short history of the phosphorus index and Andrew Sharpley’s contributions from inception through development and implementation. Journal of Environmental Quality. https://doi.org/10.1002/jeq2.20535.

Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia - (Pre-print Publication)
Todd, O.E., Patterson, E.L., Westra, E.P., Nissen, S.J., Lucas Simoes Araujo, A., Kramer, W., Dayan, F.E., Gaines, T.A. 2024. Enhanced metabolic detoxification is associated with fluroxypyr resistance in Bassia scoparia. Plant Direct. 8(1). Article e560. https://doi.org/10.1002/pld3.560.

Soil bacteriome resilience and reduced nitrogen toxicity in tomato by controlled release nitrogen fertilizer compared to urea - (Peer Reviewed Journal)
Rohrbaugh, C.R., Dixon, M.M., Delgado, J.A., Manter, D.K., Vivanco, J.M. 2023. Soil bacteriome resilience and reduced nitrogen toxicity in tomato by controlled release nitrogen fertilizer compared to urea. Applied Microbiology. 3(4):1262-1276. https://doi.org/10.3390/applmicrobiol3040087.

Characterizing and quantifying legacy phosphorus impacts within CEAP watersheds - (Abstract Only)

Shifts of the soil microbiome composition induced by plant-plant interactions under increasing cover crop densities and diversities - (Peer Reviewed Journal)
Newberger, D.R., Minas, I.S., Manter, D.K., Vivanco, J.M. 2023. Shifts of the soil microbiome composition induced by plant-plant interactions under increasing cover crop densities and diversities. Scientific Reports. 13. Article 17150. https://doi.org/10.1038/s41598-023-44104-8.

Network analysis of nematodes with soil microbes on cool-season golf courses - (Peer Reviewed Journal)
Allan-Perkins, E., Manter, D.K., Wick, R., Jung, G. 2023. Network analysis of nematodes with soil microbes on cool-season golf courses. Rhizosphere. 28. Article e100798. https://doi.org/10.1016/j.rhisph.2023.100798.

Modeling denitrification: Can we report what we don’t know? - (Peer Reviewed Journal)
Grosz, B., Matson, A., Weil, R., Dechow, R., Del Grosso, S.J., Vogeler, I., Kuhnert, M., Haas, E., Peterson, S., Diamantopoulos, E., Kraus, D., Sihi, D., He, H., Dörsch, P., Zhang, J., Léonard, J., Butterbach-Bah, K., Clough, T., Hui, D., Yeluripati, J., Kleineidam, K., Müller, C., Henri, C., Davidson, E., Scheer, C. 2023. Modeling denitrification: Can we report what we don’t know? AGU Advances. 4(6). Article e2023AV000990. https://doi.org/10.1029/2023AV000990.

Grappling with the success and trade-offs of global nutrient redistribution - (Peer Reviewed Journal)
Kleinman, P.J., Harmel, R.D. 2023. Grappling with the success and trade-offs of global nutrient redistribution. Environment, Development and Sustainability. https://doi.org/10.1007/s10668-023-03846-1.

Counterfactual scenarios reveal historical impact of cropland management on soil organic carbon stocks in the United States - (Peer Reviewed Journal)
Ogle, S., Breidt, J., Del Grosso, S.J., Gurung, R., Spencer, S., Williams, S., Manning, D. 2023. Counterfactual scenarios reveal historical impact of cropland management on soil organic carbon stocks in the United States. Scientific Reports. 13. Article e14564. https://doi.org/10.1038/s41598-023-41307-x.

Reviewing the current understanding of replant syndrome in orchards from a soil microbiome perspective - (Peer Reviewed Journal)
Newberger, D.R., Manter, D.K., Vivanco, J.M. 2023. Reviewing the current understanding of replant syndrome in orchards from a soil microbiome perspective. Journal of Applied Microbiology. 3(3):856-866. https://doi.org/10.3390/applmicrobiol3030059.

Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil - (Peer Reviewed Journal)
Stevens, B.M., Creed, T.B., Reardon, C.L., Manter, D.K. 2023. Comparison of Oxford Nanopore Technologies and Illumina MiSeq sequencing with mock communities and agricultural soil. Scientific Reports. 13. Article e9323. https://doi.org/10.1038/s41598-023-36101-8.

A microbiological approach to alleviate soil replant syndrome in peaches - (Peer Reviewed Journal)
Newberger, D.R., Minas, I.S., Manter, D.K., Vivanco, J.M. 2023. A microbiological approach to alleviate soil replant syndrome in peaches. Microorganisms. 11(6). Article e1448. https://doi.org/10.3390/microorganisms11061448.

Community structure and abundance of ACC deaminase containing bacteria in soils with 16S-PICRUSt2 inference or direct acdS gene sequencing - (Peer Reviewed Journal)
Manter, D.K., Hamm, A.K., Deel, H.L. 2023. Community structure and abundance of ACC deaminase containing bacteria in soils with 16S-PICRUSt2 inference or direct acdS gene sequencing. Journal of Microbiological Methods. 211. Article e106740. https://doi.org/10.1016/j.mimet.2023.106740.

Long-term nitrogen balance of an irrigated no-till soil-corn system - (Peer Reviewed Journal)
Delgado, J.A., Halvorson, A.D., D'Adamo, R.E., Stewart, C.E., Floyd, B.A., Del Grosso, S.J. 2023. Long-term nitrogen balance of an irrigated no-till soil-corn system. Nutrient Cycling in Agroecosystems. 126:229-243. https://doi.org/10.1007/s10705-023-10287-9.

Nitrogen management can increase potato yields and food security for climate change adaptation in the Andean region - (Peer Reviewed Journal)
Delgado, J.A., Barrera, V.H., Alwang, J.R., Cartagena, Y.E., Escudero, L.O., Neer, D.L., D'Adamo, R.E., Zapata, A.C. 2023. Nitrogen management can increase potato yields and food security for climate change adaptation in the Andean region. American Journal of Potato Research. https://doi.org/10.1007/s12230-023-09912-8.

Root traits of perennial C4 grasses contribute to cultivar variations in soil chemistry and species patterns in particulate and mineral-associated carbon pool formation - (Peer Reviewed Journal)
Kelly-Slatten, M., Stewart, C.E., Tfaily, M., Jastrow, J., Sasso, A., de Graaf, M. 2023. Root traits of perennial C4 grasses contribute to cultivar variations in soil chemistry and species patterns in particulate and mineral-associated carbon pool formation. Global Change Biology Bioenergy. 15(4):613-628. https://doi.org/10.1111/gcbb.13041.

CaRPE: the Carbon Reduction Potential Evaluation tool for building climate mitigation scenarios on US agricultural lands - (Peer Reviewed Journal)
Manter, D.K., Moore, J.M. 2022. CaRPE: the Carbon Reduction Potential Evaluation tool for building climate mitigation scenarios on US agricultural lands. Database: The Journal of Biological Databases and Curation. 2022. Article baac105. https://doi.org/10.1093/database/baac105.

Monolith soil core sampling to develop nitrate testing protocol for manure injection - (Peer Reviewed Journal)
Meinen, R.J., Beegle, D.B., Vishwanath, S., Kleinman, P.J., Saporito, L.S., Spargo, J., Karsten, H., Dillon, J. 2023. Monolith soil core sampling to develop nitrate testing protocol for manure injection. Soil Science Society of America Journal. 87(2):378-389. https://doi.org/10.1002/saj2.20509.

Evaluating the impacts of alternative grazing management practices on soil carbon sequestration and soil health indicators - (Peer Reviewed Journal)
Kim, J., Ale, S., Kreuter, U., Teague, R., Del Grosso, S.J., Dowhower, S.L. 2022. Evaluating the impacts of alternative grazing management practices on soil carbon sequestration and soil health indicators. Agriculture, Ecosystems and Environment. 342. Article e108234. https://doi.org/10.1016/j.agee.2022.108234.

Updates to the MANAGE database to facilitate regional analyses of nutrient runoff - (Peer Reviewed Journal)
Harmel, R.D., Kleinman, P.J., Hopkins, A., Millhouser, P., Ippolito, J.A., Sahoo, D. 2022. Updates to the MANAGE database to facilitate regional analyses of nutrient runoff. Agricultural and Environmental Letters. 7(2). Article e20095. https://doi.org/10.1002/ael2.20095.

Does agroecosystem management mitigate historic climate impacts on dryland winter wheat yields? - (Peer Reviewed Journal)
Miner, G.S., Stewart, C.E., Vigil, M.F., Poss, D.J., Haley, S.D., Jones-Diamond, S.M., Mason, E.R. 2022. Does agroecosystem management mitigate historic climate impacts on dryland winter wheat yields? Agronomy Journal. 114(6):3515-3530. https://doi.org/10.1002/agj2.21198.

Envisioning the manureshed: Towards comprehensive integration of modern crop and animal production - (Peer Reviewed Journal)
Kleinman, P.J., Spiegal, S.A., Silviera, M., Baker, J.M., Dell, C.J., Bittman, S., Cibin, R., Vadas, P.A., Buser, M.D., Tsegaye, T.D. 2022. Envisioning the manureshed: Towards comprehensive integration of modern crop and animal production. Journal of Environmental Quality. 51(4):481-493. https://doi.org/10.1002/jeq2.20382.