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Adelumola Oladeinde (Ade)
Egg and Poultry Production Safety Research Unit
Research Microbiologist

Phone: (706) 546-3014
Fax:

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Projects
Reduction of Foodborne Pathogens and Antimicrobial Resistance in Poultry Production Environments
In-House Appropriated (D)
  Accession Number: 438928
Development of Bioinformatic Tools for Omic Data Integration
Non-Assistance Cooperative Agreement (S)
  Accession Number: 440279
Application of Probiotics as an Alternative to Antibiotics for the Reduction of Salmonella in Poultry
Non-Assistance Cooperative Agreement (S)
  Accession Number: 441942
Salmonella and Campylobacter! Leveraging Odor Signatures of Microbial Metabolism as a Non-invasive Detection Method of Foodborne Pathogens
Non-Assistance Cooperative Agreement (S)
  Accession Number: 443668
Identify Environmental and Management Drivers of Foodborne Pathogen Ecology Under Pastured Poultry Rearing Systems
Non-Assistance Cooperative Agreement (S)
  Accession Number: 444742

Publications (Clicking on the reprint icon Reprint Icon will take you to the publication reprint.)
Survival of Antimicrobial Resistant Salmonella Heidelberg Inoculated into Microcosms of Fresh Wood Shavings for Broiler Litter - (Peer Reviewed Journal)
A Novel Slope-Matrix-Graph Algorithm to Analyze Compositional Microbiome Data Reprint Icon - (Peer Reviewed Journal)
Zhang, M., Li, X., Oladeinde, A.A., Rothrock Jr, M.J., Pokoo-Aikins, A., Zock, G. 2024. A Novel Slope-Matrix-Graph Algorithm to Analyze Compositional Microbiome Data . Microorganisms. https://doi.org/10.3390/microorganisms12091866.
Salmonella Biomapping of a Commercial Broiler Hatchery Reprint Icon - (Peer Reviewed Journal)
Rothrock Jr, M.J., Al Hakeem, W., Oladeinde, A.A., Looft, T.P., Li, X., Guard, J. 2024. Salmonella Biomapping of a Commercial Broiler Hatchery. Journal of Food Protection. //doi.org/10.1016/j.jfp.2024.100347.
16S amplicon-based microbiome biomapping of a commercial broiler hatchery Reprint Icon - (Peer Reviewed Journal)
Rothrock Jr, M.J., Zwirzitz, B., Al Hakeem, W., Oladeinde, A.A., Guard, J.Y., Li, X. 2024. 16S amplicon-based microbiome biomapping of a commercial broiler hatchery. Animal Microbiome. https://doi.org/10.1186/s42523-024-00334-3.
A meta-analysis of 16S rRNA amplicon studies to determine a core microbiome in chicken cecal contents - (Abstract Only)
Analysis of a defined consortium on the competitive exclusion of Salmonella in chickens - (Abstract Only)
Deciphering selective pressures: comparative genomics and phylogenetic analyses of four virulence factors in Listeria monocytogenes isolates linked to chicken consumption in the United States. - (Abstract Only)
Li, X., Oladeinde, A.A., Rothrock Jr, M.J., Ishii, S., Shen, C. 2024. Deciphering selective pressures: comparative genomics and phylogenetic analyses of four virulence factors in Listeria monocytogenes isolates linked to chicken consumption in the United States. Poultry Science Association Meeting Abstract. PSA Annual Meeting.
Application of competitive microbes, predatory bacteria and antimicrobials for biocontrol and inactivation of foodborne pathogens - (Abstract Only)
Olanya, O.M., Ukuku, D.O., Mukhopadhyay, S., Oladeinde, A.A., Lakshman, D.K. 2024. Application of competitive microbes, predatory bacteria and antimicrobials for biocontrol and inactivation of foodborne pathogens. Meeting Abstract. 0.
Microbiota profile and antibiotic resistance genes in the caecal content of broiler chickens are influenced by dietary protein content and the plant protein source - (Abstract Only)
Effects of soybean meal and wheat bran on immune response and cecal bacterial antimicrobial resistance gene response in broilers - (Abstract Only)
A metagenomics perspective to evaluate probiotics combating Salmonella Infantis in poultry settings – a case study - (Abstract Only)
Li, X., Oladeinde, A.A., Rothrock Jr, M.J., Aggrey, S.E., Hamaoka, T., Abdo, Z., Buhr, R.J., Pokoo-Aikins, A. 2024. A metagenomics perspective to evaluate probiotics combating Salmonella Infantis in poultry settings – a case study. American Society for Microbiology. ASM Microbe: 2024.
Competitive exclusion of Salmonella colonization in chickens using a defined community of bacteria - (Abstract Only)
Comparison of metagenomic sequencing methods using Salmonella Heidelberg infected broilers - (Abstract Only)
Li, X., Oladeinde, A.A., Rothrock Jr, M.J. 2023. Comparison of metagenomic sequencing methods using Salmonella Heidelberg infected broilers. International Poultry Scientific Forum. IPSF:2024.
Machine learning algorithms predict Listeria prevalence and Campylobacter species on pastured poultry farms based on management practices and farm environment variables - (Abstract Only)
Li, X., Rothrock Jr, M.J., Oladeinde, A.A. 2024. Machine learning algorithms predict Listeria prevalence and Campylobacter species on pastured poultry farms based on management practices and farm environment variables. International Poultry Scientific Forum. IPSF:2024.
Virulence factors and antimicrobial resistance profiles of Campylobacter isolates recovered from consecutively reused broiler litter - (Peer Reviewed Journal)
Woyda, R., Oladeinde, A.A., Endale, D.M., Strickland, T.C., Plumblee Lawrence, J.R., Abdo, Z. 2023. Virulence factors and antimicrobial resistance profiles of Campylobacter isolates recovered from consecutively reused broiler litter. Microbiology Spectrum. 11(6):1-18.
Detecting broiler chickens on litter floor with the YOLOv5-CBAM deep learning model - (Peer Reviewed Journal)
Guo, Y., Aggrey, S.E., Oladeinde, A.A., Qiao, Y., Chai, L. 2023. Detecting broiler chickens on litter floor with the YOLOv5-CBAM deep learning model. Artificial Intelligence in Agriculture. 9:36-45.
Temporal dynamics of the cecal and litter microbiome of chickens raised in two separate broiler houses Reprint Icon - (Peer Reviewed Journal)
Zwirzitz, B., Oladeinde, A.A., Johnson, J., Zock, G., Milfort, M.C., Fuller, L.A., Ghareeb, A., Foutz, J., Teran, J., Woyda, R., Abdoa, Z., Looft, T., Plumblee Lawrence, J.R., Aggrey, S.E. 2023. Temporal dynamics of the cecal and litter microbiome of chickens raised in two separate broiler houses. Frontiers in Physiology. https://doi.org/10.3389/fphys.2023.1083192.
Chicken production and human clinical Escherichia coli isolates differ in their carriage of antimicrobial resistance and virulence factors Reprint Icon - (Peer Reviewed Journal)
Woyda, R., Oladeinde, A., Abdo, Z. 2023. Chicken production and human clinical Escherichia coli isolates differ in their carriage of antimicrobial resistance and virulence factors. Applied and Environmental Microbiology. https://doi.org/10.1128/aem.01167-22.
Environmental conditions shape the gut microbiome of broiler chicken - (Abstract Only)
Monitoring behaviors of broiler chickens at different ages with deep learning Reprint Icon - (Peer Reviewed Journal)
Guo, Y., Aggrey, S.E., Wang, P., Oladeinde, A.A., Chai, L. 2022. Monitoring behaviors of broiler chickens at different ages with deep learning. Animals. https://doi.org/10.3390/ani12233390.
Management and environmental factors influence the prevalence and abundance of food-borne pathogens and commensal bacteria in peanut hull-based broiler litter Reprint Icon - (Peer Reviewed Journal)
Oladeinde, A., Babafela, A., Woyda, R., Abdo, Z., Endale, D., Strickland, T., Plumblee Lawrence, J.R., Cudnik, D., House, S.L., Cook, K.L. 2022. Management and environmental factors influence the prevalence and abundance of food-borne pathogens and commensal bacteria in peanut hull-based broiler litter. Poultry Science. https://doi.org/10.1016/j.psj.2022.102313.
Transferability of ESBL-encoding IncN and IncI1 plasmids among field strains of different Salmonella serovars and Escherichia coli Reprint Icon - (Peer Reviewed Journal)
Dorr, M., Silver, A., Smurlick, D., Arukha, A., Kariyawasam, S., Oladeinde, A.A., Cook, K., Denagamage, T. 2022. Transferability of ESBL-encoding IncN and IncI1 plasmids among field strains of different Salmonella serovars and Escherichia coli. Journal of Global Antimicrobial Resistance. 30:88-95. https://doi.org/10.1016/j.jgar.2022.04.015.
Litter commensal bacteria can limit the horizontal gene transfer of antimicrobial resistance to Salmonella in chickens. - (Peer Reviewed Journal)
Oladeinde, A.A., Abdo, Z., Zwirzitz, B., Woyda, R., Lakin, S.M., Press, M.O., Cook, K.L., Cox Jr, N.A., Thomas, J.C., Looft, T.P., Rothrock Jr, M.J., Zock, G.S., Plumblee Lawrence, J.R., Cudnik, D., Ritz, C. 2022. Litter commensal bacteria can limit the horizontal gene transfer of antimicrobial resistance to Salmonella in chickens. Applied and Environmental Microbiology.88(9). https://doi.org/10.1128/aem.02517-21
Bacterial sampling from organic farms demonstrates importance of cleaning produce before consumption - (Abstract Only)
Bacterial Detection and Recovery from Poultry Litter. Reprint Icon - (Peer Reviewed Journal)
Plumblee Lawrence, J.R., Cudnik, D., Oladeinde, A.A. 2022. Bacterial detection and recovery from Poultry Litter. Frontiers in Microbiology. 12:803150. https://doi.org/10.3389/fmicb.2021.803150.
Determination of bacterial pathogen diversity and prevalence in acidified re-used poultry litter during commercial live production - (Abstract Only)
Campylobacter prevalence differs across and within broiler houses with re-used poultry litter - (Abstract Only)
Application of Imaging Systems for Monitoring Poultry Well-being - (Research Notes)
Chai, L., Guo, Y., Aggrey, S.E., Oladeinde, A.A., Ritz, C. 2022. Application of Imaging Systems for Monitoring Poultry Well-being. University of Georgia Research Report. UGA Cooperative Extension Circular 1256.
AT homopolymer strings in salmonella enterica subspecies I contribute to speciation and serovar diversity Reprint Icon - (Peer Reviewed Journal)
Guard, J.Y., Rivers, A.R., Vaughn, J.N., Rothrock Jr, M.J., Oladeinde, A.A., Shah, D. 2021. AT homopolymer strings in salmonella enterica subspecies I contribute to speciation and serovar diversity. Microorganisms. 9(10):2075. https://doi.org/10.3390/microorganisms9102075.
Salmonella diversity along the farm-to-fork continuum of pastured poultry flocks in the southeastern United States Reprint Icon - (Peer Reviewed Journal)
Rothrock Jr, M.J., Oladeinde, A.A., Guard, J.Y. 2021. Salmonella diversity along the farm-to-fork continuum of pastured poultry flocks in the southeastern United States. Frontiers in Animal Science. 2:761930. https://doi.org/10.3389/fanim.2021.761930.
Escaping the fate of Sisyphus: assessing resistome hybridization baits for antimicrobial resistance gene capture Reprint Icon - (Peer Reviewed Journal)
Beaudry, M.S., Thomas, J.C., Baptista, R.P., Sullivan, A.H., Norfolk, W., Devault, A., Enk, J., Kieran, T.J., Rhodes, O.E., Perry-Dow, K., Rose, L., Bayona-Vasquez, N.J., Oladeinde, A.A., Lipp, E.K., Sanchez, S., Glenn, T.C. 2021. Escaping the fate of Sisyphus: assessing resistome hybridization baits for antimicrobial resistance gene capture. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15767.
Horizontal gene transfer is the main driver of antimicrobial resistance in broiler chicks infected with Salmonella enterica Serovar Heidelberg Reprint Icon - (Peer Reviewed Journal)
Oladeinde, A.A., Abdo, Z., Press, M.O., Cook, K.L., Cox Jr, N.A., Zwirtzitz, B., Woyda, R., Lakin, S.M., Thomas Iv, J.C., Looft, T.P., Cosby, D.E., Hinton Jr, A., Guard, J.Y., Line, J.E., Rothrock Jr, M.J., Berrang, M.E., Herrington, K., Zock, G.S., Plumblee Lawrence, J.R., Cudnik, D., House, S.L., Ingram, K.D., Lariscy, L., Wagner, R., Aggrey, S.E., Chai, L., Ritz, C. 2021. Horizontal gene transfer is the main driver of antimicrobial resistance in broiler chicks infected with Salmonella enterica Serovar Heidelberg. mSystems. 6(4):e00729-21. https://doi.org/10.1128/mSystems.00729-21.
Unveiling the gut microbiota and resistome of the wild cotton-mice, Peromyscus gossypinus, from heavy metal and radionuclide-contaminated sites in the Southeastern US Reprint Icon - (Peer Reviewed Journal)
Thomas, J.C., Kieran, T.J., Finger, J.W., Bayona-Vasquez, N.J., Oladeinde, A.A., Beasley, J., Seaman, J.C., Mcarthur, J., Rhodes, O.E., Glenn, T.C. 2021. Unveiling the gut microbiota and resistome of the wild cotton-mice, Peromyscus gossypinus, from heavy metal and radionuclide-contaminated sites in the Southeastern US. American Society for Microbiology. 9:e00097-21. https://doi.org/10.1128/Spectrum.00097-21.
Antibiotic resistance horizontal gene transfer from the commensal microbiota to Salmonella enterica Serovar Heidelberg, in the chicken gastrointestinal tract - (Abstract Only)
Succession patterns of the bacterial community in poultry litter after bird removal and sodium bisulfate application Reprint Icon - (Peer Reviewed Journal)
Johnson, J., Zwirzitz, B., Oladeinde, A.A., Milfort, M.C., Looft, T.P., Chai, L., Zock, G.S., Sommers, M., Tunim, S., Aggrey, S.E. 2021. Succession patterns of the bacterial community in poultry litter after bird removal and sodium bisulfate application. Journal of Environmental Quality. 50(4):923-933. https://doi.org/10.1002/jeq2.20248.
Diversity of Plasmids and Genes Encoding Resistance to Extended-Spectrum ß-Lactamase in Escherichia coli from Different Animal Sources Reprint Icon - (Peer Reviewed Journal)
Ibekwe, A.M., Durso, L.M., Ducey, T.F., Oladeinde, A., Jackson, C.R., Frye, J.G., Dungan, R.S., Moorman, T.B., Brooks, J.P., Obayiuwana, A., Karathia, H., Fanelli, B., Hasan, N.A. 2021. Diversity of plasmids and genes encoding resistance to extended-spectrum ß-Lactamase in Escherichia coli from different animal sources. Microorganisms. 9(5). Article 1057. https://doi.org/10.3390/microorganisms9051057.
A machine vision-based method optimized for restoring broiler chicken images occluded by feeding and drinking equipment Reprint Icon - (Peer Reviewed Journal)
Guo, Y., Aggrey, S.E., Oladeinde, A.A., Johnson, J., Zock, G.S., Chai, L. 2021. A machine vision-based method optimized for restoring broiler chicken images occluded by feeding and drinking equipment. Animals. 11(1):123. https://doi.org/10.3390/ani11010123.
Succession patterns of poultry litter microbiota after bird removal and PLT(R) application - (Abstract Only)
A machine vision-based method for monitoring broiler chicken floor distribution Reprint Icon - (Peer Reviewed Journal)
Guo, Y., Chai, L., Aggrey, S., Oladeinde, A.A., Johnson, J., Zock, G. 2020. A machine vision-based method for monitoring broiler chicken floor distribution. Sensors. http://doi.org/10.3390/s20113179.
Broiler house particulate matter, aerobiome, and antibiotic resistant E. coli under "raised without antibiotics" production - (Abstract Only)
A machine vision-based method for monitoring broiler chicken floor distribution - (Abstract Only)
Persistence of antibiotic resistant pathogens and commensal bacteria in “no antibiotic ever” production broiler house litter - (Abstract Only)
Temperature, humidity and ammonia are important environmental parameters modulating the gut microbiome of broilers under “Raised Without Antibiotics” production - (Abstract Only)
Broiler house particulate matter, aerobiome and antibiotic resistant E. coli under “raised without antibiotics” production - (Abstract Only)
Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg Reprint Icon - (Peer Reviewed Journal)
Bucher, M., Zwirzitz, B., Oladeinde, A.A., Cook, K.L., Plymel, C., Zock, G., Aggrey, S., Ritz, C., Looft, T.P., Lipp, E., Agga, G.E., Sistani, K.R. 2020. Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg. Journal of Environmental Quality. 49(4):869-881. https://doi.org/10.1002/jeq2.20081.
Co-occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site Reprint Icon - (Peer Reviewed Journal)
Thomas, J., Oladeinde, A.A., Kierant, T., Finger, J., Vasquez, N., Cartee, J., Beasley, J., Seaman, J., Mcarthur, V., Rhodes, O., Glenn, T. 2020. Co-occurrence of antibiotic, biocide, and heavy metal resistance genes in bacteria from metal and radionuclide contaminated soils at the Savannah River Site. Microbial Biotechnology. https://doi.org/10.1111/1751-7915.13578.
Multiple E. coli sequence types contribute to the acquisition of IncI1 plasmids in Salmonella Heidelberg - (Abstract Only)
Longitudinal sampling of organic farms for microbiological quality farmers’ market produce: bacteria and antibiotic resistance on USDA certified organic farms that use biological soil amendments of animal origin - (Abstract Only)
Does built-up litter competitively exclude Salmonella: What have we learned from Salmonella Heidelberg? - (Abstract Only)
Plasmid and antibiotic resistance genes present in the ceca of broiler chickens infected with Eimeria spp - (Abstract Only)
Research Note: Evaluation of several inoculation procedures for colonization of day-old broiler chicks with Salmonella Heidelberg Reprint Icon - (Peer Reviewed Journal)
Cox Jr, N.A., Oladeinde, A.A., Cook, K.L., Zock, G.S., Berrang, M.E., Ritz, C.W., Hinton Jr, A. 2020. Research Note: Evaluation of several inoculation procedures for colonization of day-old broiler chicks with Salmonella Heidelberg. Poultry Science. 99(3):1615-1617. https://doi.org/10.1016/j.psj.2019.10.020.
Horizontal gene transfer and acquired antibiotic resistance in S. Heidelberg following in vitro incubation in broiler ceca Reprint Icon - (Peer Reviewed Journal)
Oladeinde, A.A., Cook, K.L., Lakin, S., Abdo, Z., Looft, T.P., Herrington, K., Zock, G.S., Plumblee Lawrence, J.R. 2019. Horizontal gene transfer and acquired antibiotic resistance in S. Heidelberg following in vitro incubation in broiler ceca. Applied and Environmental Microbiology. 85(22):e01903-19. https://doi.org/10.1128/AEM.01903-19.
Genetic characteristics of Salmonella Isolates recovered from reused broiler Reprint Icon - (Peer Reviewed Journal)
Woyda, R., Oladeinde, A.A., Endale, D., Strickland, T., Plumblee Lawrence, J.R., Abdo, Z. 2024. Genetic characteristics of Salmonella Isolates recovered from reused broiler. Journal of Food Protection. https://doi.org/10.1016/j.jfp.2024.100236.