Caribou

1 - Species mapped to cattle 2 - Banteng 3 - Bison 4 - Bongo 5 - Buffalo, Cape 6 - Buffalo, water 7 - Bushbuck 8 - Caribou 9 - Eland 10 - Gaur 11 - Gemsbok 12 - Moose 13 - Muskox 14 - Nilgai 15 - Pronghorn 16 - Sheep, bighorn 17 - Sheep, domestic 18 - Wildebeest 19 - Yak 20 - Temp

 

10-20x WGS of Caribou (Rangifer tarandus)

To view DNA sequence data for an animal or a breed group:

• Download and install a desktop version of IGV (for example, version 2.12.2)

• In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]

• Copy a URL link address (right-click) and paste into IGV:  File> "Load from URL..."

  • Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)

 

	Species/breeda	Animal ID	Public links	Estimated mapped read coverage	GB >Q20b
	Caribou	200323004	URL	16.2	48.5
	Caribou	200323006	URL	15.8	47.3
	Caribou	200323007	URL	24.8	74.4
	Caribou	200323001	URL	14.9	44.6
	Caribou	200323002	URL	13.5	40.6
	Caribou	200323003	URL	14.2	42.6
	Caribou	200323005	URL	16.5	49.5
	Caribou	200323009	URL	15.1	45.4
	Caribou	200323010	URL	15.9	47.6
	Caribou, 9 genomes URL
			Total	146.9	440.5
			Average	16.3	48.9
aCitation:
doi:
bTotal gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).
Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA.

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