Sheep, bighorn

1 - Species mapped to cattle 2 - Banteng 3 - Bison 4 - Bongo 5 - Buffalo, Cape 6 - Buffalo, water 7 - Bushbuck 8 - Caribou 9 - Eland 10 - Gaur 11 - Gemsbok 12 - Moose 13 - Muskox 14 - Nilgai 15 - Pronghorn 16 - Sheep, bighorn 17 - Sheep, domestic 18 - Wildebeest 19 - Yak 20 - Temp

 

10-20x WGS of bighorn sheep (Ovis canadensis)

To view DNA sequence data for an animal or a breed group:

• Download and install a desktop version of IGV (for example, version 2.12.2)

• In IGV, under the "Genomes" tab, choose "Selected Hosted Genome..." and select "Cow (bosTau9)", [OK]

• Copy a URL link address (right-click) and paste into IGV:  File> "Load from URL..."

  • Note:  left-clicking on a URL under "Public links" will start a 30GB .bam file download (not necessary)

 

	Species/breeda	Animal IDb	Public links	Estimated mapped read coverage	GB >Q20c
	Bighorn sheep	201115009	URL	18.6x	55.9
	Bighorn sheep	201115011	URL	13.7x	45.7
	Bighorn sheep	202215012	URL	23.4x	70.1
	Bighorn sheep	202215013	URL	31.4x	94.2
	Bighorn sheep, 4 genomes URL
	Related species
	Dall's sheep	201185001	URL	13.5x	40.6
	Mouflon	201187002	URL	17.8x	53.3
	Aoudad	201186001	URL
	Aoudad	201186001	URL
	Wild sheep, 8 genomes URL
			Total
			Average
aCitation:
doi:
bAnimal IDs beginning with "SRR" represent fastq data sets downloaded from NCBI, mapped to ARS-UCD1.2, .bam files moved to AWS, and made accessible here for viewing in IGV.
cTotal gigabases of genomic sequence with a quality score greater than or equal to 20. Tru-Seq paired-end libraries were sequenced with NextSeq500 high-output kits (300 cycles, Illumina Inc. San Diego CA).
Mention of trade names or commercial products in this public information release is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the USDA.

<< Previous 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 [16] 17 18 19 20 Next >>