Location: Sugarcane Field Station
2020 Annual Report
Objectives
1. Develop sugarcane breeding populations with high quality seed for use in Florida and Louisiana, and select and advance elite clones to produce and release improved sugarcane cultivars for sustainable production in Florida.
2. Characterize abiotic and biotic stress tolerance of sugarcane breeding populations to determine agronomic, physiological, and genetic relationships, and use the information in breeding programs to improve efficiency of selection methodologies.
2.A. Develop physiological and agronomic methodologies to screen yield components of sugarcane clones for tolerance to flowering characteristics.
2.B. Compare and determine methodologies that improve selection efficiency and maximize genetic gains in the Canal Point sugarcane breeding programs.
2.C. Develop and compare physiological testing and genetic x environmental interactions for sugarcane and its relatives, to determine abiotic tolerance and yield potentials that can be used for both sugarcane and biomass yield advancement.
3. Elucidate the molecular and genetic bases of disease resistance, low temperature stress, high sucrose content, and high biomass yield, develop molecular markers, and use molecular markers to screen germplasm and progenies for stress tolerance, yield, and quality.
3.A. Develop and test genomic prediction models for clonal and parental selection for disease resistance, biomass yield, and sucrose content.
3.B. Identify and screen sugarcane and its relative germplasm for freeze damage and cold tolerance. Utilize genotypic sequencing and phenotypic screening to ascertain putative associative markers linking abiotic tolerance and yield response with specific genetic loci.
3.C. Develop molecular markers for sugarcane disease resistance and high sucrose concentration.
3.D. Development and utilization of 100K single nucleotide polymorphism (SNP) array in Saccharum Spp.
Approach
The primary goal of this project is to improve yields and profits of Florida sugarcane growers by developing more productive and profitable cultivars with improved resistance and tolerance to biotic and abiotic stresses. Most research in genetics, agronomy, crop physiology, and molecular biology focuses on improving the breeding and selection of cultivars to yield more on muck and sand soils and have tolerance or durable resistance to diseases and abiotic stresses. This process will be enhanced through improved knowledge of classic and molecular genetics, identification of important traits for selection, and selection methodologies. A portion of the research aims to improve yields through modified agronomic practices.
Specific efforts may focus on developing improved cultivars with disease resistance and high sucrose concentration using different approaches, especially our new sand-soil program and this may include the pursuit of links between traditional efforts to breed for increased sucrose yields and newer programs that use sugarcane and related species for cellulosic ethanol and enhanced evaluations of the genotypes. The scientists at Canal Point are expected to interact with each other and with colleagues at the University of Florida in Gainesville and its Everglades Research and Education Center in Belle Glade, and with other public and private industry scientists in Florida and Louisiana, Texas, and other areas. Over the next 5 years, we will focus on our specific objectives.
Progress Report
The challenges facing the Florida sugarcane growers are still the introduction of orange rust, brown rust, smut, and leaf scald diseases and enhancement of cane sucrose content. Consistently developing disease tolerant and high sugar yield cultivars is important for sustainable sugarcane production. In addition to making efforts for improving the Canal Point (CP) sugarcane breeding and cultivar development programs (CP programs) for Florida, true seeds, developed from crosses at Canal Point, Florida, were sent to the ARS cultivar development program in Houma, Louisiana. It is estimated that in the 2019-2020 crossing season, approximately 514,768 seeds from 1,041 crosses were sent to Louisiana; 1,204,769 seeds from 1,145 crosses remained in Florida. Of these seeds and crosses, 634,612 seeds from 651 crosses for the CP regular (muck-soil) breeding program; 182,486 seeds from 128 crosses made for the Florida CP sand-land breeding program; and 192,451 seeds from 366 crosses made for the Florida both soils or others. There were 83,477 seedlings from 389 crosses transplanted in the Seedling fields in May 2020 at Canal Point and approximately 10,087 seedlings (from 51 crosses) transplanted in Clewiston for sand soils in Florida in the first week of May 2020. Additionally, a total of 6,000 seedlings (from 165 crosses) were transplanted in the progeny tests at Canal Point. There were 7,317 genotypes planted in Stage I in late January – early February 2020 and 1,484 genotypes of CP-19 series planted in Stage II in late November 2019 at Canal Point, Florida. The CP cultivars developed by ARS occupied more than 94% of the sugarcane acreage in Florida in 2019. In 2020, for the 10 consecutive years, all stages of the sand-land selection program were planted on sand soils, beginning with the seedling stage with some specific crosses made for sand soils. In addition, all stages of the selection for the muck-soil CP program were conducted on muck soils. Cultivars released for a specific type of soils are further test on the other type of soils to investigate if these cultivars can be adapted on the contrast soils. In 2020, there were five new varieties released, two (CP 13-1223, CP 13-1954) for muck soils and three (CP 12-1753, CP 13-4100, CPCL 13-4046) for sand soils in Florida. Additionally, CP10-2195, a sand soil cultivar release in 2018, was also recommended and approved for growers to use on muck soils based on its crossover tests in the past years. These new released cultivars are expected to yield well and are resistant/tolerant to most diseases. In research to better understand molecular, physiological, and agronomic bases of biotic and abiotic stress resistance and yield improvement, to improve data accuracy and selection efficiency for high sucrose content and disease resistance, and to help growers meet Best Management Practices, several field and pot studies have been initiated by scientists in Canal Point, Florida. Data collection and analyses are in progress.
Accomplishments
1. Development of high-yielding and disease resistant sugarcane cultivars for commercial production. The biggest challenge sugarcane growers in Florida are facing is still orange rust and brown rust diseases. The rusts recently cause considerable yield losses and an increase in input costs of fungicide applications. Therefore, development of new cultivars with disease resistance, high yields, and high profits using different approaches, such as genetics, genomics, agronomy, physiology, and molecular biology, is our priority of the Canal Point (CP) sugarcane breeding and cultivar development programs. ARS researchers at Canal Point, Florida, collaborated with other institutes and released five new high-yielding sugarcane cultivars (CP 13-1223 and CP 13-1954 for muck soils and CP 12-1753, CP 13-4100, and CPCL 13-4046 for sand soils) with disease resistance / tolerance on 2 June 2020 for growers to use in Florida. The new cultivars will mitigate negative effects of brown and orange rusts and other stresses on sugar yield and profits in Florida.
2. Molecular markers for sugarcane orange rust resistance. Sugarcane orange rust appeared in Western hemisphere 12 years ago and negatively affected the Florida sugarcane industry as well as the Canal Point (CP) cultivar development programs. Scientists in the ARS Canal Point and in University of Florida worked closely from molecular approach to develop markers for improving screening efficiency and enhancing the rust resistance. The phenotypic disease data obtained from the segregating population have been used for marker development. Quantitative trait loci associated with orange rust resistance has been identified and diagnostic markers has been designed. The findings have been presented in the national and international meetings and in peer reviewed Journals. Diagnostic markers are currently being used in the CP sugarcane cultivar development programs.
Review Publications
Coto, A.O., Sandhu, H.S., Zhao, D., Gordon, V.S., Comstock, J.C., Sood, S.G., McCorkle, K.M., Davidson, W.R., Baltazar, M., McCord, P.H., Singh, M.P. 2020. Registration of ‘CP 09-1385’ sugarcane. Journal of Plant Registrations. 14(3):328-339. https://doi.org/10.1002/plr2.20056.
Gordon, V.S., McCord, P.H., Sandhu, H.H., Zhao, D., Davidson, W.R., Comstock, J.C., Sood, S.G., Abbott, T., Singh, M.P., Islam, M.S. 2019. Registration of 'CP 10-1619' sugarcane use on sand soils. Journal of Plant Registrations. 13:353-361. https://doi.org/10.3198/jpr2018.08.0055crc.
Islam, M.S., McCord, P.H., Sandhu, H.S., Zhao, D., Davidson, W.R., Gordon, V.S., Sood, S.G., Comstock, J.C., Singh, M.P., Baltazar, M. 2019. Registration of 'CP 10-2195' sugarcane. Journal of Plant Registrations. 13:368-376. https://doi.org/10.3198/jpr2019.03.0013crc.
Singh, M., Edme, S.J., Zhao, D., Comstock, J.C., Davidson, W.R., Gordon, V.S., Sandhu, H., McCord, P.H., Sood, S.G., Baltazar, M. 2019. Registration of 'CP 09-4153', 'CPCL 09-4160', and 'CP 09-4758' sugarcane for sand soils in Florida. Journal of Plant Registrations. 13:345-352. https://doi.org/10.3198/jpr2018.06.0046crc.
You, Q., Yang, X., Peng, Z., Islam, M.S., Sood, S.G., Luo, Z., Comstock, J.C., Xu, L., Wang, J. 2019. Development of an Axiom sugarcane 100K SNP array for high-resolution genetic map construction and QTL identification. Journal of Theoretical and Applied Genetics. https://doi.org/10.1007/s00122-019-03391-4.
Zhao, D., Davidson, W.R., Gordon, V.S., Islam, M.S., McCord, P.H., Sandhu, H.S., Sood, S.G., Comstock, J.C., Baltazar, M., Singh, M.P. 2020. Registration of ‘CP 11-2248’ sugarcane for the Florida organic soils. Journal of Plant Registrations. 14(3):318-327. https://doi.org/10.1002/plr2.20053.
Zhao, D., Irey, M., LaBorde, C., Hu, C. 2019. Physiological and yield characteristics of 18 sugarcane genotypes grown on a sand soil. Crop Science. 59:2741-2751.
Zhao, D., Momotaz, A., LaBorde, C., Irey, M. 2020. Biomass yield and carbohydrate composition in sugarcane and energy cane grown on mineral soils. Sugar Tech. 22(4):630–640. https://doi.org/10.1007/s12355-020-00807-0.
