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Philipp W Simon
Research Leader


Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Root exudation and rhizosphere microbial recruitment are influenced by novel plant trait diversity in carrot genotypes - (Peer Reviewed Journal)
Anderson, H., Cagle, G., Majumder, E., Silva, E., Dawson, J., Simon, P.W., Freedman, Z. 2024. Root exudation and rhizosphere microbial recruitment are influenced by novel plant trait diversity in carrot genotypes. Soil Biology and Biochemistry. 197. https://doi.org/10.1016/j.soilbio.2024.109516.
Shoot-growth variation in cultivated carrot (Daucus carota L.) genetic resources - (Peer Reviewed Journal)
Loarca, J., Liou, M., Dawson, J., Simon, P.W. 2024. Shoot-growth variation in cultivated carrot (Daucus carota L.) genetic resources. Frontiers in Plant Science. Volume 15. https://doi.org/10.3389/fpls.2024.1342512.
Flowering trait ontology facilitates utilization of biennial carrot (Daucus carota L.) genetic resources - (Peer Reviewed Journal)
Loarca, J., Liou, M., Dawson, J., Simon, P.W. 2024. Flowering trait ontology facilitates utilization of biennial carrot (Daucus carota L.) genetic resources. Frontiers in Plant Science. 15:1342-2513. https://doi.org/10.3389/fpls.2024.1342513.
Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots - (Peer Reviewed Journal)
Coe, K., Bostan, H., Rolling, W.R., Turner-Hissong, S., Macko-Podgorni, A., Senalik, D.A., Liu, S., Seth, R., Curaba, J., Fentie Mengist, M., Grzebelus, D., Van Deynze, A., Dawson, J., Ellison, S., Simon, P.W., Iorizzo, M. 2023. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots. Nature Plants. 9:1643–1658. https://doi.org/10.1038/s41477-023-01526-6.
The carrot SCRI project taps into carrot diversity to develop genetic and genomic resources, evaluate nutrient bioavailability, and assess factors influencing grower and consumer decisions - (Peer Reviewed Journal)
Simon, P.W., Rolling, W.R., Senalik, D.A., Dawson, J., Tanumihardjo, S., Spalding, E., Iorizzo, M., Van Deynze, A., Hill, T., Sumner, D., Goodrich, B., Ullman, K., Roberts, P., du Toit, L., Waters, T., Colley, M., McKenzie, L., Sidhu, J., Diaz, J., Meng, Y. 2024. The carrot SCRI project taps into carrot diversity to develop genetic and genomic resources, evaluate nutrient bioavailability, and assess factors influencing grower and consumer decisions. Acta Horticulturae. 1393:277-286. https://doi.org/10.17660/ActaHortic.2024.1393.36.
Genetic mechanisms of pigment accumulation in carrot colours - ()
Simon, P.W. 2023. Genetic mechanisms of pigment accumulation in carrot colours . Open Access Government. https://doi.org.10.56367/OAG-039-10810.
Characterization of purple carrot germplasm for antioxidant capacity and root concentration of anthocyanins, phenolics, and carotenoids - (Peer Reviewed Journal)
Perez, M.B., Carvajal, S., Beretta, V., Bannoud, F., Fangio, M.F., Berli, F., Fontana, A., Salomon, M.V., Gozalez, R., Valerga, L., Altamirano, J.C., Yildiz, M., Iorizzo, M., Simon, P.W., Cavagnaro, P.C. 2023. Characterization of purple carrot germplasm for antioxidant capacity and root concentration of anthocyanins, phenolics, and carotenoids. Plants. 12(9). Article 1796. https://doi.org/10.3390/plants12091796.
Carrot genotypes differentially alter soil microbial communities and scavenge nitrogen from organic materials in soil - (Peer Reviewed Journal)
Trivino, N., Rodriguez-Sanchez, A., Filley, T., Camberato, J., Colley, M., Simon, P.W., Hoagland, L. 2023. Carrot genotypes differentially alter soil microbial communities and scavenge nitrogen from organic materials in soil. Frontiers in Plant Science. Article (the author) 2023. https://doi.org/10.1007/s11104-023-05892-0.
Variation in seed germination and amylase activity of diverse carrot [daucus carota (L.)] germplasm under simulated drought stress - (Peer Reviewed Journal)
Nijabat, A., Manzoor, S., Faiz, S., Naveed, N., Bolton, A., Khan, B., Ali, A., Simon, P.W. 2023. Variation in seed germination and amylase activity of diverse carrot [daucus carota (L.)] germplasm under simulated drought stress. HortScience. 58(2):205-214. https://doi.org/10.21273/HORTSCI16806-22.
Development of carrot nutraceutical products as an alternative supplement for the prevention of disease - (Peer Reviewed Journal)
Riaz, N., Yousaf, Z., Yasmin, Z., Munawar, M., Younas, A., Rashid, M., Aftab, A., Shamsheer, H., Yasin, H., Najeebullah, M., Simon, P.W. 2022. Development of carrot nutraceutical products as an alternative supplement for the prevention of disease. Frontiers in Nutrition. 8:787351. https://doi.org/10.3389/fnut.2021.787351.
Genetic characterization of carrot root shape and size using genome-wide association analysis and genomic-estimated breeding values. - (Peer Reviewed Journal)
Brainard, S., Ellison, S., Simon, P.W., Dawson, J., Goldman, I. 2021. Genetic characterization of carrot root shape and size using genome-wide association analysis and genomic-estimated breeding values.. Theoretical and Applied Genetics. 135:605–622. https://doi.org/10.1007/s00122-021-03988-8.
CarrotOmics: a genetics and comparative genomics database for carrot (Daucus carota) - (Peer Reviewed Journal)
Rolling, W.R., Senalik, D.A., Iorizzo, M., Ellison, S., Van Deynze, A., Simon, P.W. 2022. CarrotOmics: a genetics and comparative genomics database for carrot (Daucus carota). Horticulture Research. 2022, 1-8. https://doi.org/10.1093/database/baac079.
Genetic and transcription profile analysis of tissue-specific anthocyanin pigmentation in the carrot root phloem - (Peer Reviewed Journal)
Bannoud, F., Carvajal, S., Ellison, S., Senalik, D.A., Gomez Talquenca, S., Massimo, I., Simon, P.W., Cavagnaro, P. 2021. Genetic and transcription profile analysis of tissue-specific anthocyanin pigmentation in the carrot root phloem. Genes. 12(10), 1464. https://doi.org/10.3390/genes12101464.
The influence of the Or and Carotene Hydroxylase genes on carotenoid accumulation in orange carrots [Daucus carota (L.)] - (Peer Reviewed Journal)
Coe, K., Ellison, S., Senalik, D.A., Dawson, J., Simon, P.W. 2021. The influence of the Or and Carotene Hydroxylase genes on carotenoid accumulation in orange carrots [Daucus carota (L.)]. Theoretical and Applied Genetics. 134:3351–3362. https://doi.org/10.1007/s00122-021-03901-3.
Tapping into wild carrot diversity for new sources of abiotic stress tolerance to strengthen carrot pre-breeding in Bangladesh and Pakistan - (Peer Reviewed Journal)
Simon, P.W., Rolling, W.R., Senalik, D.A., Bolton, A., Rahim, M.A., Mannan, M., Islam, F., Ali, A., Nijabat, A., Naveed, N.H., Hussain, R., Ijaz, A. 2021. Tapping into wild carrot diversity for new sources of abiotic stress tolerance to strengthen carrot pre-breeding in Bangladesh and Pakistan. Crop Science. 61(1):163-176. https://doi.org/10.1002/csc2.20333.
What is truth: consensus and discordance in next-generation phylogenetic analyses of Daucus - (Peer Reviewed Journal)
Spooner, D.M., Ruess, H., Ellison, S.L., Senalik, D.A., Simon, P.W. 2020. What is truth: consensus and discordance in next-generation phylogenetic analyses of Daucus. Journal of Systematics and Evolution. 58(6):1059-1070. https://doi.org/10.1111/jse.12678.
Carrots and related Apiaceae crops, 2nd edition - ()
Geoffriau, E., Simon, P.W. (editors). 2021. Carrots and related Apiaceae crops, 2nd edition. Boston: CAB International. 346 p.
Carrot anthocyanins genetics and genomics: Status and perspectives to optimize its application for the food colorant industry - (Peer Reviewed Journal)
Iorizzo, M., Curaba, J., Pottorff, M., Ferruzzi, M., Simon, P.W., Cavagnaro, P. 2020. Carrot anthocyanins genetics and genomics: Status and perspectives to optimize its application for the food colorant industry. Genes. 11(8). Article 906. https://doi.org/10.3390/genes11080906.
Changes in the core endophytic mycobiome of carrot taproots in response to crop management and genotype - (Peer Reviewed Journal)
Abdelrazek, S., Choudhari, S., Thimmapuram, J., Simon, P.W., Colley, M., Mengiste, T., Hoagland, L. 2020. Changes in the core endophytic mycobiome of carrot taproots in response to crop management and genotype. Scientific Reports. 10. Article 13685. https://doi.org/10.1038/s41598-020-70683-x.
Cell membrane stability and relative cell injury in response to heat stress during early and late seedling stages of diverse carrot (Daucus carota L.) germplasm - (Peer Reviewed Journal)
Nijabat, A., Bolton, A., Mahmood-Ur-Rehman, M., Ijaz Shah, A., Hussain, R., Naveed, N., Ali, A., Simon, P.W. 2020. Cell membrane stability and relative cell injury in response to heat stress during early and late seedling stages of diverse carrot (Daucus carota L.) germplasm. Hortscience Proceedings. 55(9):1446-1452. https://doi.org/10.21273/HORTSCI15058-20.
Mining for candidate genes controlling secondary growth of the carrot storage root - (Peer Reviewed Journal)
Macko-Podgórni, A., Stelmach, K., Kwolek, K., Machaj, G., Ellison, S., Senalik, D.A., Simon, P.W., Grzebelus, D. 2020. Mining for candidate genes controlling secondary growth of the carrot storage root. International Journal of Molecular Sciences. 21(12). Article 4263. https://doi.org/10.3390/ijms21124263.
Carrot endophytes: role of crop management system and genotype on composition and antagonistic activity towards Alternaria dauci - (Peer Reviewed Journal)
Abdelrazek, S., Simon, P.W., Colley, M., Aime, C., Mengiste, T., Hoagland, L. 2020. Carrot endophytes: role of crop management system and genotype on composition and antagonistic activity towards Alternaria dauci. PLoS ONE. 15(6). Article e0233783. https://doi.org/10.1371/journal.pone.0233783.
Carrot endophytes: role of crop management system and genotype on composition and antagonistic activity towards Alternaria dauci - (Peer Reviewed Journal)
Abdelrazazek, S., Simon, P.W., Colley, M., Aime, C., Mengiste, T., Hoagland, L. 2020. Carrot endophytes: role of crop management system and genotype on composition and antagonistic activity towards Alternaria dauci. PLoS One. 1/26 (2020). https://doi.org/10.1371/journal.pone.0233783.
Overlapping vitamin A interventions with provitamin A carotenoids and preformed vitamin A fortificant cause high liver retinol stores in male mongolian gerbils - (Peer Reviewed Journal)
Sowa, M., Mourao, L., Sheftel, J., Kaeppler, M., Simons, G., Davis, C.R., Simon, P.W., Pixley, K.V., Tanumihardjo, S.A. 2020. Overlapping vitamin A interventions with provitamin A carotenoids and preformed vitamin A fortificant cause high liver retinol stores in male mongolian gerbils. Journal of Nutrition. 150(11):2912-2923. https://doi.org/10.1093/jn/nxaa142.
Subspecies variation of Daucus carota coastal (“gummifer”) morphotypes using genotyping-by-sequencing - (Peer Reviewed Journal)
Flores, F.M., Crespo, M.B., Simon, P.W., Ruess, H.M., Reitsma, K., Geoffriau, E., Allender, C., Mezghani, N., Spooner, D.M. 2020. Subspecies variation of Daucus carota coastal (“gummifer”) morphotypes using genotyping-by-sequencing. Systematic Botany. Volume 45, Number 3, September 2020, pp. 688-702(15). https://doi.org/10.1600/036364420X15935294613527.
Mitochondrial DNA sequence phylogeny of daucus - (Peer Reviewed Journal)
Spooner, D.M., Ruess, H., Simon, P.W., Senalik, D.A. 2020. Mitochondrial DNA sequence phylogeny of daucus. Systematic Botany. Volume 46 / Pages 403-408(6). https://doi.org/10.1600/036364420X15862837791311.
Identification of an SCPL gene controlling anthocyanin acylation in carrot (Daucus carota L.) root - (Peer Reviewed Journal)
Curaba, J., Bostan, H., Cavagnaro, P., Senalik, D.A., Mengist, M., Zhao, Y., Simon, P.W., Iorizzo, M. 2020. Identification of an SCPL gene controlling anthocyanin acylation in carrot (Daucus carota L.) root. Frontiers in Plant Science. 10(1770):1-17. https://doi.org/10.3389/fpls.2019.01770.
Biodiversity and conservation of carrot wild relatives in Tunisia: An overview - (Peer Reviewed Journal)
Mezghani, N., Spooner, D.M., Mezghani, N., Simon, P.W., Ruess, H., Ben Amor, J., Tarchoun, N. 2019. Biodiversity and conservation of carrot wild relatives in Tunisia: An overview. Acta Horticulturae. Pages 143 - 150. https://doi.org/10.17660/ActaHortic.2019.1264.17.
Investigating Carrot Colors to Produce Healthier Crops - ()
Simon, P.W. 2019. Investigating Carrot Colors to Produce Healthier Crops . Scientia Global. https://doi.org/10.33548/SCIENTIA433.
PTIS potato herbarium transferred to WIS, the Wisconsin State Herbarium - (Peer Reviewed Journal)
Spooner, D.M., Simon, P.W., Bamberg, J.B., Cameron, K.M. 2019. PTIS potato herbarium transferred to WIS, the Wisconsin State Herbarium. American Journal of Potato Research. https://doi.org/10.1007/s12230-019-09751-6.
Distributions and conservation status of carrot (Daucus L.) wild relatives in Tunisia: A case study in the Western Mediterranean basin - (Peer Reviewed Journal)
Mezghani, N., Khoury, C.K., Carver Jr, D.P., Achicanoy, H.A., Simon, P.W., Spooner, D.M. 2019. Distributions and conservation status of carrot (Daucus L.) wild relatives in Tunisia: A case study in the Western Mediterranean basin. Crop Science. 59:1-12. https://doi.org/10.2135/cropsci2019.05.0333.
Extended studies of interspecific relationships of Daucus using DNA sequences from ten nuclear orthologs - (Peer Reviewed Journal)
Fernando Martínez, F., Crespo, M.B., Geoffriau, E., Allender, C., Ruess, H.M., Simon, P.W., Spooner, D.M. 2019. Extended studies of interspecific relationships of Daucus using DNA sequences from ten nuclear orthologs. Botanical Journal of the Linnean Society. 164-187. https://doi.org/10.1093/botlinnean/boz042.
The carrot genome - ()
Simon, P.W., Iorizzo, M., Grzebelus, D., Baranski, R. 2019. The carrot genome. Cham, Switzerland:Springer Nature Switzerland AG. 372 p. https://doi.org/10.1007/978-3-030-03389-7.
Variation for heat tolerance during seed germination in diverse carrot [Daucus carota (L.)] germplasm - (Peer Reviewed Journal)
Bolton, A., Nijabat, A., Mahmood-Ur-Rehman, M., Naveed, N., Mannan, A., Ali, A., Rahim, M., Simon, P.W. 2019. Variation for heat tolerance during seed germination in diverse carrot [Daucus carota (L.)] germplasm. HortScience. 54(9):1470–1476. https://doi.org/10.21273/HORTSCI14144-19.
Dissecting the genetic control of root and leaf tissue-specific anthocyanin pigmentation in carrot (Daucus carota L.) - (Peer Reviewed Journal)
Bannoud, F., Ellison, S., Paolinelli, M., Horejsi, T.F., Senalik, D.A., Fanzone, M., Iorizzo, M., Simon, P.W., Cavagnaro, P. 2019. Dissecting the genetic control of root and leaf tissue-specific anthocyanin pigmentation in carrot (Daucus carota L.). Theoretical and Applied Genetics. 132:2485–2507. https://doi.org/10.1007/s00122-019-03366-5.
Carrot leaves maintain liver vitamin A concentrations in mongolian gerbils regardless of the alpha- to beta-carotene ratio when beta-carotene equivalents are equalized - (Peer Reviewed Journal)
Titcomb, T.J., Kaeppler, M.S., Sandoval Cates, S.B., Shannon, J.M., Simon, P.W., Tanumihardjo, S.A. 2019. Carrot leaves maintain liver vitamin A concentrations in male mongolian gerbils regardless of the ratio of alpha- to beta-carotene when beta-carotene equivalents are equalized. Journal of Nutrition. 149(6):951-958. https://doi.org/10.1093/jn/nxz036.
Genetic markers to detect introgression of cultivar genes in wild carrot populations - (Peer Reviewed Journal)
Palmieri Rocha, L., Ellison, S.L., Senalik, D.A., Simon, P.W., Brunet, J. 2020. Genetic markers to detect introgression of cultivar genes in wild carrot populations. Acta Horticulturae. 1264:165-174. https://doi.org/https://doi.org/10.17660/ActaHortic.2019.1264.20.
Comparison of representative and custom methods of generating core subsets of a carrot germplasm collection - (Peer Reviewed Journal)
Corak, K.E., Ellison, S.L., Simon, P.W., Spooner, D.M., Dawson, J.C. 2019. Comparison of representative and custom methods of generating core subsets of a carrot germplasm collection. Crop Science. 59(3):1107-1121. https://doi.org/10.2135/cropsci2018.09.0602.
A cluster of MYB transcription factors regulates anthocyanin biosynthesis in carrot (Daucus carota L.) root and petiole - (Peer Reviewed Journal)
Iorizzo, M., Cavagnaro, P.F., Bostan, H., Zhao, Y., Zhang, J., Simon, P.W. 2019. A cluster of MYB transcription factors regulates anthocyanin biosynthesis in carrot (Daucus carota L.) root and petiole. Frontiers in Plant Science. 9:1927. https://doi.org/10.3389/fpls.2018.01927.
An automated, high-throughput image analysis pipeline enables genetic studies of shoot and root morphology in carrot (Daucus carota L.) - (Peer Reviewed Journal)
Turner, S.D., Ellison, S.L., Senalik, D.A., Simon, P.W., Spalding, E.P., Miller, N.D. 2018. An automated, high-throughput image analysis pipeline enables genetic studies of shoot and root morphology in carrot (Daucus carota L.). Frontiers in Plant Science. 9(1703):1-17. https://doi.org/10.3389/fpls.2018.01703.
A novel carotenoid accumulation mechanism revealed through analysis of genetic structure and domestication in carrot (Daucus carota L.) - (Peer Reviewed Journal)
Ellison, S.L., Luby, C., Corak, K., Coe, K.M., Senalik, D.A., Iorizzo, M., Goldman, I., Simon, P.W., Dawson, J. 2018. A novel carotenoid accumulation mechanism revealed through analysis of genetic structure and domestication in carrot (Daucus carota L.). Genetics. 210(4):1497-1508. https://doi.org/10.1534/genetics.118.301299.
Genetic markers to detect introgression of cultivar genes into wild carrot populations - (Abstract Only)
Variation for salinity tolerance during seed germination in diverse carrot [Daucus carota (L.)] germplasm - (Peer Reviewed Journal)
Bolton, A., Simon, P.W. 2019. Variation for salinity tolerance during seed germination in diverse carrot [Daucus carota (L.)] germplasm. HortScience. 54(1):38-44. https://doi.org/10.21273/HORTSCI13333-18.
Extended studies of interspecific relationships of Daucus (Apiaceae) using DNA sequences from ten nuclear orthologs - (Abstract Only)
Spooner, D.M., Simon, P.W., Ruess, H.M., Geoffriau, E., Allender, C., Martinez Flores, F. 2018. Extended studies of interspecific relationships of Daucus (Apiaceae) using DNA sequences from ten nuclear orthologs. 39th International Carrot Conference. Madison, Wisconsin. August 21-24, 2018.
Subspecies variation of Daucus carota (Apiaceae) using genotyping-by-sequencing - (Abstract Only)
Spooner, D.M., Maartinez Flores, F., Simon, P.W., Ruess, H.M., Reitsma, K., Geoffriau, E., Allender, C., Mezghani, N. 2018. Subspecies variation of Daucus carota (Apiaceae) using genotyping-by-sequencing. 39th International Carrot Conference. August 21-24, 2018. Madison, Wisconsin. p. 16.
Carrot organelle genomes: organization, diversity and inheritance - ()
Spooner, D.M., Simon, P.W., Senalik, D.A., Iorizzo, M. 2019. Carrot organelle genomes: organization, diversity and inheritance. In: P. Simon, M. Iorizzo, D. Grzebelus, and R. Baransky, editors. The Carrot Genome. Springer Nature: Cham, Switzerland. p. 9-26.
Genotyping-by-sequencing reveals the origin of the Tunisian relatives of cultivated carrot - (Peer Reviewed Journal)
Mezghani, N., Ruess, H.M., Tarchoun, N., Ben Amor, J., Simon, P.W., Spooner, D.M. 2018. Genotyping-by-sequencing reveals the origin of the Tunisian relatives of cultivated carrot. Genetic Resources and Crop Evolution. 65:1359-1368. https://doi.org/10.1007/s10722-018-0619-4.
Genotyping-by-sequencing reveals the origin of the Tunisian relatives of cultivated carrot - (Peer Reviewed Journal)
Mezghani, N., Ruess, H.M., Tarchoun, N., Ben Amor, J., Simon, P.W., Spooner, D.M. 2018. Genotyping-by-sequencing reveals the origin of the Tunisian relatives of cultivated carrot. Genetic Resources and Crop Evolution. 65:1359-1368. https://doi.org/10.1007/s10722-018-0619-4.
Sustaining the future of plant breeding: The critical role of the USDA-ARS National Plant Germplasm System - (Peer Reviewed Journal)
Byrne, P.F., Volk, G.M., Gardner, C.A., Gore, M.A., Simon, P.W., Smith, S. 2018. Sustaining the future of plant breeding: The critical role of the USDA-ARS National Plant Germplasm System. Crop Science. 58(2):451-468. https://doi.org/10.2135/cropsci2017.05.0303.
Dissecting the genetic architecture of shoot growth in carrot (Daucus carota, L.) using a diallel mating design - (Peer Reviewed Journal)
Turner, S.D., Maurizio, P.L., Valdar, W., Yandell, B.S., Simon, P.W. 2017. Dissecting the genetic architecture of shoot growth in carrot (Daucus carota, L.) using a diallel mating design. G3, Genes/Genomes/Genetics. 8(2):411-426. https://doi.org/10.1534/g3.117.300235.
Germplasm morgue or gold mine? Enhancing the value of plant genetic resource collections for plant breeding - (Abstract Only)
Byrne, P., Volk, G.M., Gardner, C.A., Gore, M., Simon, P.W., Smith, S. 2017. Germplasm morgue or gold mine? Enhancing the value of plant genetic resource collections for plant breeding. National Association of Plant Breeders. Page 1.
Fine mapping, transcriptome analysis, and marker development for Y2, the gene that conditions beta-carotene accumulation in carrot (Daucus carota L.) Reprint Icon - (Peer Reviewed Journal)
Ellison, S., Senalik, D., Bostan, H., Iorizzo, M., Simon, P. 2017. Fine mapping, transcriptome analysis, and marker development for Y2, the gene that conditions beta-carotene accumulation in carrot (Daucus carota L.). G3, Genes/Genomes/Genetics. 7(8)2665-2675. doi: 10.1534/g3.117.043067.
Phylogenetic prediction of Alternaria leaf blight resistance in wild and cultivated species of carrots (Daucus, Apiaceae) - (Peer Reviewed Journal)
Arbizu, C., Tas, P., Simon, P.W., Spooner, D.M. 2017. Phylogenetic prediction of Alternaria leaf blight resistance in wild and cultivated species of carrots (Daucus, Apiaceae). Crop Science. 57:2645–2653. doi: 10.2135/cropsci2017.02.0078.
Multivariate analysis of morphological diversity among closely related Daucus species and subspecies in Tunisia Reprint Icon - (Peer Reviewed Journal)
Mezghani, N., Ben Amor, J., Spooner, D.M., Simon, P.W., Mezghani, N., Boubaker, H., M'Rad Namji, A., Rouz, S., Hannachi, C., Neffati, M., Tarchoun, N. 2017. Multivariate analysis of morphological diversity among closely related Daucus species and subspecies in Tunisia. Genetic Resources and Crop Evolution. 64(8):2145-2159. https://doi.org/10.1007/s10722-017-0505-5.
Effects of direct and gradual salinity exposure on carrot (Daucus carota L.) seeds and recovery response Reprint Icon - (Peer Reviewed Journal)
Shiyab, S., Simon, P. 2017. Effects of direct and gradual salinity exposure on carrot (Daucus carota L.) seeds and recovery response. Academia Journal of Biotechnology (AJB). 5(3):038-043. doi: 10.15413/ajb.2017.0127.
Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae):Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid Reprint Icon - (Peer Reviewed Journal)
Spooner, D.M., Ruess, H., Iorizzo, M., Senalik, D., Simon, P. 2017. Entire plastid phylogeny of the carrot genus (Daucus, Apiaceae): Concordance with nuclear data and mitochondrial and nuclear DNA insertions to the plastid. American Journal of Botany. 104(2):296-312. doi: 10.3732/ajb.1600415.
Plant breeding and genetics - (Peer Reviewed Journal)
Baenziger, P.S., Mumm, R., Bernardo, R., Brummer, E.C., Langridge, P., Simon, P., Smith, S. 2017. Plant breeding and genetics. Council for Agricultural Science and Technology Issue Paper. Issue Paper 57.
Characterization of a genomic region under selection in cultivated carrot (Daucus carota subsp. sativus) reveals a candidate domestication gene Reprint Icon - (Peer Reviewed Journal)
Macko-Podgorni, A., Machaj, G., Stelmach, K., Senalik, D.A., Grzebelus, E., Iorizzo, M., Simon, P.W., Grzebelus, D. 2017. Characterization of a genomic region under selection in cultivated carrot (Daucus carota subsp. sativus) reveals a candidate domestication gene. Frontiers in Plant Science. 8:12. https://doi.org/10.3389/fpls.2017.00012.
The carrot genome provides insights into crop origins and a foundation for future crop improvement - ()
Simon, P.W., Iorizzo, M., Ellison, S., Senalik, D.A., Zeng, P., Satapoomin, P., Bowman, M., Iovene, M., Sanseverino, W., Cavagnaro, P., Yildiz, M., Macko-Podgorni, A., Moranska, E., Spooner, D.M. et al. 2016. The carrot genome provides insights into crop origins and a foundation for future crop improvement. Chronica Horticulturae. 56(4):8-13.
Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae) Reprint Icon - (Peer Reviewed Journal)
Arbizu, C.I., Ellison, S.L., Senalik, D., Simon, P.W., Spooner, D.M. 2016. Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae). BMC Evolutionary Biology. 16(1):234. doi: 10.1186/s12862-016-0806-x.
SHORT HYPOCOTYL 1 encodes a SMARCA3-like chromatin remodeling factor regulating elongation Reprint Icon - (Peer Reviewed Journal)
Bo, K., Wang, H., Pan, Y., Behera, T.K., Pandey, S., Wen, C., Wang, Y., Simon, P.W., Li, Y., Chen, J., Weng, Y. 2016. SHORT HYPOCOTYL 1 encodes a SMARCA3-like chromatin remodeling factor regulating elongation. Plant Physiology. 172(2):1273-1292. doi: 10.1104/pp.16.00501.
Patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in the United States - (Peer Reviewed Journal)
Mandel, J.R., Ramsey, A.J., Iorizzo, M., Simon, P.W. 2016. Patterns of gene flow between crop and wild carrot, Daucus carota (Apiaceae) in the United States. PLoS One. 11(9). doi.org/10.1371/journal.pone.0161971.
Nuclear DNA content variation within the genus Daucus (Apiaceae) determined by flow cytometry Reprint Icon - (Peer Reviewed Journal)
Nowicka, A., Sliwinska, E., Grzebelus, D., Baranski, R., Simon, P.W., Nothnagel, T., Grzebelus, E. 2016. Nuclear DNA content variation within the genus Daucus (Apiaceae) determined by flow cytometry. Scientific Horticulture. 209:132-138. doi: 10.1016/j.scienta.2016.06.023.
RNA Expression and Post-Transcriptional Editing Analyses of Cucumber Plastids Reveals Genetic Differences Associated with Chilling Tolerance - (Abstract Only)
Gordon, V.S., Staub, J.E., Willis, D.K., Simon, P.W. 2016. RNA Expression and Post-Transcriptional Editing Analyses of Cucumber Plastids Reveals Genetic Differences Associated with Chilling Tolerance . HortScience. 51(9):S101.(Abstr.).
A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Ellison, S., Senalik, D., Zeng, P., Satapoomin, P., Huang, J., Bowman, M., Iovene, M., Sanseverino, W., Cavagnaro, P., Yildiz, M., Spooner, D.M., Simon, P.W., et al. 2016. A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution. Nature Genetics. 48(6):657-666. doi: 10.1038/ng.3565.
Genotyping-by-sequencing provides insights into the classification of the subspecies of Daucus carota - (Abstract Only)
Arbizu, C., Ellison, S., Senalik, D.A., Simon, P.W., Spooner, D.M. 2016. Genotyping-by-sequencing provides insights into the classification of the subspecies of Daucus carota [abstract]. Botany. Paper No. 348.
A complete plastid phylogeny of Daucus – concordance to nuclear results, and markers necessary for phylogenetic resolution - (Abstract Only)
Spooner, D.M., Ruess, H.M., Senalik, D.A., Simon, P.W. 2016. A complete plastid phylogeny of Daucus – concordance to nuclear results, and markers necessary for phylogenetic resolution [abstract]. Botany. Paper No. 119.
Integrated molecular and morphological studies of the Daucus guttatus complex (Apiaceae) Reprint Icon - (Peer Reviewed Journal)
Arbizu, C.I., Simon, P.W., Martinez-Flores, F., Ruess, H., Crespo, M.B., Spooner, D.M. 2016. Integrated molecular and morphological studies of the Daucus guttatus complex (Apiaceae). Systematic Botany. 41(2):479-492. doi: 10.1600/036364416X691948.
Lectotype designation for seven species names in the Daucus guttatus complex (Apiaceae) from the central and eastern Mediterranean basin Reprint Icon - (Peer Reviewed Journal)
Martinez-Flores, F., Arbizu, C.I., Reitsma, K., Juan, A., Simon, P.W., Spooner, D.M., Crespo, M.B. 2016. Lectotype designation for seven species names in the Daucus guttatus complex (Apiaceae) from the central and eastern Mediterranean basin. Systematic Botany. 41(2):464-478. doi: 10.1600/036364416X691849.
Recent advance in carrot genomics Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Ellison, S., Van Deynze, A., Stoffel, K., Ashrafi, H., Iovene, M., Cavagnaro, P., Cheng, S., Zheng, P., Zheng, Z., Senalik, D., Spooner, D.M., Simon, P.W. 2017. Recent advance in carrot genomics. Acta Horticulturae. 1153:61-68. doi: 10.17660/ActaHortic.2017.1153.10.
The CIOA (Carrot Improvement for Organic Agriculture) project: location, cropping system and genetic background influence carrot performance including top height and flavour Reprint Icon - (Peer Reviewed Journal)
Simon, P.W., Navazio, J.P., Colley, M., McCluskey, C., Zystro, J., Hoagland, L., Roberts, P.A., du Toit, L.J., Waters, T., Silva, E., Colquhoun, J., Nunez, J. 2017. The CIOA (Carrot Improvement for Organic Agriculture) project: location, cropping system and genetic background influence carrot performance including top height and flavour. Acta Horticulturae. 1153:1-8. doi: 10.17660/ActaHortic.2017.1153.1.
Integrated molecular and morphological studies of Daucus Reprint Icon - (Peer Reviewed Journal)
Atbizu, C.I., Ruess, H., Senalik, D., Iorizzo, M., Simon, P.W., Spooner, D.M., Reitsma, K. 2017. Integrated molecular and morphological studies of Daucus. Acta Horticulturae. 1153:265-271. doi: 10.17660/ActaHortic.2017.1153.39.
Morphological characterization of a Daucus L. germplasm collection in Tunisia Reprint Icon - (Peer Reviewed Journal)
Mezghani, N., Bouhila, A., Robbana, C., Rouz, S., Spooner, D.M., Simon, P.W., Ghrabi, Z., Neffati, M., Bouzbida, B., Hannachi, C. 2017. Morphological characterization of a Daucus L. germplasm collection in Tunisia. Acta Horticulturae. 1153:287-291. doi: 10.17660/ActaHortic.2017.1153.42.
The next generation of carotenoid studies in carrot (Daucus carota L.) - (Peer Reviewed Journal)
Ellison, S., Iorrizo, M., Senalik, D., Simon, P.W. 2017. The next generation of carotenoid studies in carrot (Daucus carota L.). Acta Horticulturae. 1153:93-100. doi: 10.17660/ActaHortic.2017.1153.14.
Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects Reprint Icon - (Peer Reviewed Journal)
Kole, C., Muthamilarasan, M., Henry, R., Edwards, D., Sharma, R., Abberton, M., Batley, J., Bentley, A., Blakeney, M., Bryant, J., Simon, P.W., et al. 2015. Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects. Frontiers in Plant Science. 6:563. doi: 10.3389/fpls.2015.00563.
Identification and characterization of terpene synthases potentially involved in the formation of volatile terpenes in carrot (Daucus carota L.) roots Reprint Icon - (Peer Reviewed Journal)
Yahyaa, M., Tholl, D., Cormier, G., Jensen, R., Simon, P.W., Ibdah, M. 2015. Identification and characterization of terpene synthases potentially involved in the formation of volatile terpenes in carrot (Daucus carota L.) roots. Journal of Agricultural and Food Chemistry. 63(19):4870-4878. doi: 10.1021/acs.jafc.5b00546.
Chilling tolerant U.S. processing cucumber (Cucumis sativus L.): three advanced backcross and ten inbred backcross lines - (Peer Reviewed Journal)
Staub, J.E., Gordon, V.S., Simon, P.W., Wehner, T.C. 2015. Chilling tolerant U.S. processing cucumber (Cucumis sativus L.): three advanced backcross and ten inbred backcross lines. HortScience. 50:1252-1254.
Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber - (Abstract Only)
Weng, Y., Bo, K., Yang, L., Simon, P.W., Chen, J. 2015. Fine mapping of short hypocotyl locus in semi-wild Xishuangbanna cucumber [abstract]. Plant and Animal Genome Conference. Paper No. P0932.
Vegetables of temperate climates: Carrot, parsnip and beetroot - ()
Tanumihardjo, S.A., Suri, D., Simon, P., Goldman, I.L. 2016. Vegetables of temperate climates: Carrot, parsnip and beetroot. In: Caballero, B., Finglas, P.M., Toldra, F., editors. Enclyclopedia of Food and Health. Volume 5. Waltham, MA:Academic Press. p. 387-392.
A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation Reprint Icon - (Peer Reviewed Journal)
Cavagnaro, P.F., Iorizzo, M., Yildiz, M., Senalik, D.A., Parsons, J., Ellison, S., Simon, P.W. 2014. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation. Biomed Central (BMC) Genomics. 15:1118.
Integrated molecular and morphological studies of Daucus - (Abstract Only)
Arbizu, C., Ruess, H., Senalik, D., Simon, P., Reitsma, K., Spooner, D. 2015. Integrated molecular and morphological studies of Daucus [abstract]. Plant and Animal Genome Conference. Paper No. P1074.
Morphometrics of Daucus (Apiaceae): A counterpart to a phylogenomic study Reprint Icon - (Peer Reviewed Journal)
Arbizu, C., Reitsma, K.R., Simon, P.W., Spooner, D.M. 2014. Morphometrics of Daucus (Apiaceae): A counterpart to a phylogenomic study. American Journal of Botany. 101(11):2005-2016.
Meloidogyne incognita nematode resistance QTL in carrot Reprint Icon - (Peer Reviewed Journal)
Parsons, J., Matthews, W., Iorizzo, M., Roberts, P., Simon, P. 2015. Meloidogyne incognita nematode resistance QTL in carrot. Molecular Breeding. 35(5):114. doi: 10.1007/s11032-015-0309-2.
Development and validation of new SSR markers from expressed regions in the garlic genome Reprint Icon - (Peer Reviewed Journal)
Ipek, M., Sahin, N., Ipek, A., Cansev, A., Simon, P.W. 2015. Development and validation of new SSR markers from expressed regions in the garlic genome. Scientia Horticulturae. 72(1):41-46.
Phylogenomics of the carrot genus (Daucus, Apiaceae) Reprint Icon - (Peer Reviewed Journal)
Arbizu, C., Ruess, H., Senalik, D., Simon, P.W., Spooner, D.M. 2014. Phylogenomics of the carrot genus (Daucus, Apiaceae). American Journal of Botany. 101(10):1666-1685.
Integrated molecular and morphological studies of Daucus - (Abstract Only)
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2014. Integrated molecular and morphological studies of Daucus [abstract]. Botany. Paper No. 172.
Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker Reprint Icon - (Peer Reviewed Journal)
Macko-Podgorni, A., Iorizzo, M., Smolka, K., Simon, P.W., Grzebelus, D. 2014. Conversion of a diversity arrays technology marker differentiating wild and cultivated carrots to a co-dominant cleaved amplified polymorphic site marker. Acta Biochimica Polonica. 61(1):19-22.
Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall Reprint Icon - (Peer Reviewed Journal)
Saude, C., Simon, P.W., McDonald, M.R. 2014. Incidence and severity of cavity spot of carrot as affected by pigmentation, temperature, and rainfall. Plant Disease. 98(7):929-936.
First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae Reprint Icon - (Peer Reviewed Journal)
Du Toit, L.J., Derie, M.L., Christianson, C.E., Hoagland, L., Simon, P.W. 2014. First report of bacterial blight of carrot in Indiana caused by Xanthomonas hortorum pv. carotae . Plant Disease. 98(5):685.
Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus) Reprint Icon - (Peer Reviewed Journal)
Schmaelzle, S., Gannon, B., Crawford, S., Arscott, S.A., Goltz, S., Palacios-Rojas, N., Pixley, K.V., Simon, P.W., Tanumihardjo, S.A. 2014. Maize genotype and food matrix affect the provitamin A carotenoid bioefficacy from staple and carrot-fortified feeds in Mongolian gerbils (Meriones unguiculatus). Journal of Agricultural and Food Chemistry. 62(1):136-143.
Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences Reprint Icon - (Peer Reviewed Journal)
Simon, P.W. 2014. Progress toward increasing intake of dietary nutrients from vegetables and fruits: The case for a greater role for the horticultural sciences. HortScience. 49(2):112-115.
Mechanisms of decreasing dysploidy in Cucumis - (Abstract Only)
Yang, L., Koo, D., Li, D., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Casacuberta, J., Senalik, D.A., Simon, P.W., Chen, J., Weng, Y. 2014. Mechanisms of decreasing dysploidy in Cucumis [abstract]. Plant and Animal Genome Conference. Paper No. W233.
Testing the utility of matK and ITS DNA regions for discrimination of Allium species - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2014. Testing the utility of matK and ITS DNA regions for discrimination of Allium species. Turkish Journal of Botany. 38(2):203-212.
Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot - (Peer Reviewed Journal)
Ali, A., Mathews, W.C., Cavagnaro, P.F., Iorizzo, M., Roberts, P.A., Simon, P.W. 2014. Inheritance and mapping of Mj-2, a new source of root-knot nematode (Meloidogyne javanica) resistance in carrot. Journal of Heredity. 105(2):288-291.
Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers Reprint Icon - (Peer Reviewed Journal)
Grzebelus, D., Iorizzo, M., Senalik, D.A., Ellison, S., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Nothnagel, T., Allender, C., Simon, P.W., Baranski, R. 2014. Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers . Molecular Breeding. 33(3):625-637.
Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene Reprint Icon - (Peer Reviewed Journal)
Yahyaa, M., Bar, E., Dubey, N.K., Meir, A., Davidovich-Rikanati, J., Hirschberg, J., Ali, R., Tholl, D., Simon, P.W., Tadmor, Y., Lewinsohn, E., Ibdah, M. 2013. Formation of norisoprenoid flavor compounds in carrot (Daucus carota L.) roots: characterization of a cyclic-specific carotenoid cleavage dioxygenase 1 gene. Journal of Agricultural and Food Chemistry. 61(50):12244-12252.
Fruit morphological descriptors as a tool for discrimination of Daucus L. germplasm Reprint Icon - (Peer Reviewed Journal)
Mezghani, N., Zaouali, I., Bel Amri, W., Rouz, S., Simon, P.W., Hannachi, C., Ghrabi, Z., Neffati, M., Bouzbida, B., Spooner, D.M. 2014. Fruit morphological descriptors as a tool for discrimination of Daucus L. germplasm. Genetic Resources and Crop Evolution. 61(2):499-510.
Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis Reprint Icon - (Peer Reviewed Journal)
Yang, L., Koo, D., Li, D., Zhang, T., Jiang, J., Luan, F., Renner, S.S., Henaff, E., Sanseverino, W., Garcia-Mas, J., Senalik, D.A., Simon, P.W., Weng, Y., et al. 2014. Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis. Plant Journal. 77(1):16-30.
Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot - (Peer Reviewed Journal)
Bowman, M.J., Willis, D.K., Simon, P.W. 2014. Transcript abundance of phytoene synthase 1 and phytoene synthase 2 is associated with natural variation of storage root carotenoid pigmentation in carrot. Journal of the American Society for Horticultural Science. 139(1):63-68.
Daucus - ()
DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic Reprint Icon - (Peer Reviewed Journal)
Macko-Podgorni, A., Nowicka, A., Grzebelus, E., Simon, P.W., Grzebelus, D. 2013. DcSto: carrot Stowaway-like elements are abundant, diverse, and polymorphic. Genetica. 141(4-6):255-267.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus - (Abstract Only)
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. 36th International Carrot Conference. Paper. No. P16.
Taxonomy, distribution and germplasm collection needs of Daucus - (Abstract Only)
Spooner, D.M., Simon, P.W. 2013. Taxonomy, distribution and germplasm collection needs of Daucus [abstract]. International Carrot Conference. Paper No. 16.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus - (Abstract Only)
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. International Carrot Conference. Paper No. 17.
Reassessment of practical species identifications of the USDA Daucus carota germplasm collection: Morphological data - (Abstract Only)
Spooner, D.M., Widriechner, M.P., Reitsma, K.R., Palmquist, D.E., Simon, P.W. 2013. Reassessment of practical species identifications of the USDA Daucus carota germplasm collection: Morphological data [abstract]. International Carrot Conference. Paper No. 505.
Reassessment of practical subspecies identifications of the USDA Daucus carota L. germplasm collection: Morphological data Reprint Icon - (Peer Reviewed Journal)
Spooner, D.M., Widrlechner, M.P., Reitsma, K., Palmquist, D.E., Rouz, S., Ghrabi-Gammar, Z., Neffati, M., Bouzbida, B., Ouabbou, H., El Koudrim, M., Simon, P.W. 2014. Reassessment of practical subspecies identifications of the USDA Daucus carota L. germplasm collection: Morphological data. Crop Science. 54(2):706-718.
Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project - (Abstract Only)
Simon, P.W., Navazio, J.P., Colley, M., Hoagland, L., Roberts, P.A., Du Toit, L., Waters, T., Silva, E., Colquhoun, J., Nunez, J., Mccluskey, C. 2013. Location, cropping system, and genetic background influence carrot performance including top height and flavor in the CIOA (Carrot Improvement for Organic Agriculture) Project [abstract]. American Society for Horticultural Science. Paper No. 079.
Expression and mapping of anthocyanin biosynthesis genes in carrot - (Peer Reviewed Journal)
Yildiz, M., Willis, D.K., Cavagnaro, P.F., Iorizzo, M., Abak, K., Simon, P.W. 2013. Expression and mapping of anthocyanin biosynthesis genes in carrot. Theoretical and Applied Genetics. 126(7):1689-1702.
Multiple nuclear ortholog next generation sequencing phylogeny of Daucus - (Abstract Only)
Arbizu, C., Ruess, H.M., Senalik, D.A., Simon, P.W., Spooner, D.M. 2013. Multiple nuclear ortholog next generation sequencing phylogeny of Daucus [abstract]. Botanical Society of America Abstracts. Paper No. 895.
Genetic structure and domestication of carrot (Daucus carota subsp. sativus L.) (Apiaceae) - (Abstract Only)
Iorizzo, M., Senalik, D.A., Ellison, S.L., Grzebelus, D., Cavagnaro, P.F., Allender, C., Brunet, J., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Genetic structure and domestication of carrot (Daucus carota subsp. sativus L.) (Apiaceae) [abstract]. Botanical Society of America Abstracts. Paper No. 654.
Genetic structure and domestication of carrot (Daucus carota subsp. sativus)(Apiaceae) Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Senalik, D.A., Ellison, S., Grzebelus, D., Cavagnaro, P., Allender, C., Brunet, J., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae). American Journal of Botany. 100(5):930-938.
Molecular phylogeny of Daucus (Apiaceae) - (Peer Reviewed Journal)
Spooner, D.M., Srivistav, M., Rojas, P., Simon, P.W. 2013. Molecular phylogeny of Daucus (Apiaceae). Systematic Botany. 38(3):850-857.
Daucus for the flora of North America - ()
Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR - (Peer Reviewed Journal)
Bowman, M.J., Simon, P.W. 2013. Quantification of the relative abundance of plastome to nuclear genome in leaf and root tissues of carrot (Daucus carota L.) using quantitative PCR. Plant Molecular Biology Reporter. 31(4):1040-1047.
Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome Reprint Icon - (Peer Reviewed Journal)
Iorizzo, M., Grzebelus, D., Senalik, D.A., Szklarczyk, M., Spooner, D.M., Simon, P.W. 2012. Against the traffic: The first evidence for mitochondrial DNA transfer into the plastid genome. Mobile Genetic Elements. 2(6):261-266.
Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) - (Abstract Only)
Ellison, S.L., Iorizzo, M., Senalik, D.A., Simon, P.W. 2013. Genome-wide association of the domestication syndrome in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0698.
Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) - (Abstract Only)
Iorizzo, M., Senalik, D.A., Ellison, S.L., Grzebelus, D., Cavagnaro, P., Spooner, D.M., Van Deynze, A., Simon, P.W. 2013. Development of a high-throughput SNP resource to advance genomic, genetic and breeding research in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0762.
Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) - (Abstract Only)
Grzebelus, D., Baranski, R., Iorizzo, M., Senalik, D.A., Ellison, S.L., Cavagnaro, P., Macko-Podgorni, A., Heller-Uszynska, K., Kilian, A., Simon, P.W. 2013. Diversity Arrays Technology (DArT) platform for genotyping and mapping in carrot (Daucus carota L.) [abstract]. Plant and Animal Genome Conference. Paper No. P0697.
Breeding and genomics of vegetable crops for climate-resilience traits - ()
Molecular mapping of vernalization requirement and fertility restoration genes in carrot - (Peer Reviewed Journal)
Alessandro, M.S., Galamarini, C.R., Iorizzo, M., Simon, P.W. 2013. Molecular mapping of vernalization requirement and fertility restoration genes in carrot. Theoretical and Applied Genetics. 126(2):415-423.
De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome - (Peer Reviewed Journal)
Simon, P.W., Iorizzo, M., Senalik, D.A., Szklarczyk, M., Grzebelus, D., Spooner, D.M. 2012. De novo assembly and characterization of the carrot mitochondrial genome using next generation sequencing data from whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome. Biomed Central (BMC) Plant Biology. 12:1-17.
Effect of UV-B light and genotype on antioxidant enhancement of carrot slices - (Abstract Only)
Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci - (Peer Reviewed Journal)
Baransi, R., Maksylewicz-Kaul, A., Nothnagel, T., Cavagnaro, P., Simon, P.W., Grzebelus, D. 2011. Genetic diversity of carrot (Daucus carota L.) cultivars revealed by analysis of SSR loci. Genetic Resources and Crop Evolution. 59(2):163-170.
In silico analysis of 454 data yields the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome - (Abstract Only)
Zalapa, J.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Polashock, J.J., Vorsa, N., Fajardo, D., Harbut, R., Zhu, H., Mccown, B., Zeldin, E. 2012. In silico analysis of 454 data yields the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome [abstract]. Plant and Animal Genome Conference. Paper No. P0047.
De novo assembly of the carrot mitochondrial genome - (Abstract Only)
Iorizzo, M., Simon, P.W., Senalik, D.A., Szklarczyk, M., Grzeblus, D. 2012. De novo assembly of the carrot mitochondrial genome [abstract]. Plant and Animal Genome Conference. Paper No. P0040.
Progress towards the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome - (Abstract Only)
Zalapa, J.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Polashock, J.J., Vorsa, N., Diego, F., Harbut, R., Zhu, H. 2011. Progress towards the complete American cranberry (Vaccinium macrocarpon Ait.) plastid genome [abstract]. Plant Sciences Symposium.
Using next generation sequencing approaches for the isolation of simple sequence repeats (SSF) in the plant sciences - (Peer Reviewed Journal)
Zalapa, J.E., Cuevas, H.E., Steffan, S.A., Simon, P.W., Senalik, D.A., Zhu, H., Mccown, B., Zeldin, E., Harbut, R. 2012. Using next generation sequencing approaches for the isolation of simple sequence repeats (SSR) in the plant sciences. American Journal of Botany. 99(2):193-208.
Daucus - ()
Grzebelus, D., Baranski, R., Spalik, K., Allender, C., Simon, P.W. 2011. Daucus. In: Kole, C., editor, Wild Crop Relatives: Genomic and Breeding Resources. New York, NY:Springer. p. 91-113.
Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.) - (Peer Reviewed Journal)
Zalapa, J.E., Simon, P.W., Hummer, K.E., Bassil, N.V., Senalik, D.A., Zhu, H., Mccown, B.H., Zeldin, E., Speers, J., Hyman, J. 2012. Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.). Theoretical and Applied Genetics. 124(1):87-96.
Allocation of experimental resources to minimize the variance of genotype mean chip color and tuber composition - (Peer Reviewed Journal)
Mccann, L.C., Bethke, P.C., Casler, M.D., Simon, P.W. 2011. Allocation of experimental resources to minimize the variance of genotype mean chip color and tuber composition. Crop Science. 52(4):1475-1481.
De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity - (Peer Reviewed Journal)
Iorizzo, M., Senalik, D.A., Grzebelus, D., Bowman, M., Cavagnaro, P.F., Matvienko, M., Ashrafi, H., Van Deynze, A., Simon, P.W. 2011. De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. Biomed Central (BMC) Genomics. 12:389.
Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae - (Peer Reviewed Journal)
Cavagnaro, P.F., Chung, S., Manin, S., Yildiz, M., Ali, A., Alessandro, M.S., Iorizzo, M., Senalik, D.A., Simon, P.W. 2011. Microsatellite isolation and marker development in carrot - genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae. Biomed Central (BMC) Genomics. 12:386.
Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp - (Peer Reviewed Journal)
Bo, K., Song, H., Shen, J., Qian, C., Staub, J.E., Simon, P.W., Lou, Q., Chen, J. 2011. Inheritance and mapping of the ore gene controlling the quantity of ß-carotene in cucumber (Cucumis sativus L.) endocarp. Molecular Breeding. 30(1):335-344.
USDA, ARS EOM 402-10 high B-carotene cucumber - ()
Staub, J.E., Simon, P.W., Cuevas, H.E. 2011. USDA, ARS EOM 402-10 high B-carotene cucumber. HortScience. 46:1426-1427.
Comparative FISH mapping of Daucus species (Apiaceae family) - (Peer Reviewed Journal)
Iovene, M., Cavagnaro, P.F., Simon, P.W., Senalik, D.A., Buell, C.R., Jiang, J. 2011. Comparative FISH mapping of Daucus species (Apiaceae family). Chromosome Research. 19:493-506.
Molecular markers: are they really useful to detect genetic variability in local garlic collections? - (Peer Reviewed Journal)
Garcia Lampasona, S., Burba, J.L., Simon, P.W. 2010. Molecular markers: are they really useful to detect genetic variability in local garlic collections? The Americas Journal of Plant Science and Biotechnology. 4(SI1):104-112.
The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae - (Abstract Only)
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philge, P., Senapathy, P. 2011. The Development of RoBuST: An integrated genomics resource for the root and bulb crop families Apiaceae and Alliaceae [abstract]. Plant and Animal Genome Conference. P. 811.
Development of EST based markers for exploiting the carrot genome - (Abstract Only)
Iorizzo, M., Bowman, M., Simon, P.W., Cavagnaro, P., Senalik, D.A., Carputo, D., Van Deynze, A. 2011. Development of EST based markers for exploiting the carrot genome [abstract]. Plant and Animal Genome Conference. p. 175.
Genomics and genetic improvement of carrot pigments - (Abstract Only)
Simon, P.W. 2011. Genomics and genetic improvement of carrot pigments [abstract]. Plant and Animal Genome Conference. W409.
Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.) - (Peer Reviewed Journal)
Cavagnari, P.F., Weng, Y., Senalik, D.A., Yang, L., Simon, P.W., Harkins, T.T., Kodira, C.D., Huang, S. 2010. Genome-wide Characterization of Simple Sequence Repeats in Cucumber (Cucumis Sativus L.). Biomed Central (BMC) Genomics. Available: http://www.biomedcentral.com/1471-2164/11/569.
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.) - (Peer Reviewed Journal)
Cavagnaro, P.F., Weng, Y., Senalik, D.A., Simon, P.W., Harkins, T.T., Huang, S. 2010. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). Biomed Central (BMC) Genomics. 11:569-588.
RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae - (Peer Reviewed Journal)
Bhasi, A., Simon, P.W., Senalik, D.A., Kumar, B., Manikandan, V., Philip, P., Senapathy, P. 2010. RoBuST: An Integrated Resource of Genomics Information for Plants in the Root and Bulb Crop Families Apiaceae and Alliaceae. Biomed Central (BMC) Plant Biology. 10:161.
New carrot and garlic germplasm to advance breeding and understand crop origins - (Abstract Only)
Simon, P.W. 2010. New carrot and garlic germplasm to advance breeding and understand crop origins [abstract]. American Society of Horticulture Science Meeting. p. 11.
Extensive Variation in Fried Chip Color and Tuber Composition in Cold-Stored Tubers of Wild Potato (Solanum) Germplasm - (Peer Reviewed Journal)
Mccann, L.C., Bethke, P.C., Simon, P.W. 2010. Extensive Variation in Fried Chip Color and Tuber Composition in Cold-Stored Tubers of Wild Potato (Solanum) Germplasm. Journal of Agriculture and Food Chemistry. 58(4):2368-2376.
Quantification of the Ratio of Plastid to Chromosomal Genome in Leaf and Root Tissue of Carrot (Daucus Carota) Using Real Time Quantitative PCR - (Abstract Only)
Bowman, M.J., Willis, D.K., Simon, P.W. 2010. Quantification of the Ratio of Plastid to Chromosomal Genome in Leaf and Root Tissue of Carrot (Daucus Carota) Using Real Time Quantitative PCR [abstract]. Plant and Animal Genome Conference. p. 114.
Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis - (Abstract Only)
Cavagnaro, P., Weng, Y., Senalik, D.A., Harkins, T.T., Kodira, C.D., Simon, P.W., Huang, S. 2010. Genetic Variation Between Two Cucumber Genotypes Inferred from Genome-wide Microsatellite Polymorphism Analysis [abstract]. Plant and Animal Genome Conference. p. 135.
Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers - (Abstract Only)
Acharya, L., Simon, P.W. 2010. Diversity of garlic (Allium sativum L.) using SSR, EST and AFLP markers [abstract]. Plant and Animal Genome Conference. p. 124.
DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome - (Abstract Only)
Podgorni, M., Mschichowska, A., Grzebelus, E., Grzebelus, D., Simon, P.W. 2010. DcSto, stowaway-like miniature inverted-repeat transposable elements (MITEs), are abundant and polymorphic in the carrot genome [abstract]. Plant and Animal Genome Conference. p. 205.
Developing genomic resources for the apiaceae - (Abstract Only)
Bowman, M., Matvienko, M., Van Deynze, A., Simon, P.W., Senalik, D.A. 2010. Developing genomic resources for the apiaceae [abstract]. Plant and Animal Genome Conference. P. 037.
New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae - (Abstract Only)
Cavagnaro, P.F., Chung, S., Manin, S., Atkins, A.E., Simon, P.W. 2010. New carrot microsatellites – linkage mapping, diversity analysis and transferability to other apiaceae [abstract]. Plant and Animal Genome Conference. P. 038.
Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.) - (Peer Reviewed Journal)
Cuevas, H.E., Staub, J.E., Simon, P.W. 2010. Inheritance of the Quantity of ß-carotene and Fruit Maturity of Melon (Cucumis Melon L.). Euphytica. 171(3):301-311.
Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit - (Peer Reviewed Journal)
Cuevas, H.E., Song, H., Staub, J.E., Simon, P.W. 2010. Inheritance of Beta-Carotene-Associated Flesh Color in Cucumber (Cucumis Sativus L.) Fruit. Euphytica. 171(3):301-311.
Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008) - (Peer Reviewed Journal)
Ortiz, R., Simon, P.W., Jansky, S.H., Stelly, D. 2009. Ploidy Manipulation of the Gametophyte, Endosperm, and Sporophyte in Nature and for Crop Improvement – A Tribute to Prof. Stanley J. Peloquin (1921-2008). Annals Of Botany. 104(5):795-807.
Major QTL for Carrot Color are Associated with Carotenoid Biosynthetic Genes and Interact Epistatically in a Domesticated x Wild Carrot Cross - (Peer Reviewed Journal)
Just, B.J., Santos, C.F., Yandell, B.S., Simon, P.W. 2009. Major QTL for Carrot Color are Associated with Carotenoid Biosynthetic Genes and Interact Epistatically in a Domesticated x Wild Carrot Cross. Theoretical and Applied Genetics. 119(7):1155-1169.
Educating the Next Generation of Plant Breeders: The Need and the Challenge - (Peer Reviewed Journal)
Baenziger, P.S., Simon, P.W., Wehner, T.C. 2009. Educating the Next Generation of Plant Breeders: The Need and the Challenge. Society for Advancement of Breeding Researches in Asia and Oceania. 14:1-10.
Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding - (Peer Reviewed Journal)
Tanumihardjo, S., Horvitz, M., Dosti, M.P., Simon, P.W. 2009. Serum a- and b-carotene concentrations qualitatively respond to sustained carrot feeding. Experimental Biology and Medicine. 234:1280-1286.
Applying Molecular Markers in Coriander Populations with Diverse Geographical Origins - (Abstract Only)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2009. Applying Molecular Markers in Coriander Populations with Diverse Geographical Origins. In: Proceedings of the XIII National Congress of Mexican Society of Horticultural Sciences, August 17-21, 2009, Torreon, Coahuila, Mexico. p. 2.
Genome Wide Characterization of Simple Sequence Repeats in Cucumber - (Abstract Only)
Weng, Y., Cavagnaro, P., Senalik, D.A., Harkins, T., Simon, P.W. 2009. Genome Wide Characterization of Simple Sequence Repeats in Cucumber [abstract]. International Symposium on Cucurbits Proceedings. p. 80.
A Consensus Linkage Map that Identifies Genomic Regions Controlling Beta-Carotene Quantity and Fruit Maturity in Melon (Cucumis Melo L.) - (Peer Reviewed Journal)
Cuevas, H.E., Staub, J.E., Simon, P.W., Zalapa, J.E. 2010. A Consensus Linkage Map that Identifies Genomic Regions Controlling Beta-Carotene Quantity and Fruit Maturity in Melon (Cucumis Melo L.). Theoretical and Applied Genetics. 119:741-756.
Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors - (Peer Reviewed Journal)
Sun, T., Simon, P.W., Tanumihardjo, S.A. 2009. Antioxidants and Antioxidant Capacity of Biofortified Carrots (Daucus Carota, L.) of Various Colors. Journal of Agricultural and Food Chemistry. 57(10):4142-4147.
Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences - (Peer Reviewed Journal)
Simon, P.W., Cavagnaro, P.F., Chung, S., Szklarczyk, M., Grzebelus, D., Senalik, D.A., Atkins, A.E. 2009. Characterization of a deep-coverage carrot (Daucus carota L.) BAC library and initial analysis of BAC-end sequences. Molecular Genetics and Genomics. 281(3):273-288.
SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries - (Peer Reviewed Journal)
Simon, P.W., Cavagnaro, P.F., Senalik, D.A. 2009. SplinkBES - A Splinkerette-Based Method for Generating Long End Sequences From Large Insert DNA Libraries. Biotechniques. 47:681-690.
Bitter Gourd: Botany, Horticulture, Breeding - ()
Behera, T.K., Behera, S., Bharathi, L.K., John, J., Simon, P.W., Staub, J.E. 2010. Bitter Gourd: Botany, Horticulture, Breeding. Plant Breeding Reviews (J. Janick ed.) 37:101-141. Wiley-VCH, Koln, Germany.
The Concept of Horizontal Linkage and Its Application to Genetics and Breeding - ()
Peloquin, S.J., Simon, P.W., Jansky, S.H. 2009. The Concept of Horizontal Linkage and Its Application to Genetics and Breeding. In: Mohan, R.H., editor. Research Advances in Heredity. 1st edition. Kerala, India:Global Research Network. p. 1-7.
Bioavailability of Anthocyanins from Purple Carrot Juice: Effects of Acylation and Plant Matrix - (Peer Reviewed Journal)
Charron, C.S., Kurilich, A.C., Clevidence, B.A., Simon, P.W., Harrison, D.J., Britz, S.J., Baer, D.J., Novotny Dura, J. 2009. Bioavailability of Anthocyanins from Purple Carrot Juice: Effects of Acylation and Plant Matrix. Journal of Agricultural and Food Chemistry. 57(4):1226-1230.
Progress in the Development of Nutrient-Rich Nematode Resistant Carrots - (Abstract Only)
Simon, P.W., Roberts, P.A., Nunez, J. 2009. Progress in the Development of Nutrient-Rich Nematode Resistant Carrots [abstract]. 33rd International Carrot Conference. Paper No. BG-101.
Genetic Influences on the Seed Yielding Ability of Carrot Hybrids - (Abstract Only)
Simon, P.W., Kane, R.T. 2009. Genetic Influences on the Seed Yielding Ability of Carrot Hybrids [abstract]. 33rd International Carrot Conference. Paper No. BG-102.
Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization - (Abstract Only)
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development of 304 new microsatellite markers for carrot. Analysis of their potential for linkage mapping, assessment of genetic diversity and cross-taxa utilization [abstract]. 33rd International Carrot Conference. Paper No. BG-103.
Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR - (Abstract Only)
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Understanding the molecular mechanism of carotenoid accumulation in carrot (Daucus carota) using real time quantitative PCR [abstract]. 33rd International Carrot Conference. Paper No. BG-104.
Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR - (Abstract Only)
Simon, P.W., Bowman, M.J., Willis, D.K. 2009. Expression Analysis of Carotenoid Biosynthesis Genes in Carrot (Daucus Carota) Using Real Time Quantitative PCR. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 717.
Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae - (Abstract Only)
Simon, P.W., Cavagnaro, P.F., Chung, S., Ali, A., Yildiz, M., Alesandro, M.S. 2009. Development and Characterization of Novel SSR Markers in Carrot (Daucus Carota L.) and Their Application for Mapping and Diversity Analysis in Apiaceae. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 132.
Association Between Pachytene Chromosomes and Linkage Groups in Carrot - (Abstract Only)
Simon, P.W., Iovene, M., Cavagnaro, P.F., Jiang, J. 2009. Association Between Pachytene Chromosomes and Linkage Groups in Carrot. Plant and Animal Genome Conference [abstract]. Plant and Animal Genome Conference. p. 201.
Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato - (Peer Reviewed Journal)
Iovene, M., Wielgus, S.M., Simon, P.W., Buell, C.R., Jiang, J. 2008. Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics. 180(3):1307-1317.
Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils - (Peer Reviewed Journal)
Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2008. Biofortified Carrot Intake Enhances Liver Antioxidant Capacity and Vitamin A Status in Mongolian Gerbils. Journal of Nutrition. 138(9):1692-1698.
DIVERSITY OF DcMaster-LIKE ELEMENTS OF THE PIF/Harbinger SUPERFAMILY IN THE CARROT GENOME - (Peer Reviewed Journal)
Grzebelus, D., Simon, P.W. 2008. Diversity of DcMaster-like elements of the PIF/Harbinger superfamily in the carrot genome. Genetica. Available: http://www.ncbi.nlm.nih.gov/pubmed/18535910.
Major Cytogenetic Landmarks and Karyotype analysis in Carrot and Other Apiaceace - (Peer Reviewed Journal)
Iovene, M., Grzebelus, E., Carputo, D., Jiang, J., Simon, P.W. 2008. Major Cytogenetic Landmarks and Karyotype analysis in Carrot and Other Apiaceace. American Journal of Botany. 95:793-804.
Mapping of Genetic Loci that Regulate Accumulation of Beta-Carotene in Fruit of U.S. Western Shipping Melon (Cucumis Melo L.) and Their Association With Putative Carotenoid Biosynthesis Genes - (Peer Reviewed Journal)
Cuevas, H.E., Staub, J.E., Simon, P.W., McCreight, J.D., Zalapa, J.E. 2008. Mapping of Genetic Loci that Regulate Accumulation of Beta-Carotene in Fruit of U.S. Western Shipping Melon (Cucumis Melo L.) and Their Association With Putative Carotenoid Biosynthesis Genes. Theoretical and Applied Genetics 117:1345-1359.
Major Cytogenetic Landmarks and Karyotype Analysis in Carrot (Daucus carota L.) and Other Apiaceace - (Abstract Only)
Iovene, M., Grzebelus, E., Carputo, D., Jiang, J., Simon, P.W. 2008. Major Cytogenetic Landmarks and Karyotype Analysis in Carrot (Daucus carota L.) and Other Apiaceace [abstract]. 2008 Plant and Animal Genome Meeting. p. 201.
Construction and characterization of a deep-coverage carrot (Daucus carota L.) BAC library - (Abstract Only)
Cavagnaro, P.F., Chung, S., Simon, P.W. 2008. Construction and characterization of a deep-coverage carrot (Daucus carota L.) BAC library [abstract]. 2008 Plant and Animal Genome Meeting. p. 56.
Plant Breeding for Human Nutritional Quality - (Peer Reviewed Journal)
Simon, P.W., Pollak, L.M., Clevidence, B.A., Holden, J.M., Haytowitz, D.B. 2009. Plant Breeding for Human Nutritional Quality. Plant Breeding Reviews. 31:325-415.
Carrot - ()
Simon, P.W., Freeman, R.E., Vieira, J.V., Boiteux, L.S., Briard, M., Nothnagel, T., Michalik, B., Kwon, Y. 2008. Carrot. In: Prohens, J., Nuez, F. editors. Handbook of Plant Breeding. Volume 2. New York, NY: Springer. p. 327-357.
Bitter Gourd; A vegetable to Improve Human Health - (Peer Reviewed Journal)
Behera, T., Simon, P.W., Staub, J.E. 2007. Bitter Gourd; A vegetable to Improve Human Health. Medicinal and Aromatic Plants: Production, Business and Applications. 1(2):224-227.
Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2008. Genetic Characterization of Allium Tuncelianum: An Endemic Edible Allium Species With Garlic Odor. Scientia Horticultureae. 115(4):409-415.
Role of Color and Pigments in Breeding, Genetics, and Nutritional Improvement of Carrots - ()
Simon, P.W., Tanumihardjo, S.A., Clevidence, B.A., Novotny Dura, J. 2008. Role of Color and Pigments in Breeding, Genetics, and Nutritional Improvement of Carrots. In: Culver, C.A., Wrolstad, R.E., editors. Color Quality of Fresh and Processed Foods. Washington, D.C.: Oxford University Press. p. 151-165.
A Chromosome-Specific Estimate of Transmission of Heterozygosity by 2n Gametes in Potato - (Peer Reviewed Journal)
Peloquin, S.J., Boiteux, L.S., Simon, P.W., Jansky, S.H. 2008. A chromosome-specific estimate of transmission of heterozygosity by 2n gametes in potato. Journal of Heredity. 99(2):177-181.
Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2008. Molecular Characterization of Kastamonu Garlic: An Economically Important Garlic Clone in Turkey. Scientia Horticultureae. 115(2):203-208.
Characterization of an Unusual Cytoplasmic Chimera Detected in Bolting Garlic (Allium sativum L.) Clones - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Senalik, D.A., Simon, P.W. 2007. Characterization of an Unusual Cytoplasmic Chimera Detected in Bolting Garlic (Allium sativum L.) Clones. Journal of the American Society for Horticultural Science. 132:664-669.
Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas - (Peer Reviewed Journal)
Camadro, E.L., Cauhepe, M.A., Simon, P.W. 2008. Compatibility Relations Between the Edible Carrot Daucus Carota and D. Pusillus, a Related Wild Species from the Argentinian Pampas. Euphytica. 159(1-2):103-109.
ß-Carotene from Red Carrot Maintains Vitamin A Status, but Lycopene Bioavailability Is Lower Relative to Tomato Paste in Mongolian Gerbils - (Peer Reviewed Journal)
Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2007. ß-Carotene from Red Carrot Maintains Vitamin A Status, but Lycopene Bioavailability Is Lower Relative to Tomato Paste in Mongolian Gerbils. Journal of Nutrition. 137:1395-1400.
Carotenoid pathway genes and accumulation of B-carotene in Cucumis melo L - (Abstract Only)
Cuevas, H.E., Staub, J.E., Simon, P.W., McCreight, J.D., Zalapa, J.E. 2007. Carotenoid pathway genes and accumulation of B-carotene in Cucumis melo L [abstract]. American Society for Horticultural Science 104th Annual Conference. 42(4):1013-1014.
Assessing phenotypic, biochemical, and molecular diversity in coriander (Coriandrum sativum L.) germplasm - (Peer Reviewed Journal)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Boylston, T.D., Isbell, T., Bailey, T.B., Gardner, C.A., Wilson, L.A. 2008. Assessing phenotypic, biochemical, and molecular diversity in coriander (Coriandrum sativum L.) germplasm. Genetic Resources and Crop Evolution. 55:247-275.
SCREENING CORIANDER GENE POOL FOR SPECIAL USES - (Proceedings)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2007. Screening coriander gene pool for special uses. In: Janick, J. and Whipkey, A., editors. Issues in New Crops and New Uses. 2006 AAIC Annual Meeting and Sixth New Crops Symposium, October 14-18, 2006, San Diego, California. p. 280-283.
Effect of cooking on garlic (Allium sativum) antiplatelet activity and thiosulfinates content - (Peer Reviewed Journal)
Cavagnaro, P.F., Camargo, A., Galmarini, C.R., Simon, P.W. 2007. Effect of cooking on garlic (Allium sativum) antiplatelet activity and thiosulfinates content. Journal of Agricultural and Food Chemistry. 55:1280-1288.
Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping - (Peer Reviewed Journal)
Just, B.J., Santos, C., Boiteux, L.S., Oloizia, B.B., Simon, P.W. 2006. Carotenoid biosynthesis structural genes in carrot (Daucus carota): isolation, sequence-characterization, single nucleotide polymorphism (SNP) markers and genome mapping. Journal of Theoretical and Applied Genetics. 114:693-704.
Bioavailability of beta-carotene (betaC) from purple carrots is the same as typical orange carrots while high-betaC carrots increase betaC stores in Mongolian gerbils (Meriones unguiculatus) - (Peer Reviewed Journal)
Porter Dosti, M., Mills, J.P., Simon, P.W., Tanumihardjo, S.A. 2006. Bioavailability of beta-carotene (betaC) from purple carrots is the same as typical orange carrots while high-betaC carrots increase betaC stores in Mongolian gerbils (Meriones unguiculatus). British Journal of Nutrition. 96(2):260-269.
SCREENING THE GENE POOL FOR SPECIAL USES IN CORIANDER - (Abstract Only)
Lopez, P.A., Widrlechner, M.P., Simon, P.W., Rai, S., Bailey, T.B., Gardner, C.A. 2006. Screening the gene pool for special uses in coriander [abstract]. Association for the Advancement of Industrial Crops Conference. p. 68
The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome - (Peer Reviewed Journal)
Grzebelus, D., Jagosz, B., Simon, P.W. 2007. The DcMaster Transposon Display maps polymorphic insertion sites in the carrot (Daucus carota L.) genome. Gene. 390:67-74.
SEQUENCE HOMOLOGY OF POLYMORPHIC AFLP MARKERS IN GARLIC (ALLIUM SATIVUM L.) - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2006. Sequence homology of polymorphic AFLP markers in garlic (Allium sativum l.). Genome. 49:1246-1255.
Geographical Distribution of Wild Daucus Species in the Natural Grasslands of the Argentinian Pampas - (Peer Reviewed Journal)
Camadro, E.L., Cauhepe, M.A., Simon, P.W. 2007. Geographical Distribution of Wild Daucus Species in the Natural Grasslands of the Argentinian Pampas . Genetic Resources and Crop Evolution. 54(4):855-863.
ASSOCIATION OF REVERSIBLE INACTIVATION OF MAIZE TRANSPOSABLE ELEMENT, DS, WITH TISSUE-SPECIFIC PROCESSING OF THE 35S:TPASE TRANSCRIPT IN CARROT (DAUCUS CAROTA L.) - (Abstract Only)
Ipek, A., Ipek, M., Simon, P.W. 2006. Association of reversible inactivation of maize transposable element, Ds, with tissue-specific processing of the 35s:TPase transcript in carrot (Daucus carota l.)[abstract]. Journal of Horticultural Science and Biotechnology. 81:819-826.
Carrot - ()
Simon, P.W., Goldman, I.L. 2007. Carrot. In: Singh, R.J. Genetic Resources, Chromosome Engineering, and Crop Improvement Series, Volume 3. Boca Raton: CRC Press. p. 497-517.
HERITABILITIES AND MINIMUM GENE NUMBER ESTIMATES OF CARROT CAROTENOIDS - (Peer Reviewed Journal)
Santos, C., Simon, P.W. 2006. Heritabilities and minimum gene number estimates of carrot carotenoids. Euphytica. 151:79-86.
MASTER - A NOVEL FAMILY OF PIF/HARBINGER-LIKE TRANSPOSABLE ELEMENTS IDENTIFIED IN CARROT (DAUCUS CAROTA L.) - (Peer Reviewed Journal)
Grzebelus, D., Yau, Y., Simon, P.W. 2006. Master - a novel family of PIF/Harbinger-like transposable elements identified in carrot (Daucus carota L.). Molecular Genetics and Genomics. 275:450-459.
SINGLE SEED RAMAN MEASUREMENTS ALLOW TAXONOMICAL DISCRIMINATION OF APIACEAE ACCESSIONS COLLECTED IN GENE BANKS - (Peer Reviewed Journal)
Baranski, R., Baranska, M., Schulz, H., Simon, P.W., Nothnagel, T. 2006. Single seed Raman measurements allow taxonomical discrimination of Apiaceae accessions collected in gene banks. Biopolymers. 81:497-505.
Sequence Tagged Microsatelite Sites for Carrot (Daucus Carota L.) - (Peer Reviewed Journal)
Hyman, J.R., Simon, P.W. 2005. Sequence Tagged Microsatelite Sites for Carrot (Daucus Carota L.). Molecular Breeding. 16:1-10.
GENETIC TRANSFORMATION OF AN AC/DS - BASED TRANSPOSON TAGGING SYSTEM IN CARROT (DAUCUS CAROTA) - (Peer Reviewed Journal)
Ipek, A., Masson, P., Simon, P.W. 2006. Genetic transformation of an Ac/Ds - based transposon tagging system in carrot (Daucus carota). European Journal of Horticultural Science. 71:245-251.
CHARACTERIZATION OF ANTHOCYANINS FROM DIVERSE GERMPLASM OF PURPLE CARROT - (Abstract Only)
Silva, E., Simon, P.W. 2003. Characterization of anthocyanins from diverse germplasm of purple carrot [abstract]. HortScience. 38:674.
PLASMA AND URINE RESPONSES ARE LOWER FOR ACYLATED VS NONACYLATED ANTHOCYANINS FROM RAW AND COOKED PURPLE CARROT. - (Peer Reviewed Journal)
Kurilich, A.C., Clevidence, B.A., Britz, S.J., Simon, P.W., Novotny Dura, J. 2005. Plasma and urine responses are lower for acylated vs nonacylated anthocyanins from raw and cooked purple carrot. Journal of Agricultural and Food Chemistry. 53:6537-6542.
Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products - ()
Silva, E.M., Simon, P.W. 2006. Genetic, Physiological, and Environmental Factors Affecting Acrylamide Concentration in Fried Potato Products. In: Friedman, M., Mottram, D., editors. Advances in Experimental Medicine and Biology. New York, NY:Springer. p. 371-386.
VEGETABLES AND VITAMINS, PLANTS AND PEOPLE - (Peer Reviewed Journal)
Simon, P.W. 2005. Vegetables and vitamins, plants and people. Folia Horticulturae. 15:3-12.
PATH ANALYSIS SUGGESTS PHYTOENE ACCUMULATION AS THE KEY STEP LIMITING THE CAROTENOID PATHWAY IN ROOTS OF WHITE CARROT - (Peer Reviewed Journal)
Santos, C.A., Senalik, D.A., Simon, P.W. 2005. Path analysis suggests phytoene accumulation as the key step limiting the carotenoid pathway in roots of white carrot. Genetics and Molecular Biology. 28:287-293.
CAROTENOID PROFILES AND CONSUMER SENSORY EVALUATION OF SPECIALTY CARROTS - (Peer Reviewed Journal)
Surles, R., Weng, N., Simon, P.W., Tanumihardjo, S. 2004. Carotenoid profiles and consumer sensory evaluation of specialty carrots. Journal of Agriculture and Food Chemistry. 52:3417-3421.
MOLECULAR TAGGING AND SELECTION FOR SUGAR-TYPE IN CARROT ROOTS USING CO-DOMINANT, PCR-BASED MARKERS - (Peer Reviewed Journal)
Yau, Y.Y., Santos, K., Simon, P.W. 2005. Molecular tagging and selection for sugar-type in carrot roots using co-dominant, PCR-based markers. Molecular Breeding. 16:1-10
MAPPING OF MAJOR CARROT COLOR GENES AN EX EXPRESSION OF CAROTENOID BIOSYNTHETIC GENES - (Abstract Only)
Just, B., Simon, P.W. 2004. Mapping of major carrot color genes an ex expression of carotenoid biosynthetic genes [abstract]. Hortscience. 39:870.
DEMONSTRATION OF LINKAGE AND DEVELOPMENT OF THE FIRST LOW-DENSITY GENETIC MAP OF GARLIC BASED ON AFLPTM MARKERS - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Almquist, S.G., Simon, P.W. 2005. Demonstration of linkage and development of the first low-density genetic map of garlic based on aflptm markers. Theoretical and Applied Genetics. 110:228-236.
REALIZING VALUE FROM CENTRAL ASIAN ALLIUM GERMPLASM COLLECTIONS - (Peer Reviewed Journal)
Simon, P.W. 2005. Realizing value from Central Asian Allium germplasm collections. HortScience. 40:309-310.
LUTEIN AND BETA-CAROTENE ARE BIOAVAILABLE IN HUMANS FROM LUTEIN-CONTAINING YELLOW CARROTS - (Peer Reviewed Journal)
Molldrem, K., Li, J., Simon, P.W., Tanumijardjo, S. 2004. Lutein and beta-carotene are bioavailable in humans from lutein-containing yellow carrots. American Journal of Clinical Nutrition. 80:131-136.
EMPLOYMENT OF FLANKING CODOMINANT STS MARKERS TO ESTIMATE ALLELIC SUBSTITUTION EFFECTS OF A NEMATODE RESISTANCE LOCUS IN CARROT - (Peer Reviewed Journal)
Boiteux, L.S., Hyman, J.R., Bach, I.C., Fonseca, M.N., Matthews, W.C., Roberts, P.A., Simon, P.W. 2004. Employment of flanking codominant STS markers to estimate allelic substitution effects of a nematode resistance locus in carrot. Euphytica. 136:37-44.
MERGING CARROT LINKAGE GROUPS BASED ON CONSERVED DOMINANT AFLP MARKERS IN F2 POPULATIONS - (Peer Reviewed Journal)
Santos, C.A., Simon, P.W. 2004. Merging carrot linkage groups based on conserved dominant AFLP markers in F2 populations. Journal of the American Society for Horticultural Science. 129:211-217.
ENVIRONMENTAL AND GENETIC EFFECTS ON GARLIC GROWTH, FLOWERING, AND BULB CHARACTERS - (Abstract Only)
Simon, P.W., Hannan, R.M., Jenderek, M.M., Voss, R.E. 2003. Environmental and genetic effects on garlic growth, flowering, and bulb characters [abstract]. Hortscience. 38:783.
RELATIVE BIOAVAILABILITY OF LYCOPENE FROM LYCOPENE "RED" CARROTS COMPARED TO TOMATO - (Peer Reviewed Journal)
Horvitz, M.A., Simon, P.W., Tanumihardjo, S.A. 2004. Relative bioavailability of lycopene from lycopene "red" carrots compared to tomato. American Journal of Clinical Nutrition.
SEQUENCING OF SPECIFIC AFLP AMPLICONS REVEALS HIGHLY CONSERVED DNA SEQUENCES MAPPING TO THE SAME LINKAGE GROUPS IN TWO UNRELATED F2 POPULATIONS OF CARROT - (Peer Reviewed Journal)
Santos, C.A., Simon, P.W. 2003. Sequencing of specific AFLP amplicons reveals highly conserved DNA sequences mapping to the same linkage groups in two unrelated F2 populations of carrot. Genetics and Molecular Biology. 25:195-201.
A 2.5-KB INSERT ELIMINATES ACID SOLUBLE INVERTASE ISOZYME II TRANSCRIPT IN CARROT (DAUCUS CAROTA L.) ROOTS, CAUSING HIGH SUCROSE ACCUMULATION - (Peer Reviewed Journal)
Yau, Y., Simon, P.W. 2003. A 2.5-kb insert eliminates acid soluble invertase isozyme II transcript in carrot (Daucus carota L.) roots, causing high sucrose accumulation. Plant Molecular Biology. 53:151–162.
A CAROTENOID BIOSYNTHESIS FUNCTION MAP IN CARROT - (Abstract Only)
Just, B., Santos, C., Simon, P.W. 2003. A carotenoid biosynthesis function map in carrot [abstract]. HortScience. 38:717.
DEVELOPMENT OF CO-DOMINANT MARKERS LINKED TO THE MJ-L LOCUS IN CARROT (DAUCUS CAROTA L. SSP. SATIVUS) - (Abstract Only)
Hyman, J., Simon, P.W., Burmeister, A. 2003. Development of co-dominant markers linked to the Mj-l locus in carrot (Daucus carota L. ssp. sativus)[abstract]. HortScience. 38:717.
MOLECULAR DATA SUGGEST MULTIPLE MEMBERS COMPRISING THE ALLIINASE GENE FAMILY IN GARLIC - (Abstract Only)
Cavagnaro, P., Masuelli, R., Simon, P.W. 2003. Molecular data suggest multiple members comprising the alliinase gene family in garlic [abstract]. HortScience. 38:804-805.
NUTRITIONAL QUALITY - ()
Just, B., Simon, P.W. 2004. Nutritional quality. Book Chapter.
FLOWERING, SEED PRODUCTION AND THE GENESIS OF GARLIC BREEDING - (Peer Reviewed Journal)
Simon, P.W., Jenderek, M.M. 2003. Flowering, seed production and the genesis of garlic breeding. Plant Breeding. 32:211-244.
QTL ANALYSES REVEAL CLUSTERED LOCI FOR ACCUMULATION OF MAJOR PROVITAMIN A CAROTENES AND LYCOPENE IN CARROT ROOTS - (Peer Reviewed Journal)
Santos, C.A., Simon, P.W. 2002. QTL analyses reveal clustered loci for accumulation of major provitamin A carotenes and lycopene in carrot roots. Molecular Genetics and Genomics. 268:122-129.
COMPARISON OF AFLPS, RAPD MARKERS, AND ISOZYMES FOR DIVERSITY ASSESSMENT OF GARLIC AND DETECTION OF PUTATIVE DUPLICATES IN GERMPLASM COLLECTIONS - (Peer Reviewed Journal)
Ipek, M., Ipek, A., Simon, P.W. 2003. Comparison of AFLPs, RAPD markers, and isozymes for diversity assessment of garlic and detection of putative duplicates in germplasm collections. Journal of the American Society for Horticultural Science. 128:246-252.
CLASSICAL AND MOLECULAR BREEDING FOR DISEASE AND PEST RESISTANCE IN CARROTS - ()
PIGMENTS - ()
CAROTENOIDS - ()
PCR-BASED MARKERS TO DIFFERENTIATE THE MITOCHONDRIAL GENOMES OF PETALOID AND MALE FERTILE CARROT (DAUCUS CAROTA L.) - (Peer Reviewed Journal)
Bach, I.C., Olesen, A., Simon, P.W. 2002. PCR-based markers to differentiate the mitochondrial genomes of petaloid and male fertile carrot (Daucus carota L.). Euphytica. 127:353-365.
DIVERSITY, FERTILITY AND SEED PRODUCTION OF GARLIC - ()
Etoh, T., Simon, P.W. 2002. Diversity, fertility and seed production of garlic. In: Rabinowitch, H.D. and Currah, L., editors. Advances in Allium Science. New York, NY: CABI Publishing. p. 101-118.
THE USE OF AFLP MARKERS FOR THE IDENTIFICATION OF CARROT BREEDING LINES ANDF1 HYBRIDS - (Peer Reviewed Journal)
MOLECULAR DIVERSITY ANALYSIS OF CULTIVATED CARROT (DAUCUS CAROTA L.) AND WILD DAUCUS POPULATIONS REVEALS A GENETICALLY UNSTRUCTURED COMPOSITION - (Peer Reviewed Journal)
SEQUENCING OF SPECIFIC AFLP AMPLICONS REVEALS HIGHLY CONSERVED DNA SEQUENCES MAPPING TO THE SAME LINKAGE GROUPS IN TWO UNRELATED F2 POPULATIONS OF CARROT - (Peer Reviewed Journal)
DIALLEL ANALYSIS OF HIGH CAROTENOID CONTENT IN CUCUMBER FRUIT - (Peer Reviewed Journal)
CLASSICAL BREEDING TO IMPROVE VEGETABLE VITAMIN AND PROVITAMIN CONTENT - ()
MODIFIED PROTOCOLS FOR RAPID EXTRACTION OF PLANT GENOMIC DNA, AFLP ANALYSISAND VISUALIZATION WITH RADIOISOTOPE OR SILVER STAIN IN CARROTS - (Peer Reviewed Journal)
DOMESTICATION, HISTORICAL DEVELOPMENT, AND MODERN BREEDING OF CARROT - (Peer Reviewed Journal)
CARROTS AND RELATED VEGETABLE UMBELLIFERAE - ()
MOLECULAR BREEDING OF VEGETABLE CROPS FOR IMPROVED PROVITAMIN A CAROTENOID CONTENT - ()
PCR MARKERS SPECIFIC FOR THE MITOCHONDRIAL GENOME OF PETALOID CARROT (DAUCUS CAROTA L.) - (Abstract Only)
LACK OF ACID SOLUBLE INVERTASE ISOZYME II TRANSCRIPT IS ASSOCIATED WITH HIGH SUCROSE ACCUMULATION IN A NATURALLY OCCURRING INVERTASE MUTANT OF CARROT (DAUCUS CAROTA L.) - (Abstract Only)
IMPROVED PHYTONUTRIENT CONTENT THROUGH PLANT GENETIC IMPROVEMENT - (Peer Reviewed Journal)
EVIDENCE FOR SIMPLY INHERITED DOMINANT RESISTANCE TO MELOIDOGYNE JAVANICA IN CARROT - (Peer Reviewed Journal)
RAPD LINKAGE MAP OF THE GENOMIC REGION ENCOMPASSING THE ROOT-KNOT NEMATODE MELOIDOGYNE JAVANICA RESISTANCE LOCUS IN CARROT - (Peer Reviewed Journal)
EVIDENCE FOR MATERNAL INHERITANCE OF THE CHLOROPLAST GENOME IN CULTIVATED CARROT (DAUCUS CAROTA L. SSP. SATIVUS) - (Peer Reviewed Journal)
LINKAGE RELATIONSHIPS AMONG MOLECULAR MARKERS AND STORAGE ROOT TRAITS OF CARROT (DAUCUS CAROTA L. SSP. SATIVUS) - (Peer Reviewed Journal)
CONVERSION OF AN AFLP FRAGMENT LINKED TO THE CARROT Y2 LOCUC TO A SIMPLE, CODOMINANT, PCR-BASED MARKER FORM - (Peer Reviewed Journal)
EXPRESSION OF SOLUBLE INVERTASE IN TRANSFORMED CARROT - (Abstract Only)
EFFECTS OF PLANT TISSUE AND DNA PURIFICATION METHOD ON RAPD BASED GENETIC FINGERPRINTING ANALYSIS IN (DAUCUS CAROTA L) - (Peer Reviewed Journal)
GENETIC RELATIONSHIPS AND DIVERSITY IN CARROT AND OTHER DAUCUS TAXA BASED ON NUCLEAR TESTRICTION FRAGMENT LENGTH POLYMORPHISMS (NRFLPS) - (Peer Reviewed Journal)
AFLP-DERIVED, CODOMINANT MARKERS FOR LOCUS-SPECIFIC APPLICATIONS - (Abstract Only)
PHYLOGENY AND RELATIONSHIPS IN DAUCUS BASED ON RESTRICTION FRAGMENT LENGTH POLYMORPHISMS (RFLPS) OF THE CHLOROPLAST AND MITOCHONDRIAL GENOMES - (Peer Reviewed Journal)
CONTINUOUS CALLUS PRODUCTION AND REGENERATION OF GARLIC (ALLIUM SATIVUM L) USING ROOT SEGMENTS FROM SHOOT TIP-DERIVED PLANTLETS - (Peer Reviewed Journal)
PROMOTER ACTIVITY AND OSMOTICUM EFFECT IN GARLIC AND ONION FOR TRANSFORMATION - (Abstract Only)
B7262, PURPLE CARROT INBRED - (Peer Reviewed Journal)
MOLECULAR MAPPING OF CARROT (DAUCUS CAROTA L.) USING RFLP AND RAPD MARKERS - (Proceedings)