Buffalo, Cape

1 - Species mapped to cattle 2 - Banteng 3 - Bison 4 - Bongo 5 - Buffalo, Cape 6 - Buffalo, water 7 - Bushbuck 8 - Caribou 9 - Eland 10 - Gaur 11 - Gemsbok 12 - Moose 13 - Muskox 14 - Nilgai 15 - Pronghorn 16 - Sheep, bighorn 17 - Sheep, domestic 18 - Wildebeest 19 - Yak 20 - Temp

 

10-20x WGS of Cape buffalo (Syncerus caffer)

To view DNA sequence data for an animal or a breed group:

• Download and install a desktop version of IGV (for example, version 2.12.2)

• In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]

• Copy a URL link address (right-click) and paste into IGV:  File> "Load from URL..."

  • Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)

 

	Species/breeda	Animal ID	Public links	Estimated mapped read coverage	GB >Q20b
	Cape buffalo	200778001	URL	14x	41.5
	Cape buffalo	200778002	URL	14x	43.1
	Cape buffalo	200778003*	URL	14x	41.7
	Cape buffalo	201178007	URL	14x	41.6
	Cape buffalo	201178008	URL	18x	52.6
	Cape buffalo	200778004	URL	14x	43.5
	Cape buffalo	200778005*	URL	16x	48.7
	Cape buffalo, 7 genomes URL
			Total
			Average
aCitation:
doi:
bTotal gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).
Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA.
*Note: these data sets appear to be from the same animal.

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