Research Project: Characterizing Antimicrobial Resistance in Poultry Production Environments

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Publications (Clicking on the reprint icon will take you to the publication reprint.)

Litter commensal bacteria can limit the horizontal gene transfer of antimicrobial resistance to Salmonella in chickens. - (Peer Reviewed Journal)
Oladeinde, A.A., Abdo, Z., Zwirzitz, B., Woyda, R., Lakin, S.M., Press, M.O., Cook, K.L., Cox Jr, N.A., Thomas, J.C., Looft, T.P., Rothrock Jr, M.J., Zock, G.S., Plumblee Lawrence, J.R., Cudnik, D., Ritz, C. 2022. Litter commensal bacteria can limit the horizontal gene transfer of antimicrobial resistance to Salmonella in chickens. Applied and Environmental Microbiology.88(9). https://doi.org/10.1128/aem.02517-21

Bacterial Detection and Recovery from Poultry Litter. - (Peer Reviewed Journal)
Plumblee Lawrence, J.R., Cudnik, D., Oladeinde, A.A. 2022. Bacterial detection and recovery from Poultry Litter. Frontiers in Microbiology. 12:803150. https://doi.org/10.3389/fmicb.2021.803150.

Application of Imaging Systems for Monitoring Poultry Well-being - (Research Notes)
Chai, L., Guo, Y., Aggrey, S.E., Oladeinde, A.A., Ritz, C. 2022. Application of Imaging Systems for Monitoring Poultry Well-being. University of Georgia Research Report. UGA Cooperative Extension Circular 1256.

Escaping the fate of Sisyphus: assessing resistome hybridization baits for antimicrobial resistance gene capture - (Peer Reviewed Journal)
Beaudry, M.S., Thomas, J.C., Baptista, R.P., Sullivan, A.H., Norfolk, W., Devault, A., Enk, J., Kieran, T.J., Rhodes, O.E., Perry-Dow, K., Rose, L., Bayona-Vasquez, N.J., Oladeinde, A.A., Lipp, E.K., Sanchez, S., Glenn, T.C. 2021. Escaping the fate of Sisyphus: assessing resistome hybridization baits for antimicrobial resistance gene capture. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15767.

Horizontal gene transfer is the main driver of antimicrobial resistance in broiler chicks infected with Salmonella enterica Serovar Heidelberg - (Peer Reviewed Journal)
Oladeinde, A.A., Abdo, Z., Press, M.O., Cook, K.L., Cox Jr, N.A., Zwirtzitz, B., Woyda, R., Lakin, S.M., Thomas Iv, J.C., Looft, T.P., Cosby, D.E., Hinton Jr, A., Guard, J.Y., Line, J.E., Rothrock Jr, M.J., Berrang, M.E., Herrington, K., Zock, G.S., Plumblee Lawrence, J.R., Cudnik, D., House, S.L., Ingram, K.D., Lariscy, L., Wagner, R., Aggrey, S.E., Chai, L., Ritz, C. 2021. Horizontal gene transfer is the main driver of antimicrobial resistance in broiler chicks infected with Salmonella enterica Serovar Heidelberg. mSystems. 6(4):e00729-21. https://doi.org/10.1128/mSystems.00729-21.

Unveiling the gut microbiota and resistome of the wild cotton-mice, Peromyscus gossypinus, from heavy metal and radionuclide-contaminated sites in the Southeastern US - (Peer Reviewed Journal)
Thomas, J.C., Kieran, T.J., Finger, J.W., Bayona-Vasquez, N.J., Oladeinde, A.A., Beasley, J., Seaman, J.C., Mcarthur, J., Rhodes, O.E., Glenn, T.C. 2021. Unveiling the gut microbiota and resistome of the wild cotton-mice, Peromyscus gossypinus, from heavy metal and radionuclide-contaminated sites in the Southeastern US. American Society for Microbiology. 9:e00097-21. https://doi.org/10.1128/Spectrum.00097-21.

Succession patterns of the bacterial community in poultry litter after bird removal and sodium bisulfate application - (Peer Reviewed Journal)
Johnson, J., Zwirzitz, B., Oladeinde, A.A., Milfort, M.C., Looft, T.P., Chai, L., Zock, G.S., Sommers, M., Tunim, S., Aggrey, S.E. 2021. Succession patterns of the bacterial community in poultry litter after bird removal and sodium bisulfate application. Journal of Environmental Quality. 50(4):923-933. https://doi.org/10.1002/jeq2.20248.

A machine vision-based method optimized for restoring broiler chicken images occluded by feeding and drinking equipment - (Peer Reviewed Journal)
Guo, Y., Aggrey, S.E., Oladeinde, A.A., Johnson, J., Zock, G.S., Chai, L. 2021. A machine vision-based method optimized for restoring broiler chicken images occluded by feeding and drinking equipment. Animals. 11(1):123. https://doi.org/10.3390/ani11010123.

Succession patterns of poultry litter microbiota after bird removal and PLT(R) application - (Abstract Only)

A machine vision-based method for monitoring broiler chicken floor distribution - (Peer Reviewed Journal)
Guo, Y., Chai, L., Aggrey, S., Oladeinde, A.A., Johnson, J., Zock, G. 2020. A machine vision-based method for monitoring broiler chicken floor distribution. Sensors. http://doi.org/10.3390/s20113179.

Broiler house particulate matter, aerobiome, and antibiotic resistant E. coli under "raised without antibiotics" production - (Abstract Only)

A machine vision-based method for monitoring broiler chicken floor distribution - (Abstract Only)

Persistence of antibiotic resistant pathogens and commensal bacteria in “no antibiotic ever” production broiler house litter - (Abstract Only)

Temperature, humidity and ammonia are important environmental parameters modulating the gut microbiome of broilers under “Raised Without Antibiotics” production - (Abstract Only)

Broiler house particulate matter, aerobiome and antibiotic resistant E. coli under “raised without antibiotics” production - (Abstract Only)

Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg - (Peer Reviewed Journal)
Bucher, M., Zwirzitz, B., Oladeinde, A.A., Cook, K.L., Plymel, C., Zock, G., Aggrey, S., Ritz, C., Looft, T.P., Lipp, E., Agga, G.E., Sistani, K.R. 2020. Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg. Journal of Environmental Quality. 49(4):869-881. https://doi.org/10.1002/jeq2.20081.

Co-occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site - (Peer Reviewed Journal)
Thomas, J., Oladeinde, A.A., Kierant, T., Finger, J., Vasquez, N., Cartee, J., Beasley, J., Seaman, J., Mcarthur, V., Rhodes, O., Glenn, T. 2020. Co-occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site. Microbial Biotechnology. https://doi.org/10.1111/1751-7915.13578.

Multiple E. coli sequence types contribute to the acquisition of IncI1 plasmids in Salmonella Heidelberg - (Abstract Only)

Longitudinal sampling of organic farms for microbiological quality farmers’ market produce: bacteria and antibiotic resistance on USDA certified organic farms that use biological soil amendments of animal origin - (Abstract Only)

Does built-up litter competitively exclude Salmonella: What have we learned from Salmonella Heidelberg? - (Abstract Only)

Plasmid and antibiotic resistance genes present in the ceca of broiler chickens infected with Eimeria spp - (Abstract Only)

Horizontal gene transfer and acquired antibiotic resistance in S. Heidelberg following in vitro incubation in broiler ceca - (Peer Reviewed Journal)
Oladeinde, A.A., Cook, K.L., Lakin, S., Abdo, Z., Looft, T.P., Herrington, K., Zock, G.S., Plumblee Lawrence, J.R. 2019. Horizontal gene transfer and acquired antibiotic resistance in S. Heidelberg following in vitro incubation in broiler ceca. Applied and Environmental Microbiology. 85(22):e01903-19. https://doi.org/10.1128/AEM.01903-19.

Antimicrobial resistance associated with the poultry production environment - (Abstract Only)

Environmental dimension of antibiotic resistance: Assessment of basic science gaps - (Peer Reviewed Journal)
Smalla, K., Cook, K.L., Djordjevic, S., Klumper, U., Gillings, M. 2018. Environmental dimension of antibiotic resistance: Assessment of basic science gaps. FEMS Microbiology Ecology. https://doi.org/10.1093/femsec/fiy195.

Hotspot mutations and ColE1 plasmids contribute to the fitness of Salmonella Heidelberg in poultry litter - (Peer Reviewed Journal)
Oladeinde, A., Cook, K.L., Orlek, A., Zock, G.S., Herrington, K., Plumblee Lawrence, J.R., Hall, M.C., Cox Jr, N.A. 2018. Hotspot mutations and ColE1 plasmids contribute to the fitness of Salmonella Heidelberg in poultry litter. PLoS One. https://doi.org/10.1371/journal.pone.0202286.

Managing beef backgrounding residual soil contaminants by alum and biochar amendments - (Peer Reviewed Journal)
Netthisinghe, A., Cook, K.L., Gilfillen, R., Woosley, P., Sistani, K.R. 2018. Managing beef backgrounding residual soil contaminants by alum and biochar amendments. Journal of Environmental Quality. https://doi.org/10.2134/jeq2018.02.0088.

Transcriptome changes of Escherichia coli, Enterococcus faecalis and Escherichia coli O157:H7 laboratory strains in response to photo-degraded DOM - (Peer Reviewed Journal)
Oladeinde, A., Lipp, E., Chen, C., Murihead, R., Glenn, T., Cook, K.L., Molina, M. 2018. Transcriptome changes of Escherichia coli, Enterococcus faecalis and Escherichia coli O157:H7 laboratory strains in response to photo-degraded DOM. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2018.00882.

Co1 plasmids contribute to the fitness of Salmonella Heidelberg in poultry litter - (Abstract Only)

Longitudinal environmental sampling of small organic farms for foodborne pathogens and indicator bacteria as part of the HARVEST Initiative - (Abstract Only)

Incidence and degree of Salmonella Heidelberg colonization of day old broiler chicks using several methods of inoculation - (Abstract Only)
Oladeinde, A., Cook, K.L., Cox Jr, N.A., Ritz, C., Cosby, D.E., Plumblee Lawrence, J.R., House, S.L., Zock, G.S., Jackson, J. 2018. Incidence and degree of Salmonella Heidelberg colonization of day old broiler chicks using several methods of inoculation . Meeting Abstract. 97(E-Suppl 1):65.