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ARS Home » Northeast Area » Beltsville, Maryland (BARC) » Beltsville Agricultural Research Center » Environmental Microbial & Food Safety Laboratory » Research » Research Project #440225
Research Project: Evaluation of Genetic and Management Factors to Reduce Foodborne Pathogens and Antimicrobial Resistance in Dairy Cattle

Location: Environmental Microbial & Food Safety Laboratory

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)

Disinfection of foodborne bacteria using the Contamination Sanitization Inspection and Disinfection (CSI-D) device bg Reprint Icon - (Peer Reviewed Journal)
Sanders, J., Alarcorn, V., Marquis, G., Tabb, A., Van Kessel, J.S., Sonnier, J.L., Haley, B.J., Baek, I., Qin, J., Kim, M.S., Vasefi, F., Sokolov, S., Hellberg, R. 2024. Disinfection of foodborne bacteria using the Contamination Sanitization Inspection and Disinfection (CSI-D) device bg. Food Microbiology. 10(9): Article e30490. https://doi.org/10.1016/j.heliyon.2024.e30490.

Escherichia coli isolated from dairy animal feces encoding fosA7.5, conferring resistance to the reserve group antibiotic Fosfomycin Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Kim, S., Van Kessel, J.S. 2024. Escherichia coli isolated from dairy animal feces encoding fosA7.5, conferring resistance to the reserve group antibiotic Fosfomycin. Foodborne Pathogens and Disease. 10: e0132. https://doi.org/10.1089/fpd.2023.0132.

Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Salaheen, S., Kim, S., Van Kessel, J.S. 2024. Virulome analysis of Escherichia coli ST117 from bovine sources identifies similarities and differences with strains isolated from other food animals. PLOS ONE. 10:e0296514. https://doi.org/10.1371/journal.pone.0296514.

Microdiversity of Salmonella Kentucky during an outbreak in a dairy herd Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Karns, J., Van Kessel, J.S., Haley, B.J. 2024. Microdiversity of Salmonella Kentucky during an outbreak in a dairy herd. Foodborne Pathogens and Disease. 21(5): e0090. https://doi.org/10.1089/fpd.2023.0090.

Genome-wide analysis of Escherichia coli isolated from dairy animals identifies virulence factors and genes enriched in multidrug-resistant strains Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Kim, S., Salaheen, S., Hovingh, E., Van Kessel, J.S. 2023. Genome-wide analysis of Escherichia coli isolated from dairy animals identifies virulence factors and genes enriched in multidrug-resistant strains. Antibiotics. 12(10): e1559. https://doi.org/10.3390/antibiotics12101559.

Disinfection of Escherichia coli using the contamination sanitization inspection and disinfection (CSI-D) system Reprint Icon - (Proceedings)
Sanders, J., Alacom, V., Marquis, G., Tabb, A., Van Kessel, J.S., Sonnier, J.L., Haley, B.J., Baek, I., Qin, J., Kim, M.S., Vasefi, F., Sokolov, S., Hellberg, R. 2023. Disinfection of Escherichia coli using the contamination sanitization inspection and disinfection (CSI-D) system. Proceedings of SPIE. 125450F. https://doi.org/10.1117/12.2664049.

Genomic diversity of antimicrobial-resistant and Shiga toxin gene-harboring non-O157 Escherichia coli from dairy calves Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Springer, H., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2023. Genomic diversity of antimicrobial-resistant and Shiga toxin gene-harboring non-O157 Escherichia coli from dairy calves. Journal of Global Antimicrobial Resistance. 33:164-170. https://doi.org/10.1016/j.jgar.2023.02.022.

Characterization of antimicrobial resistance genes and virulence factors in the genomes of Escherichia coli ST69 isolates from preweaned dairy calves and their phylogenetic relationship with poultry and human clinical strains Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Springer, H., Hovingh, E., Van Kessel, J.S., Haley, B.J. 2023. Characterization of antimicrobial resistance genes and virulence factors in the genomes of Escherichia coli ST69 isolates from preweaned dairy calves and their phylogenetic relationship with poultry and human clinical strains. Microbial Drug Resistance. https://doi.org/10.1089/mdr.2022.0266.

Large scale genomic analysis identifies antimicrobial resistant and potentially pathogenic escherichia coli from dairy calves at commercial settings - (Abstract Only)

Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro during infection of bovine epithelial cells Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro during infection of bovine epithelial cells. BMC Genomics. https://doi.org/10.1186/s12864-022-08725-z.

Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells Reprint Icon - (Peer Reviewed Journal)
Salaheen, S., Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Differences between the global transcriptomes of Salmonella enterica serovars Dublin and Cerro infecting bovine epithelial cells. BMC Genomics. https://doi.org/10.1186/s12864-022-08725-z.

Genomic characterization of antimicrobial-resistant Escherichia coli isolated from dairy operations Reprint Icon - (Peer Reviewed Journal)
Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Genomic characterization of antimicrobial-resistant Escherichia coli isolated from dairy operations. Journal of Global Antimicrobial Resistance. https://doi.org.

Virulome and genome analyses identifies associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves Reprint Icon - (Peer Reviewed Journal)
Haley, B.J., Kim, S., Salaheen, S., Hovingh, E., Van Kessel, J.S. 2022. Virulome and genome analyses identifies associations between antimicrobial resistance genes and virulence factors in highly drug-resistant Escherichia coli isolated from veal calves. PLoS ONE. 17(3):0265445. https://doi.org/10.1371/journal.pone.0265445.

One Health Enteric Package: Expanded and standardized metadata for enteric genomic epidemiology in the US (GenFS Metadata workgroup) - (Abstract Only)

Draft genome sequence of an Escherichia coli ST38 strain isolated from dry cow feces on a commercial dairy operation Reprint Icon - (Peer Reviewed Journal)
Kim, S., Van Kessel, J.S., Haley, B.J. 2022. Draft genome sequence of an Escherichia coli ST38 strain isolated from dry cow feces on a commercial dairy operation. Microbiology Resource Announcements. https://doi.org/10.1128.

FI: The fecobiome initiative Reprint Icon - (Review Article)
Sapountzis, P., Teseo, S., Otani, S., Aarestrup, F., Forano, E., Suen, G., Tsiamis, G., Van Kessel, J.S., Haley, B.J., Huws, S. 2022. FI: The fecobiome initiative. Foodborne Pathogens and Disease. 19(17):441-447. https://doi.org/10.1089/fpd.2021.0082.

One health enteric package v1.0: Expanded and standardized metadata for enteric genomic epidemiology in the U.S - (Abstract Only)