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» Clay Center, Nebraska
» U.S. Meat Animal Research Center
» WGS
» Species mapped to cattle
» Banteng
| Banteng |
|
10-20x WGS of Banteng (Bos javanicus)
To view DNA sequence data for an animal or a breed group:
-
Download and install a desktop version of IGV (for example, version 2.12.2)
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In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
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Copy a URL link address (right-click) and paste into IGV: File> "Load from URL..."
- Note: left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)
| Species/breeda | Animal ID | Public links | Estimated mapped read coverage | GB >Q20b |
|
| Banteng | SDZ OR206 | URL | 19x | 58.4 | |
| Banteng | SDZ KB3218 | URL | 19x | 58.3 | |
| Banteng | TTX 84_B | URL | 22x | 67.1 | |
| Banteng | TTX 88_B | URL | 22x | 68.1 | |
| Banteng | TTX 79_1 | URL | 18x | 53.8 | |
| Banteng | TTX 90_B | URL | 40x | 120.6 | |
| Banteng | TTX 99_B | URL | 24x | 71.4 | |
| Banteng | TTX 0807_1 | URL | 14x | 42.5 | |
| Banteng | TTX 0805_B | URL | 21x | 62.8 | |
| Banteng | TTX 97_1 | URL | 16x | 46.6 | |
| Banteng | TTX 85_B | URL | 34x | 103.3 | |
| Banteng | TTX 82_B | URL | 20x | 60.1 | |
| Banteng | TTX 86_B1 | URL | 16x | 46.3 | |
| Banteng, 13 genomes URL | |||||
| Total | 859.3 | ||||
| Average | 66.1 | ||||
| aCitation: | |||||
| doi: | |||||
| bTotal gigabytes of fastq genomic sequence used. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA). | |||||
| Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. | |||||
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