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ARS Home » Pacific West Area » Albany, California » Western Regional Research Center » Produce Safety and Microbiology Research » People & Locations » Yujie Zhang
Yujie Zhang
Produce Safety and Microbiology Research
Research Microbiologist

Phone: (510) 559-6431
Fax: (510) 559-6162

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Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
DeepPL: A deep-learning-based tool for the prediction of bacteriophage lifecycle Reprint Icon - (Peer Reviewed Journal)
Zhang, Y., Mao, M., Zhang, R., Liao, Y., Wu, V.C. 2024. DeepPL: A deep-learning-based tool for the prediction of bacteriophage lifecycle. PLoS Computational Biology. 20(10). Article e1012525. https://doi.org/10.1371/journal.pcbi.1012525.
Characterization of two novel Salmonella phages having biocontrol potential against Salmonella spp. in gastrointestinal conditions Reprint Icon - (Peer Reviewed Journal)
Zhang, Y., Chu, M., Liao, Y., Salvador, A., Wu, V.C. 2024. Characterization of two novel Salmonella phages having biocontrol potential against Salmonella spp. in gastrointestinal conditions. Scientific Reports. 14. Article 12294. https://doi.org/10.1038/s41598-024-59502-9.
The stress response of Listeria monocytogenes inoculated on fresh apples exposed to gaseous chlorine dioxide Reprint Icon - (Peer Reviewed Journal)
Guan, J., Lacombe, A.C., Rane, B., Van Blair, J.B., Zhang, Y., Tang, J., Sablani, S., Wu, V.C. 2024. The stress response of Listeria monocytogenes inoculated on fresh apples exposed to gaseous chlorine dioxide. Journal of Food Safety. 44(3) Article. e13126. https://doi.org/10.1111/jfs.13126.
DeepPL: a deep-learning-based tool for the prediction of bacteriophage lifecycle - (Abstract Only)
A new member of Tequintavirus bacteriophage isolated from sewage water with antimicrobial potential against multidrug-resistant Salmonella Infantis strains - (Abstract Only)
A new Rogue-like Escherichia phage UDF157lw to control Escherichia coli O157:H7 Reprint Icon - (Peer Reviewed Journal)
Liao, Y., Ho, K., Zhang, Y., Salvador, A., Wu, V.C. 2024. A new Rogue-like Escherichia phage UDF157lw to control Escherichia coli O157:H7. Frontiers in Microbiology. 14. Article 1302032. https://doi.org/10.3389/fmicb.2023.1302032.
Gut phageome—An insight into the role and impact of gut microbiome and their correlation with mammal health and diseases Reprint Icon - (Review Article)
Zhang, Y., Sharma, S., Tom, L., Liao, Y., Wu, V.C. 2023. Gut phageome—An insight into the role and impact of gut microbiome and their correlation with mammal health and diseases. Microorganisms. 11(10). Article 2454. https://doi.org/10.3390/microorganisms11102454.
Microbiome profiles of an organic agricultural environment microcosm: A window to bacteriophage-bacterial population dynamics and the evolution of antibiotic resistance in the agricultural environment microbiome - (Abstract Only)
Comparative metagenomics reveal the effect of diet on the fecal virome and the associations with production traits of beef cattle - (Abstract Only)