Polygenic scores and Mendelian randomization identify plasma proteins causally implicated in Alzheimer's disease

Authors: CAMMANN, DAVIS - University Of Nevada Las Vegas, Las Vegas, Nv; LU, YIMEI - University Of Nevada Las Vegas, Las Vegas, Nv; ROTTER, JEROME - Harbor-Ucla Medical Center; WOOD, ALEXIS - Children'S Nutrition Research Center (CNRC); CHEN, JINGCHUN - University Of Nevada Las Vegas, Las Vegas, Nv

Submitted to: Frontiers in Neuroscience
Publication Type: Peer Reviewed Journal
Publication Acceptance Date: 7/1/2024
Publication Date: 7/23/2024
Citation: Cammann, D.B., Lu, Y., Rotter, J.I., Wood, A.C., Chen, J. 2024. Polygenic scores and Mendelian randomization identify plasma proteins causally implicated in Alzheimer's disease. Frontiers in Neuroscience. 18. Article 1404377. https://doi.org/10.3389/fnins.2024.1404377.
DOI: https://doi.org/10.3389/fnins.2024.1404377

Interpretive Summary: Obesity, and obesity related complications, have recently emerged as risk factors for Alzheimer's ddisease and related dementias. However, why these conditions are linked is not clear. Obesity is associated with increased inflammation in the body, and as people age, the blood-brain barrier becomes more permeable, allowing proteins from the bloodstream to enter the brain and trigger neuroinflammation. This study explored the role of neuroinflammation in Late-Onset Alzheimer’s disease (LOAD). A genome-wide association study (GWAS) of 90 plasma proteins that indicate neuroinflammation was conducted, and the results were analyzed for associations with the likelihood of developing LOAD. Four neuroinflammation-related plasma proteins were genetically linked to LOAD, with additional analyses suggesting one protein was causally linked to the development of LOAD. These findings highlight the complex interplay between genetics, inflammation, and Alzheimer's disease, underscoring the need for further investigation into how these plasma proteins could be targeted for potential therapies or biomarkers in the future.

Technical Abstract: An increasing body of evidence suggests that neuroinflammation is one of the key drivers of Late-Onset Alzheimer's disease (LOAD) pathology. Due to increased permeability of the blood-brain barrier (BBB) in older age, peripheral plasma proteins can infiltrate the central nervous system (CNS) and drive neuroinflammation through interactions with neurons and glia cells. Because these inflammatory factors are heritable, a greater understanding of their genetic relationship with LOAD could identify new biomarkers that contribute to LOAD pathology or protection against it. We used a GWAS of 90 different plasma proteins (n=17,747) to create polygenic scores (PGSs) in an independent discovery (Cases=1,852, Controls=1,990) and replication (Cases=799, Controls=778) cohort. Multivariate logistic regression was used to associate the plasma protein PGSs with LOAD diagnosis while controlling for age, sex, principal components 1-2, and the number of APOE e4 alleles as covariates. After meta-analyzing the PGS-LOAD associations between the two cohorts, we next performed a two-sample Mendelian Randomization (MR) analysis using the summary statistics of significant plasma protein level PGSs in the meta-analysis as an exposure, and a GWAS of clinically-diagnosed LOAD (Cases=21,982, Controls=41,944) as an outcome to explore possible causal relationships between the two. We identified 4 plasma protein level PGSs that were significantly associated (FDR adjusted P<0.05) with LOAD in a meta-analysis of the discovery and replication cohorts: CX3CL1, HGF, TIE2, and MMP-3. When these 4 plasma proteins were used as exposures in MR with LOAD liability as the outcome, plasma levels of HGF were inferred to have a negative causal relationship with the disease when SNPs used as instrumental variables were not restricted to cis-variants (OR/95%CI=0.945/0.906-0.984, P=0.005). Our results show that plasma HGF has a negative causal relationship with LOAD liability that is driven by pleiotropic SNPs possibly involved in other pathways. These findings suggest a low transferability between PGS and MR approaches, and future research should explore ways in which LOAD and the plasma proteome may interact.