Zachary Foster
Horticultural Crops Disease and Pest Management Research Unit
Research Plant Pathologist
Phone: (541) 738-4082
Fax:
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Publications
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Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data
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Foster, Z.S.L., Tupper, A.S., Press, C.M., Grunwald, N.J. 2024. Krisp: A Python package to aid in the design of CRISPR and amplification-based diagnostic assays from whole genome sequencing data. PLoS Computational Biology. 20(5):e1012139. https://doi.org/10.1371/journal.pcbi.1012139.
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Metabarcoding for plant pathologists
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Sudermann, M., Foster, Z.S., Chang, J., Grunwald, N.J. 2023. Metabarcoding for plant pathologists. Canadian Journal of Plant Pathology. 46(2):142-160. https://doi.org/10.1080/07060661.2023.2290041.
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Genetic Diversity, Evolution, and Diagnosis of Sugarcane Yellow Leaf Virus from 19 Sugarcane-Producing Locations
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Rott, P., Grinstead, S.C., Dallot, S., Foster, Z.S., Daugrois, J., Fernandez, E., Kaye, C., Hendrickson, L., Hu, X., Adhikari, B.N., Malapi-Wight, M., Grunwald, N.J., Roumagnac, P., Mollov, D.S. 2023. Genetic Diversity, Evolution, and Diagnosis of Sugarcane Yellow Leaf Virus from 19 Sugarcane-Producing Locations. Plant Disease. https://doi.org/10.1094/PDIS-10-22-2405-RE.
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Openness and computational reproducibility in plant pathology: Where we stand and a way forward
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Sparks, A.H., Del Ponte, E., Alves, K., Foster, Z.S., Grunwald, N.J. 2023. Openness and computational reproducibility in plant pathology: Where we stand and a way forward. Phytopathology. https://doi.org/10.1094/PHYTO-10-21-0430-PER.
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A new oomycete metabarcoding method using the rps10 gene
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Foster, Z.S., Albornoz, F.E., Fieland, V.J., Larsen, M.M., Jones, F.A., Tyler, B.M., Nguyen, H.D., Burgess, T., Riddell, C., Voglmayr, H., Martin, F.N., Grunwald, N.J. 2022. A new oomycete metabarcoding method using the rps10 gene. Phytobiomes Journal. 6(3):214-226. https://doi.org/10.1094/PBIOMES-02-22-0009-R.
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