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» Clay Center, Nebraska
» U.S. Meat Animal Research Center
» WGS
» Species mapped to cattle
» Bison
| Bison |
|
10-20x WGS of Plains Bison (Bison bison bison)
To view DNA sequence data for an animal or a breed group:
-
Download and install a desktop version of IGV (for example, version 2.12.2)
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In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]
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Copy a URL link address (right-click) and paste into IGV: File> "Load from URL..."
- Note: left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)
| Species/breeda | Animal ID | Public links | Estimated mapped read coverage | GB >Q20b |
|
| Bison, Plains | NAGP14568 | URL | |||
| Bison, Plains | NAGP5852 | URL | |||
| Bison, Plains | 709 | URL | |||
| Bison, Plains | 199912003 | URL | |||
| Bison, Plains | 199912001 | URL | |||
| Bison, 5 genomes URL | |||||
| Beefalo | NAGP5851 | URL | 35.3 | 106.0 | |
| Beefalo | NAGP5854 | URL | 37.8 | 113.1 | |
| Beefalo | NAGP5861 | URL | 32.2 | 96.7 | |
| Beefalo | NAGP5887 | URL | 42.7 | 128.0 | |
| Beefalo | NAGP5895 | URL | 40.5 | 121.5 | |
| Beefalo | NAGP5872 | URL | 30.0 | 90.0 | |
| Beefalo | NAGP5874 | URL | 34.5 | 103.5 | |
| Beefalo, 7 genomes URL | 759.6 | ||||
| Bison-Beefalo, 12 genomes URL | |||||
| Brahman | 19919842 | URL | 19.6 | 79.7 | |
| Indu Brazil | 19361502 | URL | 11.8 | 47.8 | |
| Nelore | 19350205 | URL | 20.4 | 68.0 | |
| Indicus, 3 genomes URL | 195.7 | ||||
| Bison, Beefalo, Indicus, 20 genome URL | |||||
| Total | |||||
| Average | |||||
| aCitation: Oppenheimer et al. A Reference Genome Assembly of American Bison, Bison bison bison, Journal of Heredity, 112:174–183. | |||||
| doi: https://doi.org/10.1093/jhered/esab003 | |||||
| bTotal gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA). | |||||
| Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA. | |||||
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