Research Project: Novel Weed Management Solutions: Understanding Weed-Crop Interactions in Northern Climates

Location: Sunflower and Plant Biology Research

Publications (Clicking on the reprint icon will take you to the publication reprint.)

Transcript profiles differentiate cold acclimation-induced processes in a summer and winter biotype of camelina - (Peer Reviewed Journal)
Wang, H., Dogramaci, M., Anderson, J.V., Horvath, D.P., Chao, W.S. 2021. Transcript profiles differentiate cold acclimation-induced processes in a summer and winter biotype of camelina. Plant Molecular Biology Reporter. https://doi.org/10.1007/s11105-021-01324-4.

Genome-wide association mapping of freezing tolerance in canola (Brassica napus L.) - (Peer Reviewed Journal)
Chao, W.S., Horvath, D.P., Stamm, M.J., Anderson, J.V. 2021. Genome-wide association mapping of freezing tolerance in canola (Brassica napus L.). Agronomy Journal. 11(2):233. https://doi.org/10.3390/agronomy11020233.

Review on unmanned aerial vehicles, remote sensors, imagery processing, and their applications in agriculture - (Peer Reviewed Journal)
Olson, D.O., Anderson, J.V. 2021. Review on unmanned aerial vehicles, remote sensors, imagery processing, and their applications in agriculture. Agronomy Journal. 113(2):971-992. https://doi.org/10.1002/agj2.20595.

A new diversity panel for winter rapeseed (Brassica napus, L.) genome wide association studies - (Peer Reviewed Journal)
Horvath, D.P., Stamm, M., Talukder, Z., Fiedler, J.D., Horvath, A., Horvath, G., Chao, W.S., Anderson, J.V. 2020. A new diversity panel for winter rapeseed (Brassica napus, L.) genome wide association studies. Agronomy Journal. 10(12):2006. https://doi.org/10.3390/agronomy10122006.

Genome wide association studies and transcriptome changes during acclimation and deacclimation in divergent canola varieties - (Peer Reviewed Journal)
Horvath, D.P., Jiaping, Z., Chao, W.S., Ashok, M., Rahman, M., Anderson, J.V. 2020. Genome wide association studies and transcriptome changes during acclimation and deacclimation in divergent canola varieties. International Journal of Molecular Sciences. 21(23):9148. https://doi.org/10.3390/ijms21239148.

Crop growth and productivity of winter camelina in response to sowing date in the northwestern corn belt of the USA - (Peer Reviewed Journal)
Wittenberg, A., Anderson, J.V., Berti, M.T. 2020. Crop growth and productivity of winter camelina in response to sowing date in the northwestern corn belt of the USA. Industrial Crops and Products. 158:1-12. https://doi.org/10.1016/j.indcrop.2020.113036.

Teosinte (Zea mays ssp parviglumis) transcriptomic response to weed stress identifies similarities and differences between varieties and with modern corn varieties - (Peer Reviewed Journal)
Bruggeman, S., Horvath, D.P., Fennell, A., Gonzalez-Hernandez, J., Clay, S.A. 2020. Teosinte (Zea mays ssp parviglumis) transcriptomic response to weed stress identifies similarities and differences between varieties and with modern corn varieties. PLoS One. 15(8):e0237715. https://doi.org/10.1371/journal.pone.0237715.

Fine mapping to identify heterotic gene(s) for increasing yield in canola - (Popular Publication)
Zheng, P., Rahman, M., Anderson, J.V., Chao, W.S. 2021. Fine mapping to identify heterotic gene(s) for increasing yield in canola. 2019-2020 Canola Research Update. pp 1-2.

Increasing freezing tolerance in canola through a better understanding of cold deacclimation - (Popular Publication)
Anderson, J.V., Horvath, D.P., Chao, W.S. 2021. Increasing freezing tolerance in canola through a better understanding of cold deacclimation. 2019-2020 Canola Research Update. pp 1-2.

Transcriptome analysis suggests cytokinin and gibberellin signaling may account for differences between spring and winter canola (B. napus) root development - (Peer Reviewed Journal)
Arifuzzaman, M., Horvath, D.P., Rahman, M. 2020. Transcriptome analysis suggests cytokinin and gibberellin signaling may account for differences between spring and winter canola (B. napus) root development. Journal of Plant Biology. https://doi.org/10.1007/s12374-020-09270-6.

Phenotyping a diverse collection of forage sorghum genotypes for chilling tolerance - (Peer Reviewed Journal)
Podder, S., Samarappuli, D., Anderson, J.V., Berti, M.T. 2020. Phenotyping a diverse collection of forage sorghum genotypes for chilling tolerance. Agronomy. 10(8):1074. https://doi.org/10.3390/agronomy10081074.

Midwest Cover Crops Council - North Dakota annual report - (Other)
Berti, M.T., Samarappuli, D., Peterson, A., Cabello, S., Andersen, B., Wittenberg, A., Ransom, J., Schmitt, M., Kandel, H., Johnson, K., Gramig, G., Puka-Beals, J., Wick, A., Franzen, D., Gasch, C., Desutter, T., Goos, R., Wirtz, J., Cihacek, L., Daigh, A., Ressler, L., Yan, G., Acharya, K., Ostlie, M., Endres, G., Aberle, E., Eriksmoen, E., Augustin, C., Jacobs, J., Buetow, R., Nowatzki, J., Hormon, J., Anderson, J.V. 2020. Midwest Cover Crops Council, North Dakota annual report. Extension Reports. 1-53.

Varying weed densities alter the corn transcriptome, highlighting a core set of weed-induced genes and processes with potential for manipulating weed tolerance - (Peer Reviewed Journal)
Horvath, D.P., Clay, S.A., Bruggeman, S.A., Anderson, J.V., Chao, W.S., Yeater, K.M. 2019. Varying weed densities alter the corn transcriptome, highlighting a core set of weed-induced genes and processes with potential for manipulating weed tolerance. The Plant Genome. 12(3):1-9. https://doi.org/10.3835/plantgenome2019.05.0035.

Potential benefits to the environment by integrating winter camelina in current cropping systems of the northern Great Plains of the USA - (Proceedings)
Berti, M.T., Yan, G., Samarappuli, D., Peterson, A., Wittenberg, A., Anderson, J.V. 2019. Potential benefits to the environment by integrating winter camelina in current cropping systems of the northern Great Plains of the USA. Proceedings of European Biomass Conference and Exhibition, May 27-30, 2019, Lisbon, Portugal. p.131-136.

Annual growth cycle observation, hybridization and forcing culture for improving the ornamental application of Paeonia lactiflora Pall. in the low-latitude regions - (Peer Reviewed Journal)
Zhang, J., Zhang, D., Wei, J., Xiaohua, S., Huaqiao, D., Qiu, S., Guo, J., Li, D., Zhu, K., Zhou, J., Horvath, D.P., Xia, Y. 2019. Annual growth cycle observation, hybridization and forcing culture for improving the ornamental application of Paeonia lactiflora Pall. in the low-latitude regions. PLoS One. 14(6):e0218164. https://doi.org/10.1371/journal.pone.0218164.

Genes associated with chloroplasts and hormone-signaling, and transcription factors other than CBFs are associated with differential survival after low temperature treatments of Camelina sativa biotypes - (Peer Reviewed Journal)
Horvath, D., Anderson, J.V., Chao, W.S., Zheng, P., Buchwaldt, M., Parkin, I.A.P., Dorn, K. 2019. Genes associated with chloroplasts and hormone-signaling, and transcription factors other than CBFs are associated with differential survival after low temperature treatments of Camelina sativa biotypes. PLoS One. 14(5):e0217692. https://doi.org/10.1371/journal.pone.0217692.

High throughput phenotyping of Camelina sativa seeds for crude protein, total oil and fatty acids profile by near infrared spectroscopy - (Peer Reviewed Journal)
Anderson, J.V., Wittenberg, A., Li, H., Berti, M.T. 2019. High throughput phenotyping of Camelina sativa seeds for crude protein, total oil, and fatty acids profile by near infrared spectroscopy. Industrial Crops and Products. 137:501-507. https://doi.org/10.1016/j.indcrop.2019.04.075.

Winter and summer annual biotypes of camelina have different morphology and seed characteristics - (Peer Reviewed Journal)
Wittenberg, A., Anderson, J.V., Berti, M.T. 2019. Winter and summer annual biotypes of camelina have different morphology and seed characteristics. Industrial Crops and Products. 135:230-237. https://doi.org/10.1016/j.indcrop.2019.04.036.

Protein content in cassava storage root is associated with total abundance of carotenoids - (Peer Reviewed Journal)
Carvalho, L.J.C.B., Anderson, J.V., Da Silva, J.P., Chen, S., De Souza, C.R.B. 2019. Protein content in cassava storage root is associated with total abundance of carotenoids. International Research Journal of Plant Science. https://doi.org/10.14303/irjps.2019.003. 10(1):1-10.

MCCC-North Dakota Annual Report - (Other)
Berti, M., Samarappuli, D., Peterson, A., Cabello, S., Podder, S., Andersen, B., Wittenberg, A., Ransom, J., Schmitt, M., Kandel, H., Johnson, K., Gramig, G., Puka-Beals, J., Howatt, K., Johnson, B., Ripplinger, D., Wick, A., Franzen, D., Gasch, C., Desutter, T., Goos, R., Wirtz, J., Cihacek, L., Daigh, A., Ressler, L., Yan, G., Acharya, K., Ostlie, M., Endres, G., Aberle, E., Eriksmoen, E., Augustin, C., Jacobs, J., Buetow, R., Landblom, D., Senturklu, S., Nowatzki, J., Hormon, J., Anderson, J.V. 2019. MCCC-North Dakota Annual Report. In: Midwest Cover Crop Council Meeting, Cover Crops and Soil Health: The Practical Way Forward. Springfield, Illinois, February 21, 2019 - State Reports. Available: http://mccc.msu.edu/wp-content/uploads/ 2019/03/ND_2018_MCCC_-North-Dakota-Report.pdf.

Selection of endogenous reference genes for qRT-PCR analysis in Camelina sativa and identification of FLOWERING LOCUS C allele-specific markers to differentiate summer- and winter-biotypes - (Peer Reviewed Journal)
Chao, W.S., Wang, H., Horvath, D.P., Anderson, J.V. 2019. Selection of endogenous reference genes for qRT-PCR analysis in Camelina sativa and identification of FLOWERING LOCUS C allele-specific markers to differentiate summer- and winter-biotypes. Industrial Crops and Products. 129:495-502. https://doi.org/10.1016/j.indcrop.2018.12.017.

Cloning and characterization of the homoeologous genes for the Rec8-like meiotic cohesin in polyploid wheat - (Peer Reviewed Journal)
Ma, G., Zhang, W., Liu, L., Chao, W.S., Gu, Y.Q., Qi, L., Xu, S.S., Cai, X. 2018. Cloning and characterization of the homoeologous genes for the Rec8-like meiotic cohesin in polyploid wheat. Biomed Central (BMC) Plant Biology. 18:224. https://doi.org/10.1186/s12870-018-1442-y.

Genome-wide association study for electrolyte leakage in rapeseed/canola (Brassica napus L.) - (Peer Reviewed Journal)
Fiebelkorn, D., Horvath, D., Rahman, M. 2018. Genome-wide association study for electrolyte leakage in rapeseed/canola (Brassica napus L.). Molecular Breeding. 38:129. https://doi.org/10.1007/s11032-018-0892-0.

Chilling-tolerant forage sorghum as a potential bioenergy feedstock in North Central USA - (Proceedings)
Berti, M.T., Podder, S., Cabello, S., Andersen, B., Samarappuli, D., Peterson, A., Anderson, J.V. 2018. Chilling-tolerant forage sorghum as a potential bioenergy feedstock in North Central USA. In: 26th European Biomass Conference and Exhibition Proceedings, May 14-17, 2018, Copenhagen, Denmark. https://doi.org/10.5071/26thEUBCE2018-1CO.5.2 .

OMICS in weed science research: A perspective from genomics, transcriptomics and metabolomics approaches - (Review Article)
Maroli, A.S., Gaines, T.A., Foley, M.E., Duke, S.O., Dogramaci, M., Anderson, J.V., Horvath, D.P., Chao, W.S., Tharayil, N. 2018. OMICS in weed science research: A perspective from genomics, transcriptomics and metabolomics approaches. Weed Science. https://doi.org/10.1017/wsc.2018.33.

Expression of Flowering Locus C and a frame shift mutation of this gene on chromosome 20 differentiate a summer and winter annual biotype of Camelina sativa - (Peer Reviewed Journal)
Anderson, J.V., Horvath, D.P., Dogramaci, M., Dorn, K.M., Chao, W.S., Watkin, E.E., Hernandez, A.G., Marks, M.D., Gesch, R. 2018. Expression of FLOWERING LOCUS C and a frameshift mutation of this gene on chromosome 20 differentiate a summer and winter annual biotype of Camelina sativa. Plant Direct. 2:1-14. https://doi.org/10.1002/pld3.60.

Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed-free period - (Peer Reviewed Journal)
Horvath, D.P., Bruggeman, S., Moriles-Miller, J., Anderson, J.V., Dogramaci, M., Scheffler, B.E., Hernandez, A.G., Foley, M.E., Clay, S. 2018. Weed presence altered biotic stress and light signaling in maize even when weeds were removed early in the critical weed-free period. Plant Direct. Available: https://onlinelibrary.wiley.com/doi/abs/10.1002/pld3.57.

Gene space and transcriptome assemblies of leafy spurge (Euphorbia esula) identify promoter sequences, repetitive elements, high-quality markers, and a full-length chloroplast genome - (Peer Reviewed Journal)
Horvath, D.P., Patel, S., Dogramaci, M., Chao, W.S., Anderson, J.V., Foley, M.E., Scheffler, B., Lazo, G., Dorn, K., Yan, C., Childers, A., Schatz, M., Marcus, S. 2018. Gene space and transcriptome assemblies of leafy spurge (Euphorbia esula) identify promoter sequences, repetitive elements, high-quality markers, and a full-length chloroplast genome. Weed Science. 66(3):355-367. https://doi.org/10.1017/wsc.2018.2.

Domestication syndrome in cassava (Manihot esculenta Crantz): Assessing morphological traits and differentially expressed genes associated with genetic diversity of storage root - (Book / Chapter)
Carvalho, L.J.C.B., Anderson, J.V., Chen, S., Mba, C., Dogramaci, M. 2018. In: Waisundara, V., editor. Cassava. Domestication syndrome in cassava (Manihot esculenta Crantz): Assessing morphological traits and differentially expressed genes associated with genetic diversity of storage root. Rijeka, Croatia. InTech. https://doi.org/10.5772/intechopen.71348.

Storage root of cassava: Morphological types, anatomy, formation, growth, development and harvest time - (Book / Chapter)
Carvalho, L.J.C.B., Filho, J.F., Anderson, J.V., Figueiredo, P.G., Chen, S. 2018. Storage root of cassava: Morphological types, anatomy, formation, growth, development and harvest time. In: Waisundara, V., editor. Cassava. Rijeka, Croatia. InTech. https://doi.org/10.5772/intechopen.71347.

Comparative mapping of seed dormancy loci between tropical and temperate ecotypes of weedy rice (Oryza sativa L.) - (Peer Reviewed Journal)
Zhanga, L., Loua, J., Foley, M.E., Gu, X.-Y. 2017. Comparative mapping of quantitative trait loci for seed dormancy between tropical and temperate ecotypes of weedy rice (Oryza sativa L.). Genes, Genomes, Genetics. 7(8):2605-2614. https://doi.org/10.1534/g3.117.040451.

Foliar glyphosate treatment alters transcript and hormone profiles in crown buds of leafy spurge and induces dwarfed and bushy phenotypes throughout its perennial life cycle - (Peer Reviewed Journal)
Dogramaci, M., Anderson, J.V., Chao, W.S., Horvath, D.P., Hernandez, A.G., Mikel, M.A., Foley, M.E. 2017. Foliar glyphosate treatment alters transcript and hormone profiles in crown buds of leafy spurge and induces dwarfed and bushy phenotypes throughout its perennial life cycle. The Plant Genome. https://doi.org/10.3835/plantgenome2016.09.0098.

Comprehensive transcriptome analyses reveal differential gene expression profiles of Camellia sinensis axillary buds at para-, endo-, ecodormancy, and bud flush stages - (Peer Reviewed Journal)
Hao, X., Yang, Y., Yue, C., Wang, L., Horvath, D.P., Wang, X. 2017. Comprehensive transcriptome analyses reveal differential gene expression profiles of Camellia sinensis axillary buds at para-, endo-, ecodormancy, and bud flush stages. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2017.00553.

Comparison of phytohormone levels and transcript profiles during seasonal dormancy transitions in underground adventitious buds of leafy spurge - (Peer Reviewed Journal)
Chao, W.S., Dogramaci, M., Horvath, D.P., Anderson, J.V., Foley, M.E. 2017. Comparison of phytohormone levels and transcript profiles during seasonal dormancy transitions in underground adventitious buds of leafy spurge. Plant Molecular Biology. 94(3):281-302.

Coal-bed methane water: effects on soil properties and camelina productivity - (Peer Reviewed Journal)
Sintim, H.Y., Zheljazkov, V.D., Foley, M.E., Evangelista, R.L. 2017. Coal-bed methane water: effects on soil properties and camelina productivity. Journal of Environmental Quality. 46(3):641-648.

Camelina uses, genetics, genomics, production and management - (Peer Reviewed Journal)
Berti, M., Gesch, R., Eynck, C., Anderson, J., Cermak, S. 2016. Camelina uses, genetics, genomics, production and management. Industrial Crops and Products. 94:690-710.

Fatty acid and transcript profiling in developing seeds of three Brassica napus cultivars - (Peer Reviewed Journal)
Petkova, M., Chao, W.S., Cook, L., West, M., Rahman, M., Foley, M.E. 2015. Fatty acid and transcript profiling in developing seeds of three Brassica napus cultivars. Plant Breeding and Seed Science. 72(1):3-32. https://doi.org/10.1515/plass-2015-0029.

A reevaluation of myceliogenic germination of sclerotia for Sclerotinia sclerotiorum strain Sun-87 - (Abstract Only)
Foley, M.E., Dogramaci, M., Underwood, W. 2016. A reevaluation of myceliogenic germination of sclerotia for Sclerotinia sclerotiorum strain Sun-87. [abstract]. National Sclerotinia Initiative 2016 Annual Meeting Program Booklet, January 20-22, 2016, Bloomington, MN. p. 10.