Skip to main content
ARS Home » Midwest Area » Ames, Iowa » Corn Insects and Crop Genetics Research » Research » Research Project #434493
Research Project: Genetic and Genomic Characterization of Soybean and Other Legumes

Location: Corn Insects and Crop Genetics Research

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

RNA-Seq of grafted near-isogenic soybean (Glycine max) lines reveals root genotype drives shoot responses to iron deficiency chlorosis - (Peer Reviewed Journal)

Coupling VIGS with short and long-term stress exposure to understand the Fiskeby III iron deficiency stress response Reprint Icon - (Peer Reviewed Journal)
O'Rourke, J.A., Graham, M.A. 2022. Coupling VIGS with short and long-term stress exposure to understand the Fiskeby III iron deficiency stress response. International Journal of Molecular Sciences. 24(1).Article 647. https://doi.org/10.3390/ijms24010647.

Dissection of canopy layer-specific genetic control of leaf angle in Sorghum bicolor by RNA sequencing Reprint Icon - (Peer Reviewed Journal)
Natukunda, M.I., Mantilla-Perez, M.B., Graham, M.A., Liu, P., Salas-Fernandez, M.G. 2022. Dissection of canopy layer-specific genetic control of leaf angle in Sorghum bicolor by RNA sequencing. BMC Genomics. 23. Article 95. https://doi.org/10.1186/s12864-021-08251-4.

Interaction between Rag genes results in a unique synergistic transcriptional response that enhances soybean resistance to soybean aphids Reprint Icon - (Peer Reviewed Journal)
Natukunda, M.I., Hohenstein, J.D., McCabe, C.E., Graham, M.A., Qi, Y., Singh, A.K., MacIntosh, G.C. 2021. Interaction between Rag genes results in a unique synergistic transcriptional response that enhances soybean resistance to soybean aphids. BMC Genomics. 22. Article 887. https://doi.org/10.1186/s12864-021-08147-3.

Comparing early transcriptomic responses of 18 soybean (Glycine max) genotypes to iron stress Reprint Icon - (Peer Reviewed Journal)
Kohlhase, D.R., Mccabe, C.E., Singh, A.K., O'Rourke, J.A., Graham, M.A. 2021. Comparing early transcriptomic responses of 18 soybean (Glycine max) genotypes to iron stress. International Journal of Molecular Sciences. 22(21). Article 11643. https://doi.org/10.3390/ijms222111643.

Mining Fiskeby III and Mandarin (Ottawa) expression profiles to understand iron stress tolerant responses in soybean Reprint Icon - (Peer Reviewed Journal)
O'Rourke, J.A., Morrisey, M.J., Merry, R., Espina, M.J., Lorenz, A.J., Stupar, R.M., Graham, M.A. 2021. Mining Fiskeby III and Mandarin (Ottawa) expression profiles to understand iron stress tolerant responses in soybean. International Journal of Molecular Sciences. 22(20). Article 11032. https://doi.org/10.3390/ijms222011032.

Characterizing short and long term iron stress responses in iron deficiency tolerant and susceptible soybean (Glycine max L. Merr.) Reprint Icon - (Peer Reviewed Journal)
Atencio, L., Salazar, J., Moran Lauter, A., Gonzales, M.D., O'Rourke, J.A., Graham, M.A. 2021. Characterizing short and long term iron stress responses in iron deficiency tolerant and susceptible soybean (Glycine max L. Merr.). Plant Stress. 2.Article 100012. https://doi.org/10.1016/j.stress.2021.100012.

Gene expression responses to sequential nutrient deficiency stresses in soybean. Reprint Icon - (Peer Reviewed Journal)
O'Rourke, J.A., Graham, M.A. 2021. Gene expression responses to sequential nutrient deficiency stresses in soybean. International Journal of Molecular Sciences. 22(3). Article 1252. https://doi.org/10.3390/ijms22031252.

New tools for characterizing early brown stem rot disease resistance signaling in soybean Reprint Icon - (Peer Reviewed Journal)
McCabe, C.E., Graham, M.A. 2020. New tools for characterizing early brown stem rot disease resistance signaling in soybean. The Plant Genome. 13(3). Article e20037. https://doi.org/10.1002/tpg2.20037.

Examining short-term responses to a long-term problem: RNA-seq analyses of iron deficiency chlorosis tolerant soybean Reprint Icon - (Peer Reviewed Journal)
Moran Lauter, A., Rutter, L., Cook, D., O'Rourke, J.A., Graham, M.A. 2020. Examining short-term responses to a long-term problem: RNA-seq analyses of iron deficiency chlorosis tolerant soybean. International Journal of Molecular Sciences. 21:3591. https://doi.org/10.3390/ijms21103591.

Soybean root system architecture trait study through genotypic, phenotypic, and shape-based clusters Reprint Icon - (Peer Reviewed Journal)
Falk, K.G., Juberi, T.Z., O'Rourke, J.A., Singh, A., Sarkar, S., Ganapathysubramanian, B., Singh, A.K. 2020. Soybean root system architecture trait study through genotypic, phenotypic and shape-based clusters. Plant Phenomics. https://doi.org/10.34133/2020/1925495.

Dynamic gene expression changes in response to micronutrient, macronutrient, and multiple stress exposures in soybean Reprint Icon - (Peer Reviewed Journal)
O'Rourke, J.A., Mccabe, C.E., Graham, M.A. 2020. Dynamic gene expression changes in response to micronutrient, macronutrient, and multiple stress exposures in soybean. Functional and Integrative Genomics. 20:321-341. https://doi.org/10.1007/s10142-019-00709-9.

Visualization methods for differential expression analysis Reprint Icon - (Peer Reviewed Journal)
Rutter, L., Moran Lauter, A.N., Graham, M.A., Cook, D. 2019. Visualization methods for differential expression analysis. BMC Bioinformatics. 20:458. https://doi.org/10.1186/s12859-019-2968-1.